                         SEQUENCE LISTING

<110>  Martin-Luther-Universitt Halle-Wittenberg
 
<120>  Zuverlssige Identifikation von Bereichen (a-Sites') in 
       komplexen RNA-Moleklen, die zugnglich sind fr Nukleinsuren 
       oder Komplexe von Nukleinsuren mit Endonukleasen.

<130>  MLU104WO

<150>  DE 10 2021 107 508.4
<151>  2021-03-25

<160>  45    

<170>  PatentIn version 3.5

<210>  1
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  n is g or a

<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  n is c or g

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is c or a

<220>
<221>  misc_feature
<222>  (7)..(7)
<223>  n is c or g

<220>
<221>  misc_feature
<222>  (8)..(8)
<223>  n is a, g or u

<220>
<221>  misc_feature
<222>  (10)..(10)
<223>  n is a or u

<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n is c, g or a

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is u, g or a

<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  n is u or a

<220>
<221>  misc_feature
<222>  (19)..(19)
<223>  n is u or g

<220>
<221>  misc_feature
<222>  (21)..(21)
<223>  n is c or a

<400>  1
uunnnannan aununacnnu n                                                 21


<210>  2
<211>  21
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Synthetic Oligonucleotide


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  n is g or u

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is a, c or u

<220>
<221>  misc_feature
<222>  (7)..(7)
<223>  n is g, a or c

<220>
<221>  misc_feature
<222>  (11)..(11)
<223>  n is c, a or g

<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n is a or u

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is a, u or c

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is g, c or a

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is u or c

<220>
<221>  misc_feature
<222>  (17)..(17)
<223>  n is c or u

<220>
<221>  misc_feature
<222>  (19)..(19)
<223>  n is a or u

<220>
<221>  misc_feature
<222>  (20)..(20)
<223>  n is u, a or c

<400>  2
aaannancaa nannnnnunn a                                                 21


<210>  3
<211>  21
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide

<400>  3
uugccacaaa aucuuacuuu c                                                 21


<210>  4
<211>  21
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide

<400>  4
aaagaagcaa caaagucuau a                                                 21


<210>  5
<211>  21
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide

<400>  5
uaguucaucc augccaugug u                                                 21


<210>  6
<211>  21
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide

<400>  6
acauggcaug gaugaacuau a                                                 21


<210>  7
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  7
ugauggucuc caugucgcuu g                                                 21


<210>  8
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  8
agcgacaugg agaccaucaa g                                                 21


<210>  9
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  9
auucucuuga uggucuccau g                                                 21


<210>  10
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  10
uggagaccau caagagaaug a                                                 21


<210>  11
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  11
aaaucucuuu cuuaggccaa a                                                 21


<210>  12
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  12
uggccuaaga aagagauuuu u                                                 21


<210>  13
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  13
auaugcagac ucuccacggc u                                                 21


<210>  14
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  14
ccguggagag ucugcauauc a                                                 21


<210>  15
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Syntheti oligonucleotide

<400>  15
uuucgaggcu gaaucacccg a                                                 21


<210>  16
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  16
gggugauuca gccucgaaac c                                                 21


<210>  17
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  17
uuuagcccgg aaaauugcac c                                                 21


<210>  18
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  18
ugcaauuuuc cgggcuaaau g                                                 21


<210>  19
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  19
auucgccaac ucaacucuau c                                                 21


<210>  20
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  20
uagaguugag uuggcgaauu a                                                 21


<210>  21
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  21
agaugcugug acaagagcgc c                                                 21


<210>  22
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  22
cgcucuuguc acagcaucug g                                                 21


<210>  23
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  23
aaaaacgcac ugucuguacc u                                                 21


<210>  24
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  24
guacagacag ugcguuuuuc a                                                 21


<210>  25
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  25
uuagagacag uacaauuuau g                                                 21


<210>  26
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  26
uaaauuguac ugucucuaac c                                                 21


<210>  27
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  27
auaccgguag augugaaugu c                                                 21


<210>  28
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  28
cauucacauc uaccgguauc a                                                 21


<210>  29
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  29
uucacuguua gcuuguuccc u                                                 21


<210>  30
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  30
ggaacaagcu aacagugaac g                                                 21


<210>  31
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  31
auucgaauuc gucucaucgu u                                                 21


<210>  32
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  32
cgaugagacg aauucgaauc a                                                 21


<210>  33
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  33
aagagucugu cuuacucgcc u                                                 21


<210>  34
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  34
gcgaguaaga cagacucuuc a                                                 21


<210>  35
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  35
tagttcatcc atgccatgtg t                                                 21


<210>  36
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  36
tgatggtctc catgtcgctt g                                                 21


<210>  37
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  37
aaatctcttt cttaggccaa a                                                 21


<210>  38
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  38
attcgccaac tcaactctat c                                                 21


<210>  39
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  39
aaaaacgcac tgtctgtacc t                                                 21


<210>  40
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  40
ttagagacag tacaatttat g                                                 21


<210>  41
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  41
ttcactgtta gcttgttccc t                                                 21


<210>  42
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  adenosine modified with 2'-O-methoxyethyl

<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  adenosine modified with 2'-O-methoxyethyl

<220>
<221>  misc_feature
<222>  (20)..(20)
<223>  adenosine modified with 2'-O-methoxyethyl

<220>
<221>  misc_feature
<222>  (21)..(21)
<223>  adenosine modified with 2'-O-methoxyethyl

<400>  42
aaatctcttt cttaggccaa a                                                 21


<210>  43
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Locked Nucleic Acid

<220>
<221>  misc_feature
<222>  (21)..(21)
<223>  Locked Nucleic Acid

<400>  43
aaatctcttt cttaggccaa a                                                 21


<210>  44
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (2)..(3)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (3)..(4)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (4)..(5)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (5)..(6)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (8)..(9)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (9)..(10)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (10)..(11)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (11)..(12)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (15)..(16)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (16)..(17)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (17)..(18)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (18)..(19)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (19)..(20)
<223>  phosphorothioate bond

<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  phosphorothioate bond

<400>  44
aaatctcttt cttaggccaa a                                                 21


<210>  45
<211>  67
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  45
gucuuaggcc aaaucauucu cuugaugguc uguuguggaa gguccaguuu ugaggggcua       60

uuacaac                                                                 67


