                         SEQUENCE LISTING

<110>  ACT Genomics (IP) Co., Ltd.
       WEI, GEORGE D
       CHEN, SHU-JEN D
 
<120>  DNA FRAGMENT JOINING DETECTING METHOD AND KIT THEREOF

<130>  ACTG-9PCT

<150>  63/150,095
<151>  2021-02-17

<160>  69    

<170>  PatentIn version 3.5

<210>  1
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ABL (exon 2)

<400>  1
gcggccagta gcatctgact                                                   20


<210>  2
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ABL (intron 8)

<400>  2
tgataaccgt gaagaaagaa                                                   20


<210>  3
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AFAP1 (exon 4)

<400>  3
ctccggaata catcacatca                                                   20


<210>  4
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ALK (exon 20)

<400>  4
tgtaccgccg gaagcaccag gagc                                              24


<210>  5
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AR (exon 3)

<400>  5
gcaattgcaa gcatctca                                                     18


<210>  6
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AR (exon 4)

<400>  6
aggaaaaatt gtccatcttg tcgtcttcgg aaa                                    33


<210>  7
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AXL (exon 20)

<400>  7
tacagagtgt ggactctggt gcctccaga                                         29


<210>  8
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BAG4 (exon 2)

<400>  8
catatcctgt aagaccagaa                                                   20


<210>  9
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BCR (exon 14)

<400>  9
gccactggat ttaagcagag ttcaa                                             25


<210>  10
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BICC1 (exon 2)

<400>  10
tgctgctgaa gggaaaggca gaagt                                             25


<210>  11
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CCDC6 (exon 1)

<400>  11
gaaccgcgac ctgcgcaaag ccagcgtga                                         29


<210>  12
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EGFR (exon 1)

<400>  12
gtcgggctct ggaggaaaag aaag                                              24


<210>  13
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EGFR (exon 8)

<400>  13
gtaattatgt ggtgacagat                                                   20


<210>  14
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EML4 (exon13)

<400>  14
cacctgggaa aggacctaa                                                    19


<210>  15
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FGFR1 (exon 6)

<400>  15
actctgtggt gccctctgac aagggcaac                                         29


<210>  16
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FGFR2 (exon 10)

<400>  16
ttacagcttc cccagactac ctgg                                              24


<210>  17
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FGFR2 (exon 17)

<400>  17
attctcactc tcacaacc                                                     18


<210>  18
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FGFR2 (exon 8)

<400>  18
accagtctgc ctggctca                                                     18


<210>  19
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FGFR3 (exon 17)

<400>  19
tgtccttacc gtgacgtcca ccga                                              24


<210>  20
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MBIP (exon 4)

<400>  20
aagctgaaat caatgaaaac aacgtcaggg a                                      31


<210>  21
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MET (exon 13)

<400>  21
tgtggctgaa aaagagaaag caaattaaag                                        30


<210>  22
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MET (exon 15)

<400>  22
atcagtttcc taattcatct                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NTRK1 (exon 10)

<400>  23
acagcacatc tggagacccg                                                   20


<210>  24
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PDGFRA (exon 2)

<400>  24
tttcccagag ctatggggac tt                                                22


<210>  25
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PPL (exon 22)

<400>  25
aataaacctg gtggctggag                                                   20


<210>  26
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RET (exon 12)

<400>  26
aagtgggaat tccctcggaa ga                                                22


<210>  27
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ROS1 (exon 32)

<400>  27
tcccaaatta ctagaaggga                                                   20


<210>  28
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SCAF11 (exon 1)

<400>  28
cctcgacctc ggtctga                                                      17


<210>  29
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SLC34A2 (exon 4)

<400>  29
tcgtgtgctc cctggatatt ctta                                              24


<210>  30
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TACC3 (exon 8)

<400>  30
agtcggcctt gaggaagca                                                    19


<210>  31
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NTRK

<400>  31
gggagaatag caggtcccgt                                                   20


<210>  32
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ETV6 (exon 5)

<400>  32
cgccatgccc attgggagaa                                                   20


<210>  33
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NTRK3 (exon 14)

<400>  33
gtcccgtggc tgtcatcagt                                                   20


<210>  34
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NTRK

<400>  34
tggtgtatta ggcccagcct                                                   20


<210>  35
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  QKI (exon 6)

<400>  35
tatcctattg aacctagtgg                                                   20


<210>  36
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NTRK2 (exon 16)

<400>  36
gcccagcctc cgttatcagc                                                   20


<210>  37
<211>  323
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MET-MET alternative splicing

<400>  37
tggaagcaag caatttcttc aaccgtcctt ggaaaagtaa tagttcaacc agatcagaat       60

ttcacaggat tgattgctgg tgttgtctca atatcaacag cactgttatt actacttggg      120

tttttcctgt ggctgaaaaa gagaaagcaa attaaagatc agtttcctaa ttcatctcag      180

aacggttcat gccgacaagt gcagtatcct ctgacagaca tgtcccccat cctaactagt      240

ggggactctg atatatccag tccattactg caaaatactg tccacattga cctcagtgct      300

ctaaatccag agctggtcca ggc                                              323


<210>  38
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MET-MET alternative splicing Foward primer

<400>  38
aagagaaagc aaattaaaga tcagtt                                            26


<210>  39
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  MET-MET alternative splicing Reverse primer

<400>  39
ctgtcagagg atactgcac                                                    19


<210>  40
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U01

<400>  40
gttttcccag tcacgacgt                                                    19


<210>  41
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U02

<400>  41
gcaaatggca ttctgacatc c                                                 21


<210>  42
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U03

<400>  42
gcggataaca atttcacaca gg                                                22


<210>  43
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U04

<400>  43
cgtccatgcc gagagtg                                                      17


<210>  44
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U05

<400>  44
ctttatgttt ttggcgtctt cca                                               23


<210>  45
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U06

<400>  45
gactggttcc aattgacaag c                                                 21


<210>  46
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U07

<400>  46
gcgtgaatgt aagcgtgac                                                    19


<210>  47
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U08

<400>  47
tgtaaaacga cggccagt                                                     18


<210>  48
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U09

<400>  48
aagggtcttg cgaaggatag                                                   20


<210>  49
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Universal primer No. U10

<400>  49
gggttatgct agttattgct cag                                               23


<210>  50
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ETV6-NTRK3 fusion Forward primer

<400>  50
ccacatcatg gtctctgtct                                                   20


<210>  51
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ETV6-NTRK3 fusion Reverse primer

<400>  51
tggttgatgt ggtgcag                                                      17


<210>  52
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFG-NTRK1 fusion Forward primer

<400>  52
acagcagcca ccatataca                                                    19


<210>  53
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFG-NTRK1 fusion Reverse primer

<400>  53
agaccccaaa aggtgtt                                                      17


<210>  54
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFG-NTRK1 fusion Foward primer

<400>  54
atcctttaaa aaaccaagat gaaatcaata                                        30


<210>  55
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFG-NTRK1 fusion Forward primer

<400>  55
gagaagggga tgcacca                                                      17


<210>  56
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TPM3-NTRK1 fusion Forward primer

<400>  56
gacccgtgct gagtttg                                                      17


<210>  57
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TPM3-NTRK1 fusion Reverse primer

<400>  57
aaatgcaggg acatggc                                                      17


<210>  58
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ETV6-NTRK2 fusion Forward primer

<400>  58
ttccaccctg gaaactctat ac                                                22


<210>  59
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ETV6-NTRK2 fusion Reverse primer

<400>  59
cattggagat gtgatggagt g                                                 21


<210>  60
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFG-NTRK3 fusion Forward primer

<400>  60
acagcagcca ccatataca                                                    19


<210>  61
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFG-NTRK3 fusion Reverse primer

<400>  61
ctcgatgcag tgctcca                                                      17


<210>  62
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EGFRvIII mutation-specific forward primer

<400>  62
gggctctgga ggaaaagaa                                                    19


<210>  63
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EGFRvIII mutation-specific reverse primer

<400>  63
tccatctcat agctgtcgg                                                    19


<210>  64
<211>  328
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EGFR-EGFR alternative splicing

<400>  64
ccacctcgtc ggcgtccgcc cgagtccccg cctcgccgcc aacgccacaa ccaccgcgca       60

cggccccctg actccgtcca gtattgatcg ggagagccgg agcgagctct tcggggagca      120

gcgatgcgac cctccgggac ggccggggca gcgctcctgg cgctgctggc tgcgctctgc      180

ccggcgagtc gggctctgga ggaaaagaaa ggtaattatg tggtgacaga tcacggctcg      240

tgcgtccgag cctgtggggc cgacagctat gagatggagg aagacggcgt ccgcaagtgt      300

aagaagtgcg aagggccttg ccgcaaag                                         328


<210>  65
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PPL (exon 22) Probe Sequence

<400>  65
aataaacctg gtggctggag                                                   20


<210>  66
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NTRK3 (exon 14) Probe Sequence

<400>  66
gtcatcagtg gtgaggagga                                                   20


<210>  67
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BCR-ABL35INS mutation-specific forward primer

<400>  67
agatgctgac caactcg                                                      17


<210>  68
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BCR-ABL35INS mutation-specific reverse primer

<400>  68
acaatgttcc aggaatccag                                                   20


<210>  69
<211>  1454
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BCR-ABL alternative splicing (BCR-ABL35INS)

<400>  69
atgatgagtc tccggggctc tatgggtttc tgaatgtcat cgtccactca gccactggat       60

ttaagcagag ttcaaaagcc cttcagcggc cagtagcatc tgactttgag cctcagggtc      120

tgagtgaagc cgctcgttgg aactccaagg aaaaccttct cgctggaccc agtgaaaatg      180

accccaacct tttcgttgca ctgtatgatt ttgtggccag tggagataac actctaagca      240

taactaaagg tgaaaagctc cgggtcttag gctataatca caatggggaa tggtgtgaag      300

cccaaaccaa aaatggccaa ggctgggtcc caagcaacta catcacgcca gtcaacagtc      360

tggagaaaca ctcctggtac catgggcctg tgtcccgcaa tgccgctgag tatctgctga      420

gcagcgggat caatggcagc ttcttggtgc gtgagagtga gagcagtcct ggccagaggt      480

ccatctcgct gagatacgaa gggagggtgt accattacag gatcaacact gcttctgatg      540

gcaagctcta cgtctcctcc gagagccgct tcaacaccct ggccgagttg gttcatcatc      600

attcaacggt ggccgacggg ctcatcacca cgctccatta tccagcccca aagcgcaaca      660

agcccactgt ctatggtgtg tcccccaact acgacaagtg ggagatggaa cgcacggaca      720

tcaccatgaa gcacaagctg ggcgggggcc agtacgggga ggtgtacgag ggcgtgtgga      780

agaaatacag cctgacggtg gccgtgaaga ccttgaagga ggacaccatg gaggtggaag      840

agttcttgaa agaagctgca gtcatgaaag agatcaaaca ccctaacctg gtgcagctcc      900

ttggggtctg cacccgggag cccccgttct atatcatcac tgagttcatg acctacggga      960

acctcctgga ctacctgagg gagtgcaacc ggcaggaggt gaacgccgtg gtgctgctgt     1020

acatggccac tcagatctcg tcagccatgg agtacctgga gaagaaaaac ttcatccaca     1080

gagatcttgc tgcccgaaac tgcctggtag gggagaacca cttggtgaag gtagctgatt     1140

ttggcctgag caggttgatg acaggggaca cctacacagc ccatgctgga gccaagttcc     1200

ccatcaaatg gactgcaccc gagagcctgg cctacaacaa gttctccatc aagtccgacg     1260

tctgggcatt tggagtattg ctttgggaaa ttgctaccta tggcatgtcc ccttacccgg     1320

gaattgacct gtcccaggtg tatgagctgc tagagaagga ctaccgcatg gagcgcccag     1380

aaggctgccc agagaaggtc tatgaactca tgcgagcata ctttgataac cgtgaagaaa     1440

gaacaagata gaag                                                       1454


