                         SEQUENCE LISTING

<110>  Stichting VUmc
 
<120>  Detection of nucleic acid markers in urine using DNA methylation 
       analysis

<130>  P129129PC00

<140>  PCT/NL2021/050784
<141>  2021-12-23

<150>  NL 2027228
<151>  2020-12-24

<160>  21    

<170>  PatentIn version 3.5

<210>  1
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SEPTIN-9 forward

<400>  1
ttcgtcgttg tttttcgc                                                     18


<210>  2
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SEPTIN-9 reverse

<400>  2
gttaaccgcg aaatccg                                                      17


<210>  3
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SEPTIN-9 probe


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  locked nucleic acid (LNA)

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  locked nucleic acid (LNA)

<220>
<221>  misc_feature
<222>  (7)..(7)
<223>  locked nucleic acid (LNA)

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  locked nucleic acid (LNA)

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  locked nucleic acid (LNA)

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  locked nucleic acid (LNA)

<400>  3
gttgtttatt agttattatg t                                                 21


<210>  4
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SDC2 forward

<400>  4
ttcggagtat taatttcgtg tc                                                22


<210>  5
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SDC2 reverse

<400>  5
tacgccccga aaacg                                                        15


<210>  6
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SDC2 probe


<220>
<221>  misc_feature
<222>  (25)..(25)
<223>  minor groove binding probe

<400>  6
agtgtagaaa ttaataagtg agagg                                             25


<210>  7
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ACTB forward

<400>  7
ggtttagtaa gttttttgga ttgtg                                             25


<210>  8
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ACTB reverse

<400>  8
caaaaaccac aacctaataa aaaaaa                                            26


<210>  9
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ACTB probe

<400>  9
accaccaccc aacacacaat aacaaacaca                                        30


<210>  10
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NDRG4 forward

<400>  10
ttttaggttc ggtatcgttt c                                                 21


<210>  11
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NDRG4 reverse

<400>  11
acccgcgtaa atttaacg                                                     18


<210>  12
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NDRG4 probe


<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  minor groove binding probe

<400>  12
cgggtcgagc gtttatat                                                     18


<210>  13
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ALX4 forward

<400>  13
ttttcgttcg tcgtttgc                                                     18


<210>  14
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ALX4 reverse

<400>  14
acgactcgca ataaaaaacg                                                   20


<210>  15
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ALX4 probe

<400>  15
taagttaggt atgaatgttg agattt                                            26


<210>  16
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Vimentin forward

<400>  16
ggcggttcgg gtatc                                                        15


<210>  17
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Vimentin reverse

<400>  17
tataaatacg aataaacgta atcacg                                            26


<210>  18
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Vimentin probe

<400>  18
cgagtcggtc gagttttagt cggagtta                                          28


<210>  19
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TMEFF2 forward

<400>  19
cgtcgggtgt tattgttatc                                                   20


<210>  20
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TMEFF2 reverse


<220>
<221>  misc_feature
<222>  (8)..(8)
<223>  locked nucleic acid (LNA)

<400>  20
cgaaaaccga acaacg                                                       16


<210>  21
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TMEFF2 probe

<400>  21
cgtttttgtt gtcgtcgttc gcgg                                              24


