                         SEQUENCE LISTING

<110>  Maruggi, Giulietta
 
<120>  SELF-AMPLIFYING MESSENGER RNA

<130>  VU66992WO

<140>  TBD
<141>  2021-12-21

<150>  US 63129837
<151>  2020-12-23

<160>  39    

<170>  PatentIn version 3.5

<210>  1
<211>  7561
<212>  DNA
<213>  VEE virus

<400>  1
ataggcggcg catgagagaa gcccagacca attacctacc caaaatggag aaagttcacg       60

ttgacatcga ggaagacagc ccattcctca gagctttgca gcggagcttc ccgcagtttg      120

aggtagaagc caagcaggtc actgataatg accatgctaa tgccagagcg ttttcgcatc      180

tggcttcaaa actgatcgaa acggaggtgg acccatccga cacgatcctt gacattggaa      240

gtgcgcccgc ccgcagaatg tattctaagc acaagtatca ttgtatctgt ccgatgagat      300

gtgcggaaga tccggacaga ttgtataagt atgcaactaa gctgaagaaa aactgtaagg      360

aaataactga taaggaattg gacaagaaaa tgaaggagct cgccgccgtc atgagcgacc      420

ctgacctgga aactgagact atgtgcctcc acgacgacga gtcgtgtcgc tacgaagggc      480

aagtcgctgt ttaccaggat gtatacgcgg ttgacggacc gacaagtctc tatcaccaag      540

ccaataaggg agttagagtc gcctactgga taggctttga caccacccct tttatgttta      600

agaacttggc tggagcatat ccatcatact ctaccaactg ggccgacgaa accgtgttaa      660

cggctcgtaa cataggccta tgcagctctg acgttatgga gcggtcacgt agagggatgt      720

ccattcttag aaagaagtat ttgaaaccat ccaacaatgt tctattctct gttggctcga      780

ccatctacca cgagaagagg gacttactga ggagctggca cctgccgtct gtatttcact      840

tacgtggcaa gcaaaattac acatgtcggt gtgagactat agttagttgc gacgggtacg      900

tcgttaaaag aatagctatc agtccaggcc tgtatgggaa gccttcaggc tatgctgcta      960

cgatgcaccg cgagggattc ttgtgctgca aagtgacaga cacattgaac ggggagaggg     1020

tctcttttcc cgtgtgcacg tatgtgccag ctacattgtg tgaccaaatg actggcatac     1080

tggcaacaga tgtcagtgcg gacgacgcgc aaaaactgct ggttgggctc aaccagcgta     1140

tagtcgtcaa cggtcgcacc cagagaaaca ccaataccat gaaaaattac cttttgcccg     1200

tagtggccca ggcatttgct aggtgggcaa aggaatataa ggaagatcaa gaagatgaaa     1260

ggccactagg actacgagat agacagttag tcatggggtg ttgttgggct tttagaaggc     1320

acaagataac atctatttat aagcgcccgg atacccaaac catcatcaaa gtgaacagcg     1380

atttccactc attcgtgctg cccaggatag gcagtaacac attggagatc gggctgagaa     1440

caagaatcag gaaaatgtta gaggagcaca aggagccgtc acctctcatt accgccgagg     1500

acgtacaaga agctaagtgc gcagccgatg aggctaagga ggtgcgtgaa gccgaggagt     1560

tgcgcgcagc tctaccacct ttggcagctg atgttgagga gcccactctg gaagccgatg     1620

tcgacttgat gttacaagag gctggggccg gctcagtgga gacacctcgt ggcttgataa     1680

aggttaccag ctacgatggc gaggacaaga tcggctctta cgctgtgctt tctccgcagg     1740

ctgtactcaa gagtgaaaaa ttatcttgca tccaccctct cgctgaacaa gtcatagtga     1800

taacacactc tggccgaaaa gggcgttatg ccgtggaacc ataccatggt aaagtagtgg     1860

tgccagaggg acatgcaata cccgtccagg actttcaagc tctgagtgaa agtgccacca     1920

ttgtgtacaa cgaacgtgag ttcgtaaaca ggtacctgca ccatattgcc acacatggag     1980

gagcgctgaa cactgatgaa gaatattaca aaactgtcaa gcccagcgag cacgacggcg     2040

aatacctgta cgacatcgac aggaaacagt gcgtcaagaa agaactagtc actgggctag     2100

ggctcacagg cgagctggtg gatcctccct tccatgaatt cgcctacgag agtctgagaa     2160

cacgaccagc cgctccttac caagtaccaa ccataggggt gtatggcgtg ccaggatcag     2220

gcaagtctgg catcattaaa agcgcagtca ccaaaaaaga tctagtggtg agcgccaaga     2280

aagaaaactg tgcagaaatt ataagggacg tcaagaaaat gaaagggctg gacgtcaatg     2340

ccagaactgt ggactcagtg ctcttgaatg gatgcaaaca ccccgtagag accctgtata     2400

ttgacgaagc ttttgcttgt catgcaggta ctctcagagc gctcatagcc attataagac     2460

ctaaaaaggc agtgctctgc ggggatccca aacagtgcgg tttttttaac atgatgtgcc     2520

tgaaagtgca ttttaaccac gagatttgca cacaagtctt ccacaaaagc atctctcgcc     2580

gttgcactaa atctgtgact tcggtcgtct caaccttgtt ttacgacaaa aaaatgagaa     2640

cgacgaatcc gaaagagact aagattgtga ttgacactac cggcagtacc aaacctaagc     2700

aggacgatct cattctcact tgtttcagag ggtgggtgaa gcagttgcaa atagattaca     2760

aaggcaacga aataatgacg gcagctgcct ctcaagggct gacccgtaaa ggtgtgtatg     2820

ccgttcggta caaggtgaat gaaaatcctc tgtacgcacc cacctcagaa catgtgaacg     2880

tcctactgac ccgcacggag gaccgcatcg tgtggaaaac actagccggc gacccatgga     2940

taaaaacact gactgccaag taccctggga atttcactgc cacgatagag gagtggcaag     3000

cagagcatga tgccatcatg aggcacatct tggagagacc ggaccctacc gacgtcttcc     3060

agaataaggc aaacgtgtgt tgggccaagg ctttagtgcc ggtgctgaag accgctggca     3120

tagacatgac cactgaacaa tggaacactg tggattattt tgaaacggac aaagctcact     3180

cagcagagat agtattgaac caactatgcg tgaggttctt tggactcgat ctggactccg     3240

gtctattttc tgcacccact gttccgttat ccattaggaa taatcactgg gataactccc     3300

cgtcgcctaa catgtacggg ctgaataaag aagtggtccg tcagctctct cgcaggtacc     3360

cacaactgcc tcgggcagtt gccactggaa gagtctatga catgaacact ggtacactgc     3420

gcaattatga tccgcgcata aacctagtac ctgtaaacag aagactgcct catgctttag     3480

tcctccacca taatgaacac ccacagagtg acttttcttc attcgtcagc aaattgaagg     3540

gcagaactgt cctggtggtc ggggaaaagt tgtccgtccc aggcaaaatg gttgactggt     3600

tgtcagaccg gcctgaggct accttcagag ctcggctgga tttaggcatc ccaggtgatg     3660

tgcccaaata tgacataata tttgttaatg tgaggacccc atataaatac catcactatc     3720

agcagtgtga agaccatgcc attaagctta gcatgttgac caagaaagct tgtctgcatc     3780

tgaatcccgg cggaacctgt gtcagcatag gttatggtta cgctgacagg gccagcgaaa     3840

gcatcattgg tgctatagcg cggcagttca agttttcccg ggtatgcaaa ccgaaatcct     3900

cacttgaaga gacggaagtt ctgtttgtat tcattgggta cgatcgcaag gcccgtacgc     3960

acaatcctta caagctttca tcaaccttga ccaacattta tacaggttcc agactccacg     4020

aagccggatg tgcaccctca tatcatgtgg tgcgagggga tattgccacg gccaccgaag     4080

gagtgattat aaatgctgct aacagcaaag gacaacctgg cggaggggtg tgcggagcgc     4140

tgtataagaa attcccggaa agcttcgatt tacagccgat cgaagtagga aaagcgcgac     4200

tggtcaaagg tgcagctaaa catatcattc atgccgtagg accaaacttc aacaaagttt     4260

cggaggttga aggtgacaaa cagttggcag aggcttatga gtccatcgct aagattgtca     4320

acgataacaa ttacaagtca gtagcgattc cactgttgtc caccggcatc ttttccggga     4380

acaaagatcg actaacccaa tcattgaacc atttgctgac agctttagac accactgatg     4440

cagatgtagc catatactgc agggacaaga aatgggaaat gactctcaag gaagcagtgg     4500

ctaggagaga agcagtggag gagatatgca tatccgacga ctcttcagtg acagaacctg     4560

atgcagagct ggtgagggtg catccgaaga gttctttggc tggaaggaag ggctacagca     4620

caagcgatgg caaaactttc tcatatttgg aagggaccaa gtttcaccag gcggccaagg     4680

atatagcaga aattaatgcc atgtggcccg ttgcaacgga ggccaatgag caggtatgca     4740

tgtatatcct cggagaaagc atgagcagta ttaggtcgaa atgccccgtc gaagagtcgg     4800

aagcctccac accacctagc acgctgcctt gcttgtgcat ccatgccatg actccagaaa     4860

gagtacagcg cctaaaagcc tcacgtccag aacaaattac tgtgtgctca tcctttccat     4920

tgccgaagta tagaatcact ggtgtgcaga agatccaatg ctcccagcct atattgttct     4980

caccgaaagt gcctgcgtat attcatccaa ggaagtatct cgtggaaaca ccaccggtag     5040

acgagactcc ggagccatcg gcagagaacc aatccacaga ggggacacct gaacaaccac     5100

cacttataac cgaggatgag accaggacta gaacgcctga gccgatcatc atcgaagagg     5160

aagaagagga tagcataagt ttgctgtcag atggcccgac ccaccaggtg ctgcaagtcg     5220

aggcagacat tcacgggccg ccctctgtat ctagctcatc ctggtccatt cctcatgcat     5280

ccgactttga tgtggacagt ttatccatac ttgacaccct ggagggagct agcgtgacca     5340

gcggggcaac gtcagccgag actaactctt acttcgcaaa gagtatggag tttctggcgc     5400

gaccggtgcc tgcgcctcga acagtattca ggaaccctcc acatcccgct ccgcgcacaa     5460

gaacaccgtc acttgcaccc agcagggcct gctcgagaac cagcctagtt tccaccccgc     5520

caggcgtgaa tagggtgatc actagagagg agctcgaggc gcttaccccg tcacgcactc     5580

ctagcaggtc ggtctcgaga accagcctgg tctccaaccc gccaggcgta aatagggtga     5640

ttacaagaga ggagtttgag gcgttcgtag cacaacaaca atgacggttt gatgcgggtg     5700

catacatctt ttcctccgac accggtcaag ggcatttaca acaaaaatca gtaaggcaaa     5760

cggtgctatc cgaagtggtg ttggagagga ccgaattgga gatttcgtat gccccgcgcc     5820

tcgaccaaga aaaagaagaa ttactacgca agaaattaca gttaaatccc acacctgcta     5880

acagaagcag ataccagtcc aggaaggtgg agaacatgaa agccataaca gctagacgta     5940

ttctgcaagg cctagggcat tatttgaagg cagaaggaaa agtggagtgc taccgaaccc     6000

tgcatcctgt tcctttgtat tcatctagtg tgaaccgtgc cttttcaagc cccaaggtcg     6060

cagtggaagc ctgtaacgcc atgttgaaag agaactttcc gactgtggct tcttactgta     6120

ttattccaga gtacgatgcc tatttggaca tggttgacgg agcttcatgc tgcttagaca     6180

ctgccagttt ttgccctgca aagctgcgca gctttccaaa gaaacactcc tatttggaac     6240

ccacaatacg atcggcagtg ccttcagcga tccagaacac gctccagaac gtcctggcag     6300

ctgccacaaa aagaaattgc aatgtcacgc aaatgagaga attgcccgta ttggattcgg     6360

cggcctttaa tgtggaatgc ttcaagaaat atgcgtgtaa taatgaatat tgggaaacgt     6420

ttaaagaaaa ccccatcagg cttactgaag aaaacgtggt aaattacatt accaaattaa     6480

aaggaccaaa agctgctgct ctttttgcga agacacataa tttgaatatg ttgcaggaca     6540

taccaatgga caggtttgta atggacttaa agagagacgt gaaagtgact ccaggaacaa     6600

aacatactga agaacggccc aaggtacagg tgatccaggc tgccgatccg ctagcaacag     6660

cgtatctgtg cggaatccac cgagagctgg ttaggagatt aaatgcggtc ctgcttccga     6720

acattcatac actgtttgat atgtcggctg aagactttga cgctattata gccgagcact     6780

tccagcctgg ggattgtgtt ctggaaactg acatcgcgtc gtttgataaa agtgaggacg     6840

acgccatggc tctgaccgcg ttaatgattc tggaagactt aggtgtggac gcagagctgt     6900

tgacgctgat tgaggcggct ttcggcgaaa tttcatcaat acatttgccc actaaaacta     6960

aatttaaatt cggagccatg atgaaatctg gaatgttcct cacactgttt gtgaacacag     7020

tcattaacat tgtaatcgca agcagagtgt tgagagaacg gctaaccgga tcaccatgtg     7080

cagcattcat tggagatgac aatatcgtga aaggagtcaa atcggacaaa ttaatggcag     7140

acaggtgcgc cacctggttg aatatggaag tcaagattat agatgctgtg gtgggcgaga     7200

aagcgcctta tttctgtgga gggtttattt tgtgtgactc cgtgaccggc acagcgtgcc     7260

gtgtggcaga ccccctaaaa aggctgttta agcttggcaa acctctggca gcagacgatg     7320

aacatgatga tgacaggaga agggcattgc atgaagagtc aacacgctgg aaccgagtgg     7380

gtattctttc agagctgtgc aaggcagtag aatcaaggta tgaaaccgta ggaacttcca     7440

tcatagttat ggccatgact actctagcta gcagtgttaa atcattcagc tacctgagag     7500

gggcccctat aactctctac ggctaacctg aatggactac gacatagtct agtccgccaa     7560

g                                                                     7561


<210>  2
<211>  7561
<212>  RNA
<213>  VEE virus

<400>  2
auaggcggcg caugagagaa gcccagacca auuaccuacc caaaauggag aaaguucacg       60

uugacaucga ggaagacagc ccauuccuca gagcuuugca gcggagcuuc ccgcaguuug      120

agguagaagc caagcagguc acugauaaug accaugcuaa ugccagagcg uuuucgcauc      180

uggcuucaaa acugaucgaa acggaggugg acccauccga cacgauccuu gacauuggaa      240

gugcgcccgc ccgcagaaug uauucuaagc acaaguauca uuguaucugu ccgaugagau      300

gugcggaaga uccggacaga uuguauaagu augcaacuaa gcugaagaaa aacuguaagg      360

aaauaacuga uaaggaauug gacaagaaaa ugaaggagcu cgccgccguc augagcgacc      420

cugaccugga aacugagacu augugccucc acgacgacga gucgugucgc uacgaagggc      480

aagucgcugu uuaccaggau guauacgcgg uugacggacc gacaagucuc uaucaccaag      540

ccaauaaggg aguuagaguc gccuacugga uaggcuuuga caccaccccu uuuauguuua      600

agaacuuggc uggagcauau ccaucauacu cuaccaacug ggccgacgaa accguguuaa      660

cggcucguaa cauaggccua ugcagcucug acguuaugga gcggucacgu agagggaugu      720

ccauucuuag aaagaaguau uugaaaccau ccaacaaugu ucuauucucu guuggcucga      780

ccaucuacca cgagaagagg gacuuacuga ggagcuggca ccugccgucu guauuucacu      840

uacguggcaa gcaaaauuac acaugucggu gugagacuau aguuaguugc gacggguacg      900

ucguuaaaag aauagcuauc aguccaggcc uguaugggaa gccuucaggc uaugcugcua      960

cgaugcaccg cgagggauuc uugugcugca aagugacaga cacauugaac ggggagaggg     1020

ucucuuuucc cgugugcacg uaugugccag cuacauugug ugaccaaaug acuggcauac     1080

uggcaacaga ugucagugcg gacgacgcgc aaaaacugcu gguugggcuc aaccagcgua     1140

uagucgucaa cggucgcacc cagagaaaca ccaauaccau gaaaaauuac cuuuugcccg     1200

uaguggccca ggcauuugcu aggugggcaa aggaauauaa ggaagaucaa gaagaugaaa     1260

ggccacuagg acuacgagau agacaguuag ucauggggug uuguugggcu uuuagaaggc     1320

acaagauaac aucuauuuau aagcgcccgg auacccaaac caucaucaaa gugaacagcg     1380

auuuccacuc auucgugcug cccaggauag gcaguaacac auuggagauc gggcugagaa     1440

caagaaucag gaaaauguua gaggagcaca aggagccguc accucucauu accgccgagg     1500

acguacaaga agcuaagugc gcagccgaug aggcuaagga ggugcgugaa gccgaggagu     1560

ugcgcgcagc ucuaccaccu uuggcagcug auguugagga gcccacucug gaagccgaug     1620

ucgacuugau guuacaagag gcuggggccg gcucagugga gacaccucgu ggcuugauaa     1680

agguuaccag cuacgauggc gaggacaaga ucggcucuua cgcugugcuu ucuccgcagg     1740

cuguacucaa gagugaaaaa uuaucuugca uccacccucu cgcugaacaa gucauaguga     1800

uaacacacuc uggccgaaaa gggcguuaug ccguggaacc auaccauggu aaaguagugg     1860

ugccagaggg acaugcaaua cccguccagg acuuucaagc ucugagugaa agugccacca     1920

uuguguacaa cgaacgugag uucguaaaca gguaccugca ccauauugcc acacauggag     1980

gagcgcugaa cacugaugaa gaauauuaca aaacugucaa gcccagcgag cacgacggcg     2040

aauaccugua cgacaucgac aggaaacagu gcgucaagaa agaacuaguc acugggcuag     2100

ggcucacagg cgagcuggug gauccucccu uccaugaauu cgccuacgag agucugagaa     2160

cacgaccagc cgcuccuuac caaguaccaa ccauaggggu guauggcgug ccaggaucag     2220

gcaagucugg caucauuaaa agcgcaguca ccaaaaaaga ucuaguggug agcgccaaga     2280

aagaaaacug ugcagaaauu auaagggacg ucaagaaaau gaaagggcug gacgucaaug     2340

ccagaacugu ggacucagug cucuugaaug gaugcaaaca ccccguagag acccuguaua     2400

uugacgaagc uuuugcuugu caugcaggua cucucagagc gcucauagcc auuauaagac     2460

cuaaaaaggc agugcucugc ggggauccca aacagugcgg uuuuuuuaac augaugugcc     2520

ugaaagugca uuuuaaccac gagauuugca cacaagucuu ccacaaaagc aucucucgcc     2580

guugcacuaa aucugugacu ucggucgucu caaccuuguu uuacgacaaa aaaaugagaa     2640

cgacgaaucc gaaagagacu aagauuguga uugacacuac cggcaguacc aaaccuaagc     2700

aggacgaucu cauucucacu uguuucagag ggugggugaa gcaguugcaa auagauuaca     2760

aaggcaacga aauaaugacg gcagcugccu cucaagggcu gacccguaaa gguguguaug     2820

ccguucggua caaggugaau gaaaauccuc uguacgcacc caccucagaa caugugaacg     2880

uccuacugac ccgcacggag gaccgcaucg uguggaaaac acuagccggc gacccaugga     2940

uaaaaacacu gacugccaag uacccuggga auuucacugc cacgauagag gaguggcaag     3000

cagagcauga ugccaucaug aggcacaucu uggagagacc ggacccuacc gacgucuucc     3060

agaauaaggc aaacgugugu ugggccaagg cuuuagugcc ggugcugaag accgcuggca     3120

uagacaugac cacugaacaa uggaacacug uggauuauuu ugaaacggac aaagcucacu     3180

cagcagagau aguauugaac caacuaugcg ugagguucuu uggacucgau cuggacuccg     3240

gucuauuuuc ugcacccacu guuccguuau ccauuaggaa uaaucacugg gauaacuccc     3300

cgucgccuaa cauguacggg cugaauaaag aagugguccg ucagcucucu cgcagguacc     3360

cacaacugcc ucgggcaguu gccacuggaa gagucuauga caugaacacu gguacacugc     3420

gcaauuauga uccgcgcaua aaccuaguac cuguaaacag aagacugccu caugcuuuag     3480

uccuccacca uaaugaacac ccacagagug acuuuucuuc auucgucagc aaauugaagg     3540

gcagaacugu ccuggugguc ggggaaaagu uguccguccc aggcaaaaug guugacuggu     3600

ugucagaccg gccugaggcu accuucagag cucggcugga uuuaggcauc ccaggugaug     3660

ugcccaaaua ugacauaaua uuuguuaaug ugaggacccc auauaaauac caucacuauc     3720

agcaguguga agaccaugcc auuaagcuua gcauguugac caagaaagcu ugucugcauc     3780

ugaaucccgg cggaaccugu gucagcauag guuaugguua cgcugacagg gccagcgaaa     3840

gcaucauugg ugcuauagcg cggcaguuca aguuuucccg gguaugcaaa ccgaaauccu     3900

cacuugaaga gacggaaguu cuguuuguau ucauugggua cgaucgcaag gcccguacgc     3960

acaauccuua caagcuuuca ucaaccuuga ccaacauuua uacagguucc agacuccacg     4020

aagccggaug ugcacccuca uaucaugugg ugcgagggga uauugccacg gccaccgaag     4080

gagugauuau aaaugcugcu aacagcaaag gacaaccugg cggaggggug ugcggagcgc     4140

uguauaagaa auucccggaa agcuucgauu uacagccgau cgaaguagga aaagcgcgac     4200

uggucaaagg ugcagcuaaa cauaucauuc augccguagg accaaacuuc aacaaaguuu     4260

cggagguuga aggugacaaa caguuggcag aggcuuauga guccaucgcu aagauuguca     4320

acgauaacaa uuacaaguca guagcgauuc cacuguuguc caccggcauc uuuuccggga     4380

acaaagaucg acuaacccaa ucauugaacc auuugcugac agcuuuagac accacugaug     4440

cagauguagc cauauacugc agggacaaga aaugggaaau gacucucaag gaagcagugg     4500

cuaggagaga agcaguggag gagauaugca uauccgacga cucuucagug acagaaccug     4560

augcagagcu ggugagggug cauccgaaga guucuuuggc uggaaggaag ggcuacagca     4620

caagcgaugg caaaacuuuc ucauauuugg aagggaccaa guuucaccag gcggccaagg     4680

auauagcaga aauuaaugcc auguggcccg uugcaacgga ggccaaugag cagguaugca     4740

uguauauccu cggagaaagc augagcagua uuaggucgaa augccccguc gaagagucgg     4800

aagccuccac accaccuagc acgcugccuu gcuugugcau ccaugccaug acuccagaaa     4860

gaguacagcg ccuaaaagcc ucacguccag aacaaauuac ugugugcuca uccuuuccau     4920

ugccgaagua uagaaucacu ggugugcaga agauccaaug cucccagccu auauuguucu     4980

caccgaaagu gccugcguau auucauccaa ggaaguaucu cguggaaaca ccaccgguag     5040

acgagacucc ggagccaucg gcagagaacc aauccacaga ggggacaccu gaacaaccac     5100

cacuuauaac cgaggaugag accaggacua gaacgccuga gccgaucauc aucgaagagg     5160

aagaagagga uagcauaagu uugcugucag auggcccgac ccaccaggug cugcaagucg     5220

aggcagacau ucacgggccg cccucuguau cuagcucauc cugguccauu ccucaugcau     5280

ccgacuuuga uguggacagu uuauccauac uugacacccu ggagggagcu agcgugacca     5340

gcggggcaac gucagccgag acuaacucuu acuucgcaaa gaguauggag uuucuggcgc     5400

gaccggugcc ugcgccucga acaguauuca ggaacccucc acaucccgcu ccgcgcacaa     5460

gaacaccguc acuugcaccc agcagggccu gcucgagaac cagccuaguu uccaccccgc     5520

caggcgugaa uagggugauc acuagagagg agcucgaggc gcuuaccccg ucacgcacuc     5580

cuagcagguc ggucucgaga accagccugg ucuccaaccc gccaggcgua aauaggguga     5640

uuacaagaga ggaguuugag gcguucguag cacaacaaca augacgguuu gaugcgggug     5700

cauacaucuu uuccuccgac accggucaag ggcauuuaca acaaaaauca guaaggcaaa     5760

cggugcuauc cgaaguggug uuggagagga ccgaauugga gauuucguau gccccgcgcc     5820

ucgaccaaga aaaagaagaa uuacuacgca agaaauuaca guuaaauccc acaccugcua     5880

acagaagcag auaccagucc aggaaggugg agaacaugaa agccauaaca gcuagacgua     5940

uucugcaagg ccuagggcau uauuugaagg cagaaggaaa aguggagugc uaccgaaccc     6000

ugcauccugu uccuuuguau ucaucuagug ugaaccgugc cuuuucaagc cccaaggucg     6060

caguggaagc cuguaacgcc auguugaaag agaacuuucc gacuguggcu ucuuacugua     6120

uuauuccaga guacgaugcc uauuuggaca ugguugacgg agcuucaugc ugcuuagaca     6180

cugccaguuu uugcccugca aagcugcgca gcuuuccaaa gaaacacucc uauuuggaac     6240

ccacaauacg aucggcagug ccuucagcga uccagaacac gcuccagaac guccuggcag     6300

cugccacaaa aagaaauugc aaugucacgc aaaugagaga auugcccgua uuggauucgg     6360

cggccuuuaa uguggaaugc uucaagaaau augcguguaa uaaugaauau ugggaaacgu     6420

uuaaagaaaa ccccaucagg cuuacugaag aaaacguggu aaauuacauu accaaauuaa     6480

aaggaccaaa agcugcugcu cuuuuugcga agacacauaa uuugaauaug uugcaggaca     6540

uaccaaugga cagguuugua auggacuuaa agagagacgu gaaagugacu ccaggaacaa     6600

aacauacuga agaacggccc aagguacagg ugauccaggc ugccgauccg cuagcaacag     6660

cguaucugug cggaauccac cgagagcugg uuaggagauu aaaugcgguc cugcuuccga     6720

acauucauac acuguuugau augucggcug aagacuuuga cgcuauuaua gccgagcacu     6780

uccagccugg ggauuguguu cuggaaacug acaucgcguc guuugauaaa agugaggacg     6840

acgccauggc ucugaccgcg uuaaugauuc uggaagacuu agguguggac gcagagcugu     6900

ugacgcugau ugaggcggcu uucggcgaaa uuucaucaau acauuugccc acuaaaacua     6960

aauuuaaauu cggagccaug augaaaucug gaauguuccu cacacuguuu gugaacacag     7020

ucauuaacau uguaaucgca agcagagugu ugagagaacg gcuaaccgga ucaccaugug     7080

cagcauucau uggagaugac aauaucguga aaggagucaa aucggacaaa uuaauggcag     7140

acaggugcgc caccugguug aauauggaag ucaagauuau agaugcugug gugggcgaga     7200

aagcgccuua uuucugugga ggguuuauuu ugugugacuc cgugaccggc acagcgugcc     7260

guguggcaga cccccuaaaa aggcuguuua agcuuggcaa accucuggca gcagacgaug     7320

aacaugauga ugacaggaga agggcauugc augaagaguc aacacgcugg aaccgagugg     7380

guauucuuuc agagcugugc aaggcaguag aaucaaggua ugaaaccgua ggaacuucca     7440

ucauaguuau ggccaugacu acucuagcua gcaguguuaa aucauucagc uaccugagag     7500

gggccccuau aacucucuac ggcuaaccug aauggacuac gacauagucu aguccgccaa     7560

g                                                                     7561


<210>  3
<211>  66
<212>  DNA
<213>  VEE virus

<400>  3
tctagaggcc cctataactc tctacggcta acctgaatgg actacgacat agtctagtcc       60

gccaag                                                                  66


<210>  4
<211>  66
<212>  RNA
<213>  VEE virus

<400>  4
ucuagaggcc ccuauaacuc ucuacggcua accugaaugg acuacgacau agucuagucc       60

gccaag                                                                  66


<210>  5
<211>  2439
<212>  DNA
<213>  VEE virus

<400>  5
tctagacggc gcgcccaccc agcggccgca tacagcagca attggcaagc tgcttacata       60

gaactcgcgg cgattggcat gccgccttaa aatttttatt ttatttttct tttcttttcc      120

gaatcggatt ttgtttttaa tatttcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      180

aaaaaagaag agcgtttaaa cacgtgatat ctggcctcat gggccttcct ttcactgccc      240

gctttccagt cgggaaacct gtcgtgccag ctgcattaac atggtcatag ctgtttcctt      300

gcgtattggg cgctctccgc ttcctcgctc actgactcgc tgcgctcggt cgttcgggta      360

aagcctgggg tgcctaatga gcaaaaggcc agcaaaaggc caggaaccgt aaaaaggccg      420

cgttgctggc gtttttccat aggctccgcc cccctgacga gcatcacaaa aatcgacgct      480

caagtcagag gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggaa      540

gctccctcgt gcgctctcct gttccgaccc tgccgcttac cggatacctg tccgcctttc      600

tcccttcggg aagcgtggcg ctttctcata gctcacgctg taggtatctc agttcggtgt      660

aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg      720

ccttatccgg taactatcgt cttgagtcca acccggtaag acacgactta tcgccactgg      780

cagcagccac tggtaacagg attagcagag cgaggtatgt aggcggtgct acagagttct      840

tgaagtggtg gcctaactac ggctacacta gaagaacagt atttggtatc tgcgctctgc      900

tgaagccagt taccttcgga aaaagagttg gtagctcttg atccggcaaa caaaccaccg      960

ctggtagcgg tggttttttt gtttgcaagc agcagattac gcgcagaaaa aaaggatctc     1020

aagaagatcc tttgatcttt tctacggggt ctgacgctca gtggaacgaa aactcacgtt     1080

aagggatttt ggtcatgaat acacggtgcc tgactgcgtt agcaatttaa ctgtgataaa     1140

ctaccgcatt aaagcttatc gatgataagc tgtcaaacat gagaattctt agaaaaactc     1200

atcgagcatc aaatgaaact gcaatttatt catatcagga ttatcaatac catatttttg     1260

aaaaagccgt ttctgtaatg aaggagaaaa ctcaccgagg cagttccata ggatggcaag     1320

atcctggtat cggtctgcga ttccgactcg tccaacatca atacaaccta ttaatttccc     1380

ctcgtcaaaa ataaggttat caagtgagaa atcaccatga gtgacgactg aatccggtga     1440

gaatggcaaa agcttatgca tttctttcca gacttgttca acaggccagc cattacgctc     1500

gtcatcaaaa tcactcgcat caaccaaacc gttattcatt cgtgattgcg cctgagcgag     1560

acgaaatacg cgatcgctgt taaaaggaca attacaaaca ggaatcgaat gcaaccggcg     1620

caggaacact gccagcgcat caacaatatt ttcacctgaa tcaggatatt cttctaatac     1680

ctggaatgct gttttcccgg ggatcgcagt ggtgagtaac catgcatcat caggagtacg     1740

gataaaatgc ttgatggtcg gaagaggcat aaattccgtc agccagttta gtctgaccat     1800

ctcatctgta acatcattgg caacgctacc tttgccatgt ttcagaaaca actctggcgc     1860

atcgggcttc ccatacaatc gatagattgt cgcacctgat tgcccgacat tatcgcgagc     1920

ccatttatac ccatataaat cagcatccat gttggaattt aatcgcggcc tcgagcaaga     1980

cgtttcccgt tgaatatggc tcataacacc ccttgtatta ctgtttatgt aagcagacag     2040

ttttattgtt catgagcgga tacatatttg aatgtattta gaaaaataaa caaatagggg     2100

ttccgcgcac atttccccga aaagtgccac ctaaattgta agcgttaata ttttgttaaa     2160

attcgcgtta aatttttgtt aaatcagctc attttttaac caataggccg aaatcggcaa     2220

aatcccttat aaatcaaaag aatagaccga gatagggttg agtggccgct acagggcgct     2280

cccattcgcc attcaggctg cgcaactgtt gggaagggcg tttcggtgcg ggcctcttcg     2340

ctattacgcc agctggcgaa agggggatgt gctgcaaggc gattaagttg ggtaacgcca     2400

gggttttccc agtcacacgc gtaatacgac tcactatag                            2439


<210>  6
<211>  2439
<212>  RNA
<213>  VEE virus

<400>  6
ucuagacggc gcgcccaccc agcggccgca uacagcagca auuggcaagc ugcuuacaua       60

gaacucgcgg cgauuggcau gccgccuuaa aauuuuuauu uuauuuuucu uuucuuuucc      120

gaaucggauu uuguuuuuaa uauuucaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      180

aaaaaagaag agcguuuaaa cacgugauau cuggccucau gggccuuccu uucacugccc      240

gcuuuccagu cgggaaaccu gucgugccag cugcauuaac auggucauag cuguuuccuu      300

gcguauuggg cgcucuccgc uuccucgcuc acugacucgc ugcgcucggu cguucgggua      360

aagccugggg ugccuaauga gcaaaaggcc agcaaaaggc caggaaccgu aaaaaggccg      420

cguugcuggc guuuuuccau aggcuccgcc ccccugacga gcaucacaaa aaucgacgcu      480

caagucagag guggcgaaac ccgacaggac uauaaagaua ccaggcguuu cccccuggaa      540

gcucccucgu gcgcucuccu guuccgaccc ugccgcuuac cggauaccug uccgccuuuc      600

ucccuucggg aagcguggcg cuuucucaua gcucacgcug uagguaucuc aguucggugu      660

aggucguucg cuccaagcug ggcugugugc acgaaccccc cguucagccc gaccgcugcg      720

ccuuauccgg uaacuaucgu cuugagucca acccgguaag acacgacuua ucgccacugg      780

cagcagccac ugguaacagg auuagcagag cgagguaugu aggcggugcu acagaguucu      840

ugaaguggug gccuaacuac ggcuacacua gaagaacagu auuugguauc ugcgcucugc      900

ugaagccagu uaccuucgga aaaagaguug guagcucuug auccggcaaa caaaccaccg      960

cugguagcgg ugguuuuuuu guuugcaagc agcagauuac gcgcagaaaa aaaggaucuc     1020

aagaagaucc uuugaucuuu ucuacggggu cugacgcuca guggaacgaa aacucacguu     1080

aagggauuuu ggucaugaau acacggugcc ugacugcguu agcaauuuaa cugugauaaa     1140

cuaccgcauu aaagcuuauc gaugauaagc ugucaaacau gagaauucuu agaaaaacuc     1200

aucgagcauc aaaugaaacu gcaauuuauu cauaucagga uuaucaauac cauauuuuug     1260

aaaaagccgu uucuguaaug aaggagaaaa cucaccgagg caguuccaua ggauggcaag     1320

auccugguau cggucugcga uuccgacucg uccaacauca auacaaccua uuaauuuccc     1380

cucgucaaaa auaagguuau caagugagaa aucaccauga gugacgacug aauccgguga     1440

gaauggcaaa agcuuaugca uuucuuucca gacuuguuca acaggccagc cauuacgcuc     1500

gucaucaaaa ucacucgcau caaccaaacc guuauucauu cgugauugcg ccugagcgag     1560

acgaaauacg cgaucgcugu uaaaaggaca auuacaaaca ggaaucgaau gcaaccggcg     1620

caggaacacu gccagcgcau caacaauauu uucaccugaa ucaggauauu cuucuaauac     1680

cuggaaugcu guuuucccgg ggaucgcagu ggugaguaac caugcaucau caggaguacg     1740

gauaaaaugc uugauggucg gaagaggcau aaauuccguc agccaguuua gucugaccau     1800

cucaucugua acaucauugg caacgcuacc uuugccaugu uucagaaaca acucuggcgc     1860

aucgggcuuc ccauacaauc gauagauugu cgcaccugau ugcccgacau uaucgcgagc     1920

ccauuuauac ccauauaaau cagcauccau guuggaauuu aaucgcggcc ucgagcaaga     1980

cguuucccgu ugaauauggc ucauaacacc ccuuguauua cuguuuaugu aagcagacag     2040

uuuuauuguu caugagcgga uacauauuug aauguauuua gaaaaauaaa caaauagggg     2100

uuccgcgcac auuuccccga aaagugccac cuaaauugua agcguuaaua uuuuguuaaa     2160

auucgcguua aauuuuuguu aaaucagcuc auuuuuuaac caauaggccg aaaucggcaa     2220

aaucccuuau aaaucaaaag aauagaccga gauaggguug aguggccgcu acagggcgcu     2280

cccauucgcc auucaggcug cgcaacuguu gggaagggcg uuucggugcg ggccucuucg     2340

cuauuacgcc agcuggcgaa agggggaugu gcugcaaggc gauuaaguug gguaacgcca     2400

ggguuuuccc agucacacgc guaauacgac ucacuauag                            2439


<210>  7
<211>  7561
<212>  DNA
<213>  VEE virus

<400>  7
ataggcggcg catgagagaa gcccagacca attacctacc caaaatggag aaagttcacg       60

ttgacatcga ggaagacagc ccattcctca gagctttgca gcggagcttc ccgcagtttg      120

aggtagaagc caagcaggtc actgataatg accatgctaa tgccagagcg ttttcgcatc      180

tggcttcaaa actgatcgaa acggaggtgg acccatccga cacgatcctt gacattggaa      240

gtgcgcccgc ccgcagaatg tattctaagc acaagtatca ttgtatctgt ccgatgagat      300

gtgcggaaga tccggacaga ttgtataagt atgcaactaa gctgaagaaa aactgtaagg      360

aaataactga taaggaattg gacaagaaaa tgaaggagct cgccgccgtc atgagcgacc      420

ctgacctgga aactgagact atgtgcctcc acgacgacga gtcgtgtcgc tacgaagggc      480

aagtcgctgt ttaccaggat gtatacgcgg ttgacggacc gacaagtctc tatcaccaag      540

ccaataaggg agttagagtc gcctactgga taggctttga caccacccct tttatgttta      600

agaacttggc tggagcatat ccatcatact ctaccaactg ggccgacgaa accgtgttaa      660

cggctcgtaa cataggccta tgcagctctg acgttatgga gcggtcacgt agagggatgt      720

ccattcttag aaagaagtat ttgaaaccat ccaacaatgt tctattctct gttggctcga      780

ccatctacca cgagaagagg gacttactga ggagctggca cctgccgtct gtatttcact      840

tacgtggcaa gcaaaattac acatgtcggt gtgagactat agttagttgc gacgggtacg      900

tcgttaaaag aatagctatc agtccaggcc tgtatgggaa gccttcaggc tatgctgcta      960

cgatgcaccg cgagggattc ttgtgctgca aagtgacaga cacattgaac ggggagaggg     1020

tctcttttcc cgtgtgcacg tatgtgccag ctacattgtg tgaccaaatg actggcatac     1080

tggcaacaga tgtcagtgcg gacgacgcgc aaaaactgct ggttgggctc aaccagcgta     1140

tagtcgtcaa cggtcgcacc cagagaaaca ccaataccat gaaaaattac cttttgcccg     1200

tagtggccca ggcatttgct aggtgggcaa aggaatataa ggaagatcaa gaagatgaaa     1260

ggccactagg actacgagat agacagttag tcatggggtg ttgttgggct tttagaaggc     1320

acaagataac atctatttat aagcgcccgg atacccaaac catcatcaaa gtgaacagcg     1380

atttccactc attcgtgctg cccaggatag gcagtaacac attggagatc gggctgagaa     1440

caagaatcag gaaaatgtta gaggagcaca aggagccgtc acctctcatt accgccgagg     1500

acgtacaaga agctaagtgc gcagccgatg aggctaagga ggtgcgtgaa gccgaggagt     1560

tgcgcgcagc tctaccacct ttggcagctg atgttgagga gcccactctg gaagccgatg     1620

tcgacttgat gttacaagag gctggggccg gctcagtgga gacacctcgt ggcttgataa     1680

aggttaccag ctacgatggc gaggacaaga tcggctctta cgctgtgctt tctccgcagg     1740

ctgtactcaa gagtgaaaaa ttatcttgca tccaccctct cgctgaacaa gtcatagtga     1800

taacacactc tggccgaaaa gggcgttatg ccgtggaacc ataccatggt aaagtagtgg     1860

tgccagaggg acatgcaata cccgtccagg actttcaagc tctgagtgaa agtgccacca     1920

ttgtgtacaa cgaacgtgag ttcgtaaaca ggtacctgca ccatattgcc acacatggag     1980

gagcgctgaa cactgatgaa gaatattaca aaactgtcaa gcccagcgag cacgacggcg     2040

aatacctgta cgacatcgac aggaaacagt gcgtcaagaa agaactagtc actgggctag     2100

ggctcacagg cgagctggtg gatcctccct tccatgaatt cgcctacgag agtctgagaa     2160

cacgaccagc cgctccttac caagtaccaa ccataggggt gtatggcgtg ccaggatcag     2220

gcaagtctgg catcattaaa agcgcagtca ccaaaaaaga tctagtggtg agcgccaaga     2280

aagaaaactg tgcagaaatt ataagggacg tcaagaaaat gaaagggctg gacgtcaatg     2340

ccagaactgt ggactcagtg ctcttgaatg gatgcaaaca ccccgtagag accctgtata     2400

ttgacgaagc ttttgcttgt catgcaggta ctctcagagc gctcatagcc attataagac     2460

ctaaaaaggc agtgctctgc ggggatccca aacagtgcgg tttttttaac atgatgtgcc     2520

tgaaagtgca ttttaaccac gagatttgca cacaagtctt ccacaaaagc atctctcgcc     2580

gttgcactaa atctgtgact tcggtcgtct caaccttgtt ttacgacaaa aaaatgagaa     2640

cgacgaatcc gaaagagact aagattgtga ttgacactac cggcagtacc aaacctaagc     2700

aggacgatct cattctcact tgtttcagag ggtgggtgaa gcagttgcaa atagattaca     2760

aaggcaacga aataatgacg gcagctgcct ctcaagggct gacccgtaaa ggtgtgtatg     2820

ccgttcggta caaggtgaat gaaaatcctc tgtacgcacc cacctcagaa catgtgaacg     2880

tcctactgac ccgcacggag gaccgcatcg tgtggaaaac actagccggc gacccatgga     2940

taaaaacact gactgccaag taccctggga atttcactgc cacgatagag gagtggcaag     3000

cagagcatga tgccatcatg aggcacatct tggagagacc ggaccctacc gacgtcttcc     3060

agaataaggc aaacgtgtgt tgggccaagg ctttagtgcc ggtgctgaag accgctggca     3120

tagacatgac cactgaacaa tggaacactg tggattattt tgaaacggac aaagctcact     3180

cagcagagat agtattgaac caactatgcg tgaggttctt tggactcgat ctggactccg     3240

gtctattttc tgcacccact gttccgttat ccattaggaa taatcactgg gataactccc     3300

cgtcgcctaa catgtacggg ctgaataaag aagtggtccg tcagctctct cgcaggtacc     3360

cacaactgcc tcgggcagtt gccactggaa gagtctatga catgaacact ggtacactgc     3420

gcaattatga tccgcgcata aacctagtac ctgtaaacag aagactgcct catgctttag     3480

tcctccacca taatgaacac ccacagagtg acttttcttc attcgtcagc aaattgaagg     3540

gcagaactgt cctggtggtc ggggaaaagt tgtccgtccc aggcaaaatg gttgactggt     3600

tgtcagaccg gcctgaggct accttcagag ctcggctgga tttaggcatc ccaggtgatg     3660

tgcccaaata tgacataata tttgttaatg tgaggacccc atataaatac catcactatc     3720

agcagtgtga agaccatgcc attaagctta gcatgttgac caagaaagct tgtctgcatc     3780

tgaatcccgg cggaacctgt gtcagcatag gttatggtta cgctgacagg gccagcgaaa     3840

gcatcattgg tgctatagcg cggcagttca agttttcccg ggtatgcaaa ccgaaatcct     3900

cacttgaaga gacggaagtt ctgtttgtat tcattgggta cgatcgcaag gcccgtacgc     3960

acaatcctta caagctttca tcaaccttga ccaacattta tacaggttcc agactccacg     4020

aagccggatg tgcaccctca tatcatgtgg tgcgagggga tattgccacg gccaccgaag     4080

gagtgattat aaatgctgct aacagcaaag gacaacctgg cggaggggtg tgcggagcgc     4140

tgtataagaa attcccggaa agcttcgatt tacagccgat cgaagtagga aaagcgcgac     4200

tggtcaaagg tgcagctaaa catatcattc atgccgtagg accaaacttc aacaaagttt     4260

cggaggttga aggtgacaaa cagttggcag aggcttatga gtccatcgct aagattgtca     4320

acgataacaa ttacaagtca gtagcgattc cactgttgtc caccggcatc ttttccggga     4380

acaaagatcg actaacccaa tcattgaacc atttgctgac agctttagac accactgatg     4440

cagatgtagc catatactgc agggacaaga aatgggaaat gactctcaag gaagcagtgg     4500

ctaggagaga agcagtggag gagatatgca tatccgacga ctcttcagtg acagaacctg     4560

atgcagagct ggtgagggtg catccgaaga gttctttggc tggaaggaag ggctacagca     4620

caagcgatgg caaaactttc tcatatttgg aagggaccaa gtttcaccag gcggccaagg     4680

atatagcaga aattaatgcc atgtggcccg ttgcaacgga ggccaatgag caggtatgca     4740

tgtatatcct cggagaaagc atgagcagta ttaggtcgaa atgccccgtc gaagattcgg     4800

aagcctccac accacctagc acgctgcctt gcttgtgcat ccatgccatg actccagaaa     4860

gagtacagcg cctaaaagcc tcacgtccag aacaaattac tgtgtgctca tcctttccat     4920

tgccgaagta tagaatcact ggtatgcaga agatccaatg ctcccagcct atattgttct     4980

caccgaaagt gcctgcgtat attcatccaa ggaagtatct cgtggaaaca ccaccggtag     5040

acgagactcc ggagccatcg gcagagaacc aatccacaga ggggacacct gaacaaccac     5100

cacttataac cgaggatgag accaggacta gaacgcctga gccgatcatc atcgaagagg     5160

aagaagagga tagcataagt ttgctgtcag atggcccgac ccaccaggtg ctgcaagtcg     5220

aggcagacat tcacgggccg ccctctgtat ctagctcatc ctggtccatt cctcatgcat     5280

ccgactttga tgtggacagt ttatccatac ttgacaccct ggagggagct agcgtgacca     5340

gcggggcaac gtcagccgag actaactctt acttcgcaaa gagtatggag tttctggcgc     5400

gaccggtgcc tgcgcctcga acagtattca ggaaccctcc acatcccgct ccgcgcacaa     5460

gaacaccgtc acttgcaccc agcagggcct gctcgagaac cagcctagtt tccaccccgc     5520

caggcgtgaa tagggtgatc actagagagg agctcgaggc gcttaccccg tcacgcactc     5580

ctagcaggtc ggtctcgaga accagcctgg tctccaaccc gccaggcgta aatagggtga     5640

ttacaagaga ggagtttgag gcgttcgtag cacaacaaca atgacggttt gatgcgggtg     5700

catacatctt ttcctccgac accggtcaag ggcatttaca acaaaaatca gtaaggcaaa     5760

cggtgctatc cgaagtggtg ttggagagga ccgaattgga gatttcgtat gccccgcgcc     5820

tcgaccaaga aaaagaagaa ttactacgca agaaattaca gttaaatccc acacctgcta     5880

acagaagcag ataccagtcc aggaaggtgg agaacatgaa agccataaca gctagacgta     5940

ttctgcaagg cctagggcat tatttgaagg cagaaggaaa agtggagtgc taccgaaccc     6000

tgcatcctgt tcctttgtat tcatctagtg tgaaccgtgc cttttcaagc cccaaggtcg     6060

cagtggaagc ctgtaacgcc atgttgaaag agaactttcc gactgtggct tcttactgta     6120

ttattccaga gtacgatgcc tatttggaca tggttgacgg agcttcatgc tgcttagaca     6180

ctgccagttt ttgccctgca aagctgcgca gctttccaaa gaaacactcc tatttggaac     6240

ccacaatacg atcggcagtg ccttcagcga tccagaacac gctccagaac gtcctggcag     6300

ctgccacaaa aagaaattgc aatgtcacgc aaatgagaga attgcccgta ttggattcgg     6360

cggcctttaa tgtggaatgc ttcaagaaat atgcgtgtaa taatgaatat tgggaaacgt     6420

ttaaagaaaa ccccatcagg cttactgaag aaaacgtggt aaattacatt accaaattaa     6480

aaggaccaaa agctgctgct ctttttgcga agacacataa tttgaatatg ttgcaggaca     6540

taccaatgga caggtttgta atggacttaa agagagacgt gaaagtgact ccaggaacaa     6600

aacatactga agaacggccc aaggtacagg tgatccaggc tgccgatccg ctagcaacag     6660

cgtatctgtg cggaatccac cgagagctgg ttaggagatt aaatgcggtc ctgcttccga     6720

acattcatac actgtttgat atgtcggctg aagactttga cgctattata gccgagcact     6780

tccagcctgg ggattgtgtt ctggaaactg acatcgcgtc gtttgataaa agtgaggacg     6840

acgccatggc tctgaccgcg ttaatgattc tggaagactt aggtgtggac gcagagctgt     6900

tgacgctgat tgaggcggct ttcggcgaaa tttcatcaat acatttgccc actaaaacta     6960

aatttaaatt cggagccatg atgaaatctg gaatgttcct cacactgttt gtgaacacag     7020

tcattaacat tgtaatcgca agcagagtgt tgagagaacg gctaaccgga tcaccatgtg     7080

cagcattcat tggagatgac aatatcgtga aaggagtcaa atcggacaaa ttaatggcag     7140

acaggtgcgc cacctggttg aatatggaag tcaagattat agatgctgtg gtgggcgaga     7200

aagcgcctta tttctgtgga gggtttattt tgtgtgactc cgtgaccggc acagcgtgcc     7260

gtgtggcaga ccccctaaaa aggctgttta agcttggcaa acctctggca gcagacgatg     7320

aacatgatga tgacaggaga agggcattgc atgaagagtc aacacgctgg aaccgagtgg     7380

gtattctttc agagctgtgc aaggcagtag aatcaaggta tgaaaccgta ggaacttcca     7440

tcatagttat ggccatgact actctagcta gcagtgttaa atcattcagc tacctgagag     7500

gggcccctat aactctctac ggctaacctg aatggactac gacatagtct agtccgccaa     7560

g                                                                     7561


<210>  8
<211>  7561
<212>  RNA
<213>  VEE virus

<400>  8
auaggcggcg caugagagaa gcccagacca auuaccuacc caaaauggag aaaguucacg       60

uugacaucga ggaagacagc ccauuccuca gagcuuugca gcggagcuuc ccgcaguuug      120

agguagaagc caagcagguc acugauaaug accaugcuaa ugccagagcg uuuucgcauc      180

uggcuucaaa acugaucgaa acggaggugg acccauccga cacgauccuu gacauuggaa      240

gugcgcccgc ccgcagaaug uauucuaagc acaaguauca uuguaucugu ccgaugagau      300

gugcggaaga uccggacaga uuguauaagu augcaacuaa gcugaagaaa aacuguaagg      360

aaauaacuga uaaggaauug gacaagaaaa ugaaggagcu cgccgccguc augagcgacc      420

cugaccugga aacugagacu augugccucc acgacgacga gucgugucgc uacgaagggc      480

aagucgcugu uuaccaggau guauacgcgg uugacggacc gacaagucuc uaucaccaag      540

ccaauaaggg aguuagaguc gccuacugga uaggcuuuga caccaccccu uuuauguuua      600

agaacuuggc uggagcauau ccaucauacu cuaccaacug ggccgacgaa accguguuaa      660

cggcucguaa cauaggccua ugcagcucug acguuaugga gcggucacgu agagggaugu      720

ccauucuuag aaagaaguau uugaaaccau ccaacaaugu ucuauucucu guuggcucga      780

ccaucuacca cgagaagagg gacuuacuga ggagcuggca ccugccgucu guauuucacu      840

uacguggcaa gcaaaauuac acaugucggu gugagacuau aguuaguugc gacggguacg      900

ucguuaaaag aauagcuauc aguccaggcc uguaugggaa gccuucaggc uaugcugcua      960

cgaugcaccg cgagggauuc uugugcugca aagugacaga cacauugaac ggggagaggg     1020

ucucuuuucc cgugugcacg uaugugccag cuacauugug ugaccaaaug acuggcauac     1080

uggcaacaga ugucagugcg gacgacgcgc aaaaacugcu gguugggcuc aaccagcgua     1140

uagucgucaa cggucgcacc cagagaaaca ccaauaccau gaaaaauuac cuuuugcccg     1200

uaguggccca ggcauuugcu aggugggcaa aggaauauaa ggaagaucaa gaagaugaaa     1260

ggccacuagg acuacgagau agacaguuag ucauggggug uuguugggcu uuuagaaggc     1320

acaagauaac aucuauuuau aagcgcccgg auacccaaac caucaucaaa gugaacagcg     1380

auuuccacuc auucgugcug cccaggauag gcaguaacac auuggagauc gggcugagaa     1440

caagaaucag gaaaauguua gaggagcaca aggagccguc accucucauu accgccgagg     1500

acguacaaga agcuaagugc gcagccgaug aggcuaagga ggugcgugaa gccgaggagu     1560

ugcgcgcagc ucuaccaccu uuggcagcug auguugagga gcccacucug gaagccgaug     1620

ucgacuugau guuacaagag gcuggggccg gcucagugga gacaccucgu ggcuugauaa     1680

agguuaccag cuacgauggc gaggacaaga ucggcucuua cgcugugcuu ucuccgcagg     1740

cuguacucaa gagugaaaaa uuaucuugca uccacccucu cgcugaacaa gucauaguga     1800

uaacacacuc uggccgaaaa gggcguuaug ccguggaacc auaccauggu aaaguagugg     1860

ugccagaggg acaugcaaua cccguccagg acuuucaagc ucugagugaa agugccacca     1920

uuguguacaa cgaacgugag uucguaaaca gguaccugca ccauauugcc acacauggag     1980

gagcgcugaa cacugaugaa gaauauuaca aaacugucaa gcccagcgag cacgacggcg     2040

aauaccugua cgacaucgac aggaaacagu gcgucaagaa agaacuaguc acugggcuag     2100

ggcucacagg cgagcuggug gauccucccu uccaugaauu cgccuacgag agucugagaa     2160

cacgaccagc cgcuccuuac caaguaccaa ccauaggggu guauggcgug ccaggaucag     2220

gcaagucugg caucauuaaa agcgcaguca ccaaaaaaga ucuaguggug agcgccaaga     2280

aagaaaacug ugcagaaauu auaagggacg ucaagaaaau gaaagggcug gacgucaaug     2340

ccagaacugu ggacucagug cucuugaaug gaugcaaaca ccccguagag acccuguaua     2400

uugacgaagc uuuugcuugu caugcaggua cucucagagc gcucauagcc auuauaagac     2460

cuaaaaaggc agugcucugc ggggauccca aacagugcgg uuuuuuuaac augaugugcc     2520

ugaaagugca uuuuaaccac gagauuugca cacaagucuu ccacaaaagc aucucucgcc     2580

guugcacuaa aucugugacu ucggucgucu caaccuuguu uuacgacaaa aaaaugagaa     2640

cgacgaaucc gaaagagacu aagauuguga uugacacuac cggcaguacc aaaccuaagc     2700

aggacgaucu cauucucacu uguuucagag ggugggugaa gcaguugcaa auagauuaca     2760

aaggcaacga aauaaugacg gcagcugccu cucaagggcu gacccguaaa gguguguaug     2820

ccguucggua caaggugaau gaaaauccuc uguacgcacc caccucagaa caugugaacg     2880

uccuacugac ccgcacggag gaccgcaucg uguggaaaac acuagccggc gacccaugga     2940

uaaaaacacu gacugccaag uacccuggga auuucacugc cacgauagag gaguggcaag     3000

cagagcauga ugccaucaug aggcacaucu uggagagacc ggacccuacc gacgucuucc     3060

agaauaaggc aaacgugugu ugggccaagg cuuuagugcc ggugcugaag accgcuggca     3120

uagacaugac cacugaacaa uggaacacug uggauuauuu ugaaacggac aaagcucacu     3180

cagcagagau aguauugaac caacuaugcg ugagguucuu uggacucgau cuggacuccg     3240

gucuauuuuc ugcacccacu guuccguuau ccauuaggaa uaaucacugg gauaacuccc     3300

cgucgccuaa cauguacggg cugaauaaag aagugguccg ucagcucucu cgcagguacc     3360

cacaacugcc ucgggcaguu gccacuggaa gagucuauga caugaacacu gguacacugc     3420

gcaauuauga uccgcgcaua aaccuaguac cuguaaacag aagacugccu caugcuuuag     3480

uccuccacca uaaugaacac ccacagagug acuuuucuuc auucgucagc aaauugaagg     3540

gcagaacugu ccuggugguc ggggaaaagu uguccguccc aggcaaaaug guugacuggu     3600

ugucagaccg gccugaggcu accuucagag cucggcugga uuuaggcauc ccaggugaug     3660

ugcccaaaua ugacauaaua uuuguuaaug ugaggacccc auauaaauac caucacuauc     3720

agcaguguga agaccaugcc auuaagcuua gcauguugac caagaaagcu ugucugcauc     3780

ugaaucccgg cggaaccugu gucagcauag guuaugguua cgcugacagg gccagcgaaa     3840

gcaucauugg ugcuauagcg cggcaguuca aguuuucccg gguaugcaaa ccgaaauccu     3900

cacuugaaga gacggaaguu cuguuuguau ucauugggua cgaucgcaag gcccguacgc     3960

acaauccuua caagcuuuca ucaaccuuga ccaacauuua uacagguucc agacuccacg     4020

aagccggaug ugcacccuca uaucaugugg ugcgagggga uauugccacg gccaccgaag     4080

gagugauuau aaaugcugcu aacagcaaag gacaaccugg cggaggggug ugcggagcgc     4140

uguauaagaa auucccggaa agcuucgauu uacagccgau cgaaguagga aaagcgcgac     4200

uggucaaagg ugcagcuaaa cauaucauuc augccguagg accaaacuuc aacaaaguuu     4260

cggagguuga aggugacaaa caguuggcag aggcuuauga guccaucgcu aagauuguca     4320

acgauaacaa uuacaaguca guagcgauuc cacuguuguc caccggcauc uuuuccggga     4380

acaaagaucg acuaacccaa ucauugaacc auuugcugac agcuuuagac accacugaug     4440

cagauguagc cauauacugc agggacaaga aaugggaaau gacucucaag gaagcagugg     4500

cuaggagaga agcaguggag gagauaugca uauccgacga cucuucagug acagaaccug     4560

augcagagcu ggugagggug cauccgaaga guucuuuggc uggaaggaag ggcuacagca     4620

caagcgaugg caaaacuuuc ucauauuugg aagggaccaa guuucaccag gcggccaagg     4680

auauagcaga aauuaaugcc auguggcccg uugcaacgga ggccaaugag cagguaugca     4740

uguauauccu cggagaaagc augagcagua uuaggucgaa augccccguc gaagauucgg     4800

aagccuccac accaccuagc acgcugccuu gcuugugcau ccaugccaug acuccagaaa     4860

gaguacagcg ccuaaaagcc ucacguccag aacaaauuac ugugugcuca uccuuuccau     4920

ugccgaagua uagaaucacu gguaugcaga agauccaaug cucccagccu auauuguucu     4980

caccgaaagu gccugcguau auucauccaa ggaaguaucu cguggaaaca ccaccgguag     5040

acgagacucc ggagccaucg gcagagaacc aauccacaga ggggacaccu gaacaaccac     5100

cacuuauaac cgaggaugag accaggacua gaacgccuga gccgaucauc aucgaagagg     5160

aagaagagga uagcauaagu uugcugucag auggcccgac ccaccaggug cugcaagucg     5220

aggcagacau ucacgggccg cccucuguau cuagcucauc cugguccauu ccucaugcau     5280

ccgacuuuga uguggacagu uuauccauac uugacacccu ggagggagcu agcgugacca     5340

gcggggcaac gucagccgag acuaacucuu acuucgcaaa gaguauggag uuucuggcgc     5400

gaccggugcc ugcgccucga acaguauuca ggaacccucc acaucccgcu ccgcgcacaa     5460

gaacaccguc acuugcaccc agcagggccu gcucgagaac cagccuaguu uccaccccgc     5520

caggcgugaa uagggugauc acuagagagg agcucgaggc gcuuaccccg ucacgcacuc     5580

cuagcagguc ggucucgaga accagccugg ucuccaaccc gccaggcgua aauaggguga     5640

uuacaagaga ggaguuugag gcguucguag cacaacaaca augacgguuu gaugcgggug     5700

cauacaucuu uuccuccgac accggucaag ggcauuuaca acaaaaauca guaaggcaaa     5760

cggugcuauc cgaaguggug uuggagagga ccgaauugga gauuucguau gccccgcgcc     5820

ucgaccaaga aaaagaagaa uuacuacgca agaaauuaca guuaaauccc acaccugcua     5880

acagaagcag auaccagucc aggaaggugg agaacaugaa agccauaaca gcuagacgua     5940

uucugcaagg ccuagggcau uauuugaagg cagaaggaaa aguggagugc uaccgaaccc     6000

ugcauccugu uccuuuguau ucaucuagug ugaaccgugc cuuuucaagc cccaaggucg     6060

caguggaagc cuguaacgcc auguugaaag agaacuuucc gacuguggcu ucuuacugua     6120

uuauuccaga guacgaugcc uauuuggaca ugguugacgg agcuucaugc ugcuuagaca     6180

cugccaguuu uugcccugca aagcugcgca gcuuuccaaa gaaacacucc uauuuggaac     6240

ccacaauacg aucggcagug ccuucagcga uccagaacac gcuccagaac guccuggcag     6300

cugccacaaa aagaaauugc aaugucacgc aaaugagaga auugcccgua uuggauucgg     6360

cggccuuuaa uguggaaugc uucaagaaau augcguguaa uaaugaauau ugggaaacgu     6420

uuaaagaaaa ccccaucagg cuuacugaag aaaacguggu aaauuacauu accaaauuaa     6480

aaggaccaaa agcugcugcu cuuuuugcga agacacauaa uuugaauaug uugcaggaca     6540

uaccaaugga cagguuugua auggacuuaa agagagacgu gaaagugacu ccaggaacaa     6600

aacauacuga agaacggccc aagguacagg ugauccaggc ugccgauccg cuagcaacag     6660

cguaucugug cggaauccac cgagagcugg uuaggagauu aaaugcgguc cugcuuccga     6720

acauucauac acuguuugau augucggcug aagacuuuga cgcuauuaua gccgagcacu     6780

uccagccugg ggauuguguu cuggaaacug acaucgcguc guuugauaaa agugaggacg     6840

acgccauggc ucugaccgcg uuaaugauuc uggaagacuu agguguggac gcagagcugu     6900

ugacgcugau ugaggcggcu uucggcgaaa uuucaucaau acauuugccc acuaaaacua     6960

aauuuaaauu cggagccaug augaaaucug gaauguuccu cacacuguuu gugaacacag     7020

ucauuaacau uguaaucgca agcagagugu ugagagaacg gcuaaccgga ucaccaugug     7080

cagcauucau uggagaugac aauaucguga aaggagucaa aucggacaaa uuaauggcag     7140

acaggugcgc caccugguug aauauggaag ucaagauuau agaugcugug gugggcgaga     7200

aagcgccuua uuucugugga ggguuuauuu ugugugacuc cgugaccggc acagcgugcc     7260

guguggcaga cccccuaaaa aggcuguuua agcuuggcaa accucuggca gcagacgaug     7320

aacaugauga ugacaggaga agggcauugc augaagaguc aacacgcugg aaccgagugg     7380

guauucuuuc agagcugugc aaggcaguag aaucaaggua ugaaaccgua ggaacuucca     7440

ucauaguuau ggccaugacu acucuagcua gcaguguuaa aucauucagc uaccugagag     7500

gggccccuau aacucucuac ggcuaaccug aauggacuac gacauagucu aguccgccaa     7560

g                                                                     7561


<210>  9
<211>  723
<212>  DNA
<213>  Aequorea victoria

<400>  9
atggtgagca agggcgagga gctgttcacc ggggtggtgc ccatcctggt cgagctggac       60

ggcgacgtaa acggccacaa gttcagcgtg tccggcgagg gcgagggcga tgccacctac      120

ggcaagctga ccctgaagtt catctgcacc accggcaagc tgcccgtgcc ctggcccacc      180

ctcgtgacca ccctgaccta cggcgtgcag tgcttcagcc gctaccccga ccacatgaag      240

cagcacgact tcttcaagtc cgccatgccc gaaggctacg tccaggagcg caccatcttc      300

ttcaaggacg acggcaacta caagacccgc gccgaggtga agttcgaggg cgacaccctg      360

gtgaaccgca tcgagctgaa gggcatcgac ttcaaggagg acggcaacat cctggggcac      420

aagctggagt acaactacaa cagccacaac gtctatatca tggccgacaa gcagaagaac      480

ggcatcaagg tgaacttcaa gatccgccac aacatcgagg acggcagcgt gcagctcgcc      540

gaccactacc agcagaacac ccccatcggc gacggccccg tgctgctgcc cgacaaccac      600

tacctgagca cccagtccgc cctgagcaaa gaccccaacg agaagcgcga tcacatggtc      660

ctgctggagt tcgtgaccgc cgccgggatc actctcggca tggacgagct gtacaagtga      720

taa                                                                    723


<210>  10
<211>  723
<212>  RNA
<213>  Aquaia victoria

<400>  10
auggugagca agggcgagga gcuguucacc gggguggugc ccauccuggu cgagcuggac       60

ggcgacguaa acggccacaa guucagcgug uccggcgagg gcgagggcga ugccaccuac      120

ggcaagcuga cccugaaguu caucugcacc accggcaagc ugcccgugcc cuggcccacc      180

cucgugacca cccugaccua cggcgugcag ugcuucagcc gcuaccccga ccacaugaag      240

cagcacgacu ucuucaaguc cgccaugccc gaaggcuacg uccaggagcg caccaucuuc      300

uucaaggacg acggcaacua caagacccgc gccgagguga aguucgaggg cgacacccug      360

gugaaccgca ucgagcugaa gggcaucgac uucaaggagg acggcaacau ccuggggcac      420

aagcuggagu acaacuacaa cagccacaac gucuauauca uggccgacaa gcagaagaac      480

ggcaucaagg ugaacuucaa gauccgccac aacaucgagg acggcagcgu gcagcucgcc      540

gaccacuacc agcagaacac ccccaucggc gacggccccg ugcugcugcc cgacaaccac      600

uaccugagca cccaguccgc ccugagcaaa gaccccaacg agaagcgcga ucacaugguc      660

cugcuggagu ucgugaccgc cgccgggauc acucucggca uggacgagcu guacaaguga      720

uaa                                                                    723


<210>  11
<211>  239
<212>  PRT
<213>  Aquaia victoria

<400>  11

Met Val Ser Lys Gly Glu Glu Leu Phe Thr Gly Val Val Pro Ile Leu 
1               5                   10                  15      


Val Glu Leu Asp Gly Asp Val Asn Gly His Lys Phe Ser Val Ser Gly 
            20                  25                  30          


Glu Gly Glu Gly Asp Ala Thr Tyr Gly Lys Leu Thr Leu Lys Phe Ile 
        35                  40                  45              


Cys Thr Thr Gly Lys Leu Pro Val Pro Trp Pro Thr Leu Val Thr Thr 
    50                  55                  60                  


Leu Thr Tyr Gly Val Gln Cys Phe Ser Arg Tyr Pro Asp His Met Lys 
65                  70                  75                  80  


Gln His Asp Phe Phe Lys Ser Ala Met Pro Glu Gly Tyr Val Gln Glu 
                85                  90                  95      


Arg Thr Ile Phe Phe Lys Asp Asp Gly Asn Tyr Lys Thr Arg Ala Glu 
            100                 105                 110         


Val Lys Phe Glu Gly Asp Thr Leu Val Asn Arg Ile Glu Leu Lys Gly 
        115                 120                 125             


Ile Asp Phe Lys Glu Asp Gly Asn Ile Leu Gly His Lys Leu Glu Tyr 
    130                 135                 140                 


Asn Tyr Asn Ser His Asn Val Tyr Ile Met Ala Asp Lys Gln Lys Asn 
145                 150                 155                 160 


Gly Ile Lys Val Asn Phe Lys Ile Arg His Asn Ile Glu Asp Gly Ser 
                165                 170                 175     


Val Gln Leu Ala Asp His Tyr Gln Gln Asn Thr Pro Ile Gly Asp Gly 
            180                 185                 190         


Pro Val Leu Leu Pro Asp Asn His Tyr Leu Ser Thr Gln Ser Ala Leu 
        195                 200                 205             


Ser Lys Asp Pro Asn Glu Lys Arg Asp His Met Val Leu Leu Glu Phe 
    210                 215                 220                 


Val Thr Ala Ala Gly Ile Thr Leu Gly Met Asp Glu Leu Tyr Lys 
225                 230                 235                 


<210>  12
<211>  723
<212>  DNA
<213>  Aquaia victoria

<400>  12
atggtgagca agggcgagga gctgttcacc ggggtggtgc ccatcctggt cgagctggac       60

ggcgacgtaa acggccacaa gttcagcgtg tccggcgagg gcgagggcga tgccacctac      120

ggcaagctga ccctgaagtt catctgcacc accggcaagc tgcccgtgcc ctggcccacc      180

ctcgtgacca ccctgaccta cggcgtgcag tgcttcagcc gctaccccga ccacatgaag      240

cagcacgact tcttcaagtc cgccatgccc gaaggctacg tccaggagcg caccatcttc      300

ttcaaggacg acggcaacta caagacccgc gccgaggtga agttcgaggg cgacaccctg      360

gtgaaccgca tcgagctgaa gggcatcgac ttcaaggagg acggcaacat cctggggcac      420

aagctggagt acaactacaa cagccacaac gtctatatca tggccgacaa gcagaagaac      480

ggcatcaagg tgaacttcaa gatccgccac aacatcgagg acggcagcgt gcagctcgcc      540

gaccactacc agcagaacac ccccatcggc gacggccccg tgctgctgcc cgacaaccac      600

tacctgagca cccagtccgc cctgagcaaa gaccccaacg agaagcgcga tcacatggtc      660

ctgctggagt tcgtgaccgc cgccgggatc actctcggca tggacgagct gtacaagtga      720

taa                                                                    723


<210>  13
<211>  723
<212>  RNA
<213>  Aquia victoria

<400>  13
auggugagca agggcgagga gcuguucacc gggguggugc ccauccuggu cgagcuggac       60

ggcgacguaa acggccacaa guucagcgug uccggcgagg gcgagggcga ugccaccuac      120

ggcaagcuga cccugaaguu caucugcacc accggcaagc ugcccgugcc cuggcccacc      180

cucgugacca cccugaccua cggcgugcag ugcuucagcc gcuaccccga ccacaugaag      240

cagcacgacu ucuucaaguc cgccaugccc gaaggcuacg uccaggagcg caccaucuuc      300

uucaaggacg acggcaacua caagacccgc gccgagguga aguucgaggg cgacacccug      360

gugaaccgca ucgagcugaa gggcaucgac uucaaggagg acggcaacau ccuggggcac      420

aagcuggagu acaacuacaa cagccacaac gucuauauca uggccgacaa gcagaagaac      480

ggcaucaagg ugaacuucaa gauccgccac aacaucgagg acggcagcgu gcagcucgcc      540

gaccacuacc agcagaacac ccccaucggc gacggccccg ugcugcugcc cgacaaccac      600

uaccugagca cccaguccgc ccugagcaaa gaccccaacg agaagcgcga ucacaugguc      660

cugcuggagu ucgugaccgc cgccgggauc acucucggca uggacgagcu guacaaguga      720

uaa                                                                    723


<210>  14
<211>  239
<212>  PRT
<213>  Aquaia victoria

<400>  14

Met Val Ser Lys Gly Glu Glu Leu Phe Thr Gly Val Val Pro Ile Leu 
1               5                   10                  15      


Val Glu Leu Asp Gly Asp Val Asn Gly His Lys Phe Ser Val Ser Gly 
            20                  25                  30          


Glu Gly Glu Gly Asp Ala Thr Tyr Gly Lys Leu Thr Leu Lys Phe Ile 
        35                  40                  45              


Cys Thr Thr Gly Lys Leu Pro Val Pro Trp Pro Thr Leu Val Thr Thr 
    50                  55                  60                  


Leu Thr Tyr Gly Val Gln Cys Phe Ser Arg Tyr Pro Asp His Met Lys 
65                  70                  75                  80  


Gln His Asp Phe Phe Lys Ser Ala Met Pro Glu Gly Tyr Val Gln Glu 
                85                  90                  95      


Arg Thr Ile Phe Phe Lys Asp Asp Gly Asn Tyr Lys Thr Arg Ala Glu 
            100                 105                 110         


Val Lys Phe Glu Gly Asp Thr Leu Val Asn Arg Ile Glu Leu Lys Gly 
        115                 120                 125             


Ile Asp Phe Lys Glu Asp Gly Asn Ile Leu Gly His Lys Leu Glu Tyr 
    130                 135                 140                 


Asn Tyr Asn Ser His Asn Val Tyr Ile Met Ala Asp Lys Gln Lys Asn 
145                 150                 155                 160 


Gly Ile Lys Val Asn Phe Lys Ile Arg His Asn Ile Glu Asp Gly Ser 
                165                 170                 175     


Val Gln Leu Ala Asp His Tyr Gln Gln Asn Thr Pro Ile Gly Asp Gly 
            180                 185                 190         


Pro Val Leu Leu Pro Asp Asn His Tyr Leu Ser Thr Gln Ser Ala Leu 
        195                 200                 205             


Ser Lys Asp Pro Asn Glu Lys Arg Asp His Met Val Leu Leu Glu Phe 
    210                 215                 220                 


Val Thr Ala Ala Gly Ile Thr Leu Gly Met Asp Glu Leu Tyr Lys 
225                 230                 235                 


<210>  15
<211>  696
<212>  DNA
<213>  Influenza A virus

<400>  15
atggacccta atacggtctc ttctttccaa gtggattgct ttctgtggca tgttagaaag       60

agagtggctg atcaagaatt gggtgatgca ccgttcttgg atagactgcg acgcgatcag      120

aagtcccttc gcggtagagg cagcacgctt gggttggaca tcaaaactgc gactcgagcc      180

gggaaacaaa ttgtagagag gattcttaag gaggaaagtg acgaggcact caaaatgaca      240

atggcaagcg taccggccag tcggtatttg acagacatga ctctcgaaga gatgtcacga      300

gattggtcca tgctcatacc gaagcagaag gtggccggtc ctctctgtat tagaatggat      360

caggcgatta tggataagaa tatcattttg aaggccaatt tttctgtcat tttcgacaga      420

ctggaaacat tgattctgct ccgggctttc accgaggaag gtgcaatcgt aggtgagatc      480

agtccgctcc ctagccttcc cggtcatacc gcagaggatg ttaaaaacgc tgtgggtgtt      540

ttgattgggg gcttggagtg gaacgacaac acagtcaggg tgagcgagac acttcaacgg      600

tttgcatggc ggagtagtaa cgagaacgga cgcccgcccc tcacaccaaa gcagaaacga      660

gagatggcag gaactatccg atctgaggtc tgataa                                696


<210>  16
<211>  696
<212>  RNA
<213>  Influenza A virus

<400>  16
auggacccua auacggucuc uucuuuccaa guggauugcu uucuguggca uguuagaaag       60

agaguggcug aucaagaauu gggugaugca ccguucuugg auagacugcg acgcgaucag      120

aagucccuuc gcgguagagg cagcacgcuu ggguuggaca ucaaaacugc gacucgagcc      180

gggaaacaaa uuguagagag gauucuuaag gaggaaagug acgaggcacu caaaaugaca      240

auggcaagcg uaccggccag ucgguauuug acagacauga cucucgaaga gaugucacga      300

gauuggucca ugcucauacc gaagcagaag guggccgguc cucucuguau uagaauggau      360

caggcgauua uggauaagaa uaucauuuug aaggccaauu uuucugucau uuucgacaga      420

cuggaaacau ugauucugcu ccgggcuuuc accgaggaag gugcaaucgu aggugagauc      480

aguccgcucc cuagccuucc cggucauacc gcagaggaug uuaaaaacgc uguggguguu      540

uugauugggg gcuuggagug gaacgacaac acagucaggg ugagcgagac acuucaacgg      600

uuugcauggc ggaguaguaa cgagaacgga cgcccgcccc ucacaccaaa gcagaaacga      660

gagauggcag gaacuauccg aucugagguc ugauaa                                696


<210>  17
<211>  230
<212>  PRT
<213>  Influenza A virus

<400>  17

Met Asp Pro Asn Thr Val Ser Ser Phe Gln Val Asp Cys Phe Leu Trp 
1               5                   10                  15      


His Val Arg Lys Arg Val Ala Asp Gln Glu Leu Gly Asp Ala Pro Phe 
            20                  25                  30          


Leu Asp Arg Leu Arg Arg Asp Gln Lys Ser Leu Arg Gly Arg Gly Ser 
        35                  40                  45              


Thr Leu Gly Leu Asp Ile Lys Thr Ala Thr Arg Ala Gly Lys Gln Ile 
    50                  55                  60                  


Val Glu Arg Ile Leu Lys Glu Glu Ser Asp Glu Ala Leu Lys Met Thr 
65                  70                  75                  80  


Met Ala Ser Val Pro Ala Ser Arg Tyr Leu Thr Asp Met Thr Leu Glu 
                85                  90                  95      


Glu Met Ser Arg Asp Trp Ser Met Leu Ile Pro Lys Gln Lys Val Ala 
            100                 105                 110         


Gly Pro Leu Cys Ile Arg Met Asp Gln Ala Ile Met Asp Lys Asn Ile 
        115                 120                 125             


Ile Leu Lys Ala Asn Phe Ser Val Ile Phe Asp Arg Leu Glu Thr Leu 
    130                 135                 140                 


Ile Leu Leu Arg Ala Phe Thr Glu Glu Gly Ala Ile Val Gly Glu Ile 
145                 150                 155                 160 


Ser Pro Leu Pro Ser Leu Pro Gly His Thr Ala Glu Asp Val Lys Asn 
                165                 170                 175     


Ala Val Gly Val Leu Ile Gly Gly Leu Glu Trp Asn Asp Asn Thr Val 
            180                 185                 190         


Arg Val Ser Glu Thr Leu Gln Arg Phe Ala Trp Arg Ser Ser Asn Glu 
        195                 200                 205             


Asn Gly Arg Pro Pro Leu Thr Pro Lys Gln Lys Arg Glu Met Ala Gly 
    210                 215                 220                 


Thr Ile Arg Ser Glu Val 
225                 230 


<210>  18
<211>  276
<212>  DNA
<213>  Influenza 1918 strain

<400>  18
atgggacaag agcaggacac accgtggatt ctgtctaccg gacatataag tacgcaaaag       60

cgcgaggatg ggcagcagac tccccggctc gagcaccaca atagtacacg gcttatggac      120

cattgccaga agacaatgaa ccaggtagta atgccaaagc aaatcgtcta ttggaaacaa      180

tggctctctc tgaggagtcc cacacctgtg tccctgaaga cccgcgtctt gaaaaggtgg      240

cgcttgttct ctaaacatga gtggacatct tgataa                                276


<210>  19
<211>  276
<212>  RNA
<213>  Influenza 1918 strain

<400>  19
augggacaag agcaggacac accguggauu cugucuaccg gacauauaag uacgcaaaag       60

cgcgaggaug ggcagcagac uccccggcuc gagcaccaca auaguacacg gcuuauggac      120

cauugccaga agacaaugaa ccagguagua augccaaagc aaaucgucua uuggaaacaa      180

uggcucucuc ugaggagucc cacaccugug ucccugaaga cccgcgucuu gaaaaggugg      240

cgcuuguucu cuaaacauga guggacaucu ugauaa                                276


<210>  20
<211>  90
<212>  PRT
<213>  Influenza 1918 strain

<400>  20

Met Gly Gln Glu Gln Asp Thr Pro Trp Ile Leu Ser Thr Gly His Ile 
1               5                   10                  15      


Ser Thr Gln Lys Arg Glu Asp Gly Gln Gln Thr Pro Arg Leu Glu His 
            20                  25                  30          


His Asn Ser Thr Arg Leu Met Asp His Cys Gln Lys Thr Met Asn Gln 
        35                  40                  45              


Val Val Met Pro Lys Gln Ile Val Tyr Trp Lys Gln Trp Leu Ser Leu 
    50                  55                  60                  


Arg Ser Pro Thr Pro Val Ser Leu Lys Thr Arg Val Leu Lys Arg Trp 
65                  70                  75                  80  


Arg Leu Phe Ser Lys His Glu Trp Thr Ser 
                85                  90  


<210>  21
<211>  576
<212>  DNA
<213>  Vaccinia virus

<400>  21
atgagtaaaa tatatattga cgaacggagt aacgctgaga tcgtttgtga ggctattaag       60

acaataggga tcgaaggagc gacggcggcg caactcaccc gccagttgaa tatggaaaaa      120

cgagaagtca ataaggcgct gtatgacctc cagcgatcag ccatggttta ctctagtgat      180

gatattccac caagatggtt catgacgacc gaggctgata aacctgatgc agatgcaatg      240

gccgacgtca ttattgacga tgtgagccgc gagaagtcca tgcgcgagga tcataaatct      300

tttgatgatg tcatcccggc caaaaaaata atcgactgga aaggagcgaa tcccgtgacc      360

gtcataaacg agtattgcca gataacacga cgagattgga gcttcaggat tgagtccgtt      420

ggtccgtcta actctcccac cttctatgcg tgtgttgaca tagacggtag ggtctttgac      480

aaagctgatg gtaaatccaa gcgagacgcc aagaataatg cagccaaact cgccgtagat      540

aagttgctgg gatacgtgat tatccgattc taataa                                576


<210>  22
<211>  576
<212>  RNA
<213>  Vaccinia virus

<400>  22
augaguaaaa uauauauuga cgaacggagu aacgcugaga ucguuuguga ggcuauuaag       60

acaauaggga ucgaaggagc gacggcggcg caacucaccc gccaguugaa uauggaaaaa      120

cgagaaguca auaaggcgcu guaugaccuc cagcgaucag ccaugguuua cucuagugau      180

gauauuccac caagaugguu caugacgacc gaggcugaua aaccugaugc agaugcaaug      240

gccgacguca uuauugacga ugugagccgc gagaagucca ugcgcgagga ucauaaaucu      300

uuugaugaug ucaucccggc caaaaaaaua aucgacugga aaggagcgaa ucccgugacc      360

gucauaaacg aguauugcca gauaacacga cgagauugga gcuucaggau ugaguccguu      420

gguccgucua acucucccac cuucuaugcg uguguugaca uagacgguag ggucuuugac      480

aaagcugaug guaaauccaa gcgagacgcc aagaauaaug cagccaaacu cgccguagau      540

aaguugcugg gauacgugau uauccgauuc uaauaa                                576


<210>  23
<211>  190
<212>  PRT
<213>  Vaccinia

<400>  23

Met Ser Lys Ile Tyr Ile Asp Glu Arg Ser Asn Ala Glu Ile Val Cys 
1               5                   10                  15      


Glu Ala Ile Lys Thr Ile Gly Ile Glu Gly Ala Thr Ala Ala Gln Leu 
            20                  25                  30          


Thr Arg Gln Leu Asn Met Glu Lys Arg Glu Val Asn Lys Ala Leu Tyr 
        35                  40                  45              


Asp Leu Gln Arg Ser Ala Met Val Tyr Ser Ser Asp Asp Ile Pro Pro 
    50                  55                  60                  


Arg Trp Phe Met Thr Thr Glu Ala Asp Lys Pro Asp Ala Asp Ala Met 
65                  70                  75                  80  


Ala Asp Val Ile Ile Asp Asp Val Ser Arg Glu Lys Ser Met Arg Glu 
                85                  90                  95      


Asp His Lys Ser Phe Asp Asp Val Ile Pro Ala Lys Lys Ile Ile Asp 
            100                 105                 110         


Trp Lys Gly Ala Asn Pro Val Thr Val Ile Asn Glu Tyr Cys Gln Ile 
        115                 120                 125             


Thr Arg Arg Asp Trp Ser Phe Arg Ile Glu Ser Val Gly Pro Ser Asn 
    130                 135                 140                 


Ser Pro Thr Phe Tyr Ala Cys Val Asp Ile Asp Gly Arg Val Phe Asp 
145                 150                 155                 160 


Lys Ala Asp Gly Lys Ser Lys Arg Asp Ala Lys Asn Asn Ala Ala Lys 
                165                 170                 175     


Leu Ala Val Asp Lys Leu Leu Gly Tyr Val Ile Ile Arg Phe 
            180                 185                 190 


<210>  24
<211>  1026
<212>  DNA
<213>  Ebola virus

<400>  24
atgacgacgc ggacaaaagg ccgaggccac actgcggtca caacccagaa tgacaggatg       60

cccggtccgg aattgtcagg ctggatcagc gaacaactta tgacggggag gatacccgta      120

agtgatatat tctgcgacat agagaataac ccgggtcttt gccacgtaag ccagatgcaa      180

cagacaaaac cgaaccccaa aacgcgcaac agtcaaaccc agaccgaccc catttgtaac      240

catagcttcg aagaggttgt tcaaactctg gcaagcctgg ctacagtcgt ccaacaacag      300

acaatagctt ccgaaagctt ggagcagcgc ataacgtctt tggaaaacgg attgaaacca      360

gtttacgaca tggcgaaaac tataagctca cttaacaggg tctgtgcgga aatggtcgcc      420

aagtacgacc ttctcgttat gactactggc cgagcgaccg ccactgccgc agcgacagaa      480

gcatattggg cagagcatgg acagccaccc ccagggcctt ctttgtacga ggaatccacc      540

atacgaggaa agatagaaag tagagatgaa accgtgcctc agtctgtgcg agaggcgttt      600

aacaatcttg actctacaac atcattgaca gaagaaaact tcggtaaacc agacataagc      660

gcgaaggacc ttcgaaatat catgtacgac caccttccgg ggttcggaac cgcgtttcac      720

caactggttc aagtgatctg taagctcggt aaagattcta atagtcttga catcattcac      780

gccgagtttc aggccagtct ggcggagggg gattcaccac agtgtgcact tatacaaatt      840

accaaacggg tgccgatttt ccaggatgcc gcgccccctg ttattcacat tcggtccagg      900

ggcgatatcc cgagagcgtg ccaaaagtcc ctgcgccctg taccgcccag tccaaagatt      960

gaccgaggct gggtttgtgt cttccagttg caggacggaa agacactcgg gttgaagata     1020

tgataa                                                                1026


<210>  25
<211>  1026
<212>  RNA
<213>  Ebola virus

<400>  25
augacgacgc ggacaaaagg ccgaggccac acugcgguca caacccagaa ugacaggaug       60

cccgguccgg aauugucagg cuggaucagc gaacaacuua ugacggggag gauacccgua      120

agugauauau ucugcgacau agagaauaac ccgggucuuu gccacguaag ccagaugcaa      180

cagacaaaac cgaaccccaa aacgcgcaac agucaaaccc agaccgaccc cauuuguaac      240

cauagcuucg aagagguugu ucaaacucug gcaagccugg cuacagucgu ccaacaacag      300

acaauagcuu ccgaaagcuu ggagcagcgc auaacgucuu uggaaaacgg auugaaacca      360

guuuacgaca uggcgaaaac uauaagcuca cuuaacaggg ucugugcgga aauggucgcc      420

aaguacgacc uucucguuau gacuacuggc cgagcgaccg ccacugccgc agcgacagaa      480

gcauauuggg cagagcaugg acagccaccc ccagggccuu cuuuguacga ggaauccacc      540

auacgaggaa agauagaaag uagagaugaa accgugccuc agucugugcg agaggcguuu      600

aacaaucuug acucuacaac aucauugaca gaagaaaacu ucgguaaacc agacauaagc      660

gcgaaggacc uucgaaauau cauguacgac caccuuccgg gguucggaac cgcguuucac      720

caacugguuc aagugaucug uaagcucggu aaagauucua auagucuuga caucauucac      780

gccgaguuuc aggccagucu ggcggagggg gauucaccac agugugcacu uauacaaauu      840

accaaacggg ugccgauuuu ccaggaugcc gcgcccccug uuauucacau ucgguccagg      900

ggcgauaucc cgagagcgug ccaaaagucc cugcgcccug uaccgcccag uccaaagauu      960

gaccgaggcu ggguuugugu cuuccaguug caggacggaa agacacucgg guugaagaua     1020

ugauaa                                                                1026


<210>  26
<211>  340
<212>  PRT
<213>  Ebola virus

<400>  26

Met Thr Thr Arg Thr Lys Gly Arg Gly His Thr Ala Val Thr Thr Gln 
1               5                   10                  15      


Asn Asp Arg Met Pro Gly Pro Glu Leu Ser Gly Trp Ile Ser Glu Gln 
            20                  25                  30          


Leu Met Thr Gly Arg Ile Pro Val Ser Asp Ile Phe Cys Asp Ile Glu 
        35                  40                  45              


Asn Asn Pro Gly Leu Cys His Val Ser Gln Met Gln Gln Thr Lys Pro 
    50                  55                  60                  


Asn Pro Lys Thr Arg Asn Ser Gln Thr Gln Thr Asp Pro Ile Cys Asn 
65                  70                  75                  80  


His Ser Phe Glu Glu Val Val Gln Thr Leu Ala Ser Leu Ala Thr Val 
                85                  90                  95      


Val Gln Gln Gln Thr Ile Ala Ser Glu Ser Leu Glu Gln Arg Ile Thr 
            100                 105                 110         


Ser Leu Glu Asn Gly Leu Lys Pro Val Tyr Asp Met Ala Lys Thr Ile 
        115                 120                 125             


Ser Ser Leu Asn Arg Val Cys Ala Glu Met Val Ala Lys Tyr Asp Leu 
    130                 135                 140                 


Leu Val Met Thr Thr Gly Arg Ala Thr Ala Thr Ala Ala Ala Thr Glu 
145                 150                 155                 160 


Ala Tyr Trp Ala Glu His Gly Gln Pro Pro Pro Gly Pro Ser Leu Tyr 
                165                 170                 175     


Glu Glu Ser Thr Ile Arg Gly Lys Ile Glu Ser Arg Asp Glu Thr Val 
            180                 185                 190         


Pro Gln Ser Val Arg Glu Ala Phe Asn Asn Leu Asp Ser Thr Thr Ser 
        195                 200                 205             


Leu Thr Glu Glu Asn Phe Gly Lys Pro Asp Ile Ser Ala Lys Asp Leu 
    210                 215                 220                 


Arg Asn Ile Met Tyr Asp His Leu Pro Gly Phe Gly Thr Ala Phe His 
225                 230                 235                 240 


Gln Leu Val Gln Val Ile Cys Lys Leu Gly Lys Asp Ser Asn Ser Leu 
                245                 250                 255     


Asp Ile Ile His Ala Glu Phe Gln Ala Ser Leu Ala Glu Gly Asp Ser 
            260                 265                 270         


Pro Gln Cys Ala Leu Ile Gln Ile Thr Lys Arg Val Pro Ile Phe Gln 
        275                 280                 285             


Asp Ala Ala Pro Pro Val Ile His Ile Arg Ser Arg Gly Asp Ile Pro 
    290                 295                 300                 


Arg Ala Cys Gln Lys Ser Leu Arg Pro Val Pro Pro Ser Pro Lys Ile 
305                 310                 315                 320 


Asp Arg Gly Trp Val Cys Val Phe Gln Leu Gln Asp Gly Lys Thr Leu 
                325                 330                 335     


Gly Leu Lys Ile 
            340 


<210>  27
<211>  375
<212>  RNA
<213>  PRRS virus

<400>  27
augccgaaua auaacgguaa gcaacagaag aagaaaaagg guaauggaca acccguuaac       60

caacuuugcc agaugcuggg uaagauaauu gcgcaacaaa accaaucaag ggggaagggg      120

ccagggaaga agaauagaaa gaaaaauccc gaaaaacccc auuuuccuuu ggcaacggag      180

gacgauguac gacaucauuu cacccccagc gagaggcaac uuugucugag uagcauucaa      240

accgccuuua aucaaggcgc ugggacuugc gcccuuagug acucuggucg aaucucauac      300

accguagaau uuagucuccc gacccagcau acuguucgac ugauccgagc caccgccucu      360

ccuucugcuu gauaa                                                       375


<210>  28
<211>  639
<212>  RNA
<213>  Homo sapiens

<400>  28
augguugccc auaaucaggu agcugcggac aaugccgucu ccaccgcggc ugaaccucgc       60

cggaggcccg aaccgaguuc aaguaguucc aguagucccg ccgcuccugc uaggccgaga      120

cccugucccg ccguuccagc cccugcacca ggagauacac acuuuaggac uuuccggagu      180

cacgcggacu auagacgcau cacacgcgca ucugcguugc uggacgcgug cgguuucuac      240

uggggaccuc ucaguguaca cggggcucac gaaaggcuuc gagcggagcc cguugguacg      300

uuucuuguuc gagacuccag gcagcgaaau ugcuuuuuug cucucagcgu caagauggcc      360

uccggaccga cuucaaucag aguucacuuc caagcaggua gguuucauuu ggacggaucu      420

cgcgagaguu ucgacugccu cuuugaacuu cuggagcauu auguugcugc gcccaggcga      480

auguugggug cgccccuccg ccaacggagg guccgaccgc ugcaagaguu guguaggcaa      540

cgcauuguag cuaccguugg uagagaaaac cuggcuagga uuccucuuaa cccggugcuu      600

cgggauuauc ucuccagcuu cccauuccaa auaugauaa                             639


<210>  29
<211>  1965
<212>  RNA
<213>  Homo sapiens

<400>  29
auguucacuc uccaagauuc uuacguuaaa cagaugguaa ugagcuugcg gguuucagag       60

uugcaaguuc uuuuggguua cgccggacga aauaaacacg ggaggaaaca cgaguugcuu      120

acaaaggcuc ugcaucugcu uaaagcgggg ugcucaccag ccguucagau gaaaauaaaa      180

gagcuguauc gccgacgguu uccucaaaaa aucaugaccc cggcggacuu gucaauuccu      240

aaugugcaca guucucccau gcccgcgacc cugucuccca guacaauccc acaacugacc      300

uaugauggcc acccugcguc aaguccucuc uugccggucu cacuucuggg uccgaagcau      360

gaguuggagc uuccucaucu cacauccgcg uugcacccug uccauccuga caucaaauug      420

caaaagcuuc cauucuacga ccuccuggac gagcuuauca agccaacgag ccucgcgucu      480

gacaacucuc agcgauuuag ggagacgugc uucgcguucg cacugacccc gcaacaggua      540

caacagauca gcucgucuau ggauauauca ggcacgaagu gcgacuucac uguccaagua      600

cagcuucggu uuugccucuc agaaacaucc ugcccucagg aggaucacuu cccuccgaac      660

cuuugcguca aggugaacac gaagccaugu ucucucccgg gauauuugcc uccuaccaag      720

aauggcguug agccuaaacg ccccucccga ccgaucaaca uuaccucauu gguccgcuug      780

ucaacuaccg ucccgaauac uauuguggug aguuggacag cagagauagg ucgaaauuac      840

ucaauggcgg uuuaucuggu aaagcagcug agcagcacug ucuugcugca gagacuccgc      900

gccaagggua uacgaaaccc ggaucacucc cgagcauuga ucaaggaaaa acucacagcg      960

gauccagaca gcgagauagc caccaccucc uugcggguua gccucuugug uccguugggu     1020

aagaugcgac ugaccauucc uugcagggca cucacguguu cacaucucca auguuuugac     1080

gccacguugu auauacagau gaaugaaaag aaaccgacuu ggguuugucc agugugugau     1140

aagaaagcac cauaugaaca ucuuaucaua gauggccugu uuauggagau ucugaaguau     1200

ugcacugauu gugaugaaau ccaguucaaa gaagauggua cgugggcucc caugagaagu     1260

aaaaaggagg ugcaagaagu uagcgcgagc uacaacgggg uggaugggug cuugaguucc     1320

acuuuggaac accaaguggc cucccaucac caguccagca auaagaacaa gaaggucgaa     1380

guaaucgacc ugacuauuga uucauccucc gacgaggagg aagaggaacc uagcgccaag     1440

cgcacaugcc cuucacuuuc ucccacguca ccuuugaaca auaagggaau uuugucuuug     1500

ccccaccaag cuuccccggu guccaggaca ccaagccucc ccgccguuga uaccuccuau     1560

auaaauacgu cacugauuca ggacuaucgc cacccauuuc acaugacccc uaugcccuau     1620

gaucugcaag gacuggacuu cuucccguuu uuguccggag auaaucagca uuacaacacu     1680

agucuucuug cagccgcggc agcggcggua agcgaugacc aggaucuucu gcacucuagu     1740

agauuuuucc cguacaccuc cucacaaaug uuucuggauc agcuuagugc uggcggaagc     1800

acuucucucc cgacuaccaa cggcaguuca uccggcucaa acucuagccu cgugucuagu     1860

aauagucuua gagagaguca uucacauacc guuacgaaua ggucuucaac cgauaccgcg     1920

ucaaucuuug gcauuauucc ugauauaaua ucacucgauu gauaa                     1965


<210>  30
<211>  375
<212>  DNA
<213>  PRRS virus

<400>  30
atgccgaata ataacggtaa gcaacagaag aagaaaaagg gtaatggaca acccgttaac       60

caactttgcc agatgctggg taagataatt gcgcaacaaa accaatcaag ggggaagggg      120

ccagggaaga agaatagaaa gaaaaatccc gaaaaacccc attttccttt ggcaacggag      180

gacgatgtac gacatcattt cacccccagc gagaggcaac tttgtctgag tagcattcaa      240

accgccttta atcaaggcgc tgggacttgc gcccttagtg actctggtcg aatctcatac      300

accgtagaat ttagtctccc gacccagcat actgttcgac tgatccgagc caccgcctct      360

ccttctgctt gataa                                                       375


<210>  31
<211>  123
<212>  PRT
<213>  PRRS virus

<400>  31

Met Pro Asn Asn Asn Gly Lys Gln Gln Lys Lys Lys Lys Gly Asn Gly 
1               5                   10                  15      


Gln Pro Val Asn Gln Leu Cys Gln Met Leu Gly Lys Ile Ile Ala Gln 
            20                  25                  30          


Gln Asn Gln Ser Arg Gly Lys Gly Pro Gly Lys Lys Asn Arg Lys Lys 
        35                  40                  45              


Asn Pro Glu Lys Pro His Phe Pro Leu Ala Thr Glu Asp Asp Val Arg 
    50                  55                  60                  


His His Phe Thr Pro Ser Glu Arg Gln Leu Cys Leu Ser Ser Ile Gln 
65                  70                  75                  80  


Thr Ala Phe Asn Gln Gly Ala Gly Thr Cys Ala Leu Ser Asp Ser Gly 
                85                  90                  95      


Arg Ile Ser Tyr Thr Val Glu Phe Ser Leu Pro Thr Gln His Thr Val 
            100                 105                 110         


Arg Leu Ile Arg Ala Thr Ala Ser Pro Ser Ala 
        115                 120             


<210>  32
<211>  7561
<212>  DNA
<213>  VEE virus

<400>  32
ataggcggcg catgagagaa gcccagacca attacctacc caaaatggag aaagttcacg       60

ttgacatcga ggaagacagc ccattcctca gagctttgca gcggagcttc ccgcagtttg      120

aggtagaagc caagcaggtc actgataatg accatgctaa tgccagagcg ttttcgcatc      180

tggcttcaaa actgatcgaa acggaggtgg acccatccga cacgatcctt gacattggaa      240

gtgcgcccgc ccgcagaatg tattctaagc acaagtatca ttgtatctgt ccgatgagat      300

gtgcggaaga tccggacaga ttgtataagt atgcaactaa gctgaagaaa aactgtaagg      360

aaataactga taaggaattg gacaagaaaa tgaaggagct cgccgccgtc atgagcgacc      420

ctgacctgga aactgagact atgtgcctcc acgacgacga gtcgtgtcgc tacgaagggc      480

aagtcgctgt ttaccaggat gtatacgcgg ttgacggacc gacaagtctc tatcaccaag      540

ccaataaggg agttagagtc gcctactgga taggctttga caccacccct tttatgttta      600

agaacttggc tggagcatat ccatcatact ctaccaactg ggccgacgaa accgtgttaa      660

cggctcgtaa cataggccta tgcagctctg acgttatgga gcggtcacgt agagggatgt      720

ccattcttag aaagaagtat ttgaaaccat ccaacaatgt tctattctct gttggctcga      780

ccatctacca cgagaagagg gacttactga ggagctggca cctgccgtct gtatttcact      840

tacgtggcaa gcaaaattac acatgtcggt gtgagactat agttagttgc gacgggtacg      900

tcgttaaaag aatagctatc agtccaggcc tgtatgggaa gccttcaggc tatgctgcta      960

cgatgcaccg cgagggattc ttgtgctgca aagtgacaga cacattgaac ggggagaggg     1020

tctcttttcc cgtgtgcacg tatgtgccag ctacattgtg tgaccaaatg actggcatac     1080

tggcaacaga tgtcagtgcg gacgacgcgc aaaaactgct ggttgggctc aaccagcgta     1140

tagtcgtcaa cggtcgcacc cagagaaaca ccaataccat gaaaaattac cttttgcccg     1200

tagtggccca ggcatttgct aggtgggcaa aggaatataa ggaagatcaa gaagatgaaa     1260

ggccactagg actacgagat agacagttag tcatggggtg ttgttgggct tttagaaggc     1320

acaagataac atctatttat aagcgcccgg atacccaaac catcatcaaa gtgaacagcg     1380

atttccactc attcgtgctg cccaggatag gcagtaacac attggagatc gggctgagaa     1440

caagaatcag gaaaatgtta gaggagcaca aggagccgtc acctctcatt accgccgagg     1500

acgtacaaga agctaagtgc gcagccgatg aggctaagga ggtgcgtgaa gccgaggagt     1560

tgcgcgcagc tctaccacct ttggcagctg atgttgagga gcccactctg gaagccgatg     1620

tcgacttgat gttacaagag gctggggccg gctcagtgga gacacctcgt ggcttgataa     1680

aggttaccag ctacgatggc gaggacaaga tcggctctta cgctgtgctt tctccgcagg     1740

ctgtactcaa gagtgaaaaa ttatcttgca tccaccctct cgctgaacaa gtcatagtga     1800

taacacactc tggccgaaaa gggcgttatg ccgtggaacc ataccatggt aaagtagtgg     1860

tgccagaggg acatgcaata cccgtccagg actttcaagc tctgagtgaa agtgccacca     1920

ttgtgtacaa cgaacgtgag ttcgtaaaca ggtacctgca ccatattgcc acacatggag     1980

gagcgctgaa cactgatgaa gaatattaca aaactgtcaa gcccagcgag cacgacggcg     2040

aatacctgta cgacatcgac aggaaacagt gcgtcaagaa agaactagtc actgggctag     2100

ggctcacagg cgagctggtg gatcctccct tccatgaatt cgcctacgag agtctgagaa     2160

cacgaccagc cgctccttac caagtaccaa ccataggggt gtatggcgtg ccaggatcag     2220

gcaagtctgg catcattaaa agcgcagtca ccaaaaaaga tctagtggtg agcgccaaga     2280

aagaaaactg tgcagaaatt ataagggacg tcaagaaaat gaaagggctg gacgtcaatg     2340

ccagaactgt ggactcagtg ctcttgaatg gatgcaaaca ccccgtagag accctgtata     2400

ttgacgaagc ttttgcttgt catgcaggta ctctcagagc gctcatagcc attataagac     2460

ctaaaaaggc agtgctctgc ggggatccca aacagtgcgg tttttttaac atgatgtgcc     2520

tgaaagtgca ttttaaccac gagatttgca cacaagtctt ccacaaaagc atctctcgcc     2580

gttgcactaa atctgtgact tcggtcgtct caaccttgtt ttacgacaaa aaaatgagaa     2640

cgacgaatcc gaaagagact aagattgtga ttgacactac cggcagtacc aaacctaagc     2700

aggacgatct cattctcact tgtttcagag ggtgggtgaa gcagttgcaa atagattaca     2760

aaggcaacga aataatgacg gcagctgcct ctcaagggct gacccgtaaa ggtgtgtatg     2820

ccgttcggta caaggtgaat gaaaatcctc tgtacgcacc cacctcagaa catgtgaacg     2880

tcctactgac ccgcacggag gaccgcatcg tgtggaaaac actagccggc gacccatgga     2940

taaaaacact gactgccaag taccctggga atttcactgc cacgatagag gagtggcaag     3000

cagagcatga tgccatcatg aggcacatct tggagagacc ggaccctacc gacgtcttcc     3060

agaataaggc aaacgtgtgt tgggccaagg ctttagtgcc ggtgctgaag accgctggca     3120

tagacatgac cactgaacaa tggaacactg tggattattt tgaaacggac aaagctcact     3180

cagcagagat agtattgaac caactatgcg tgaggttctt tggactcgat ctggactccg     3240

gtctattttc tgcacccact gttccgttat ccattaggaa taatcactgg gataactccc     3300

cgtcgcctaa catgtacggg ctgaataaag aagtggtccg tcagctctct cgcaggtacc     3360

cacaactgcc tcgggcagtt gccactggaa gagtctatga catgaacact ggtacactgc     3420

gcaattatga tccgcgcata aacctagtac ctgtaaacag aagactgcct catgctttag     3480

tcctccacca taatgaacac ccacagagtg acttttcttc attcgtcagc aaattgaagg     3540

gcagaactgt cctggtggtc ggggaaaagt tgtccgtccc aggcaaaatg gttgactggt     3600

tgtcagaccg gcctgaggct accttcagag ctcggctgga tttaggcatc ccaggtgatg     3660

tgcccaaata tgacataata tttgttaatg tgaggacccc atataaatac catcactatc     3720

agcagtgtga agaccatgcc attaagctta gcatgttgac caagaaagct tgtctgcatc     3780

tgaatcccgg cggaacctgt gtcagcatag gttatggtta cgctgacagg gccagcgaaa     3840

gcatcattgg tgctatagcg cggcagttca agttttcccg ggtatgcaaa ccgaaatcct     3900

cacttgaaga gacggaagtt ctgtttgtat tcattcggta cgatcgcaag gcccgtacgc     3960

acaatcctta caagctttca tcaaccttga ccaacattta tacaggttcc agactccacg     4020

aagccggatg tgcaccctca tatcatgtgg tgcgagggga tattgccacg gccaccgaag     4080

gagtgattat aaatgctgct aacagcaaag gacaacctgg cggaggggtg tgcggagcgc     4140

tgtataagaa attcccggaa agcttcgatt tacagccgat cgaagtagga aaagcgcgac     4200

tggtcaaagg tgcagctaaa catatcattc atgccgtagg accaaacttc aacaaagttt     4260

cggaggttga aggtgacaaa cagttggcag aggcttatga gtccatcgct aagattgtca     4320

acgataacaa ttacaagtca gtagcgattc cactgttgtc caccggcatc ttttccggga     4380

acaaagatcg actaacccaa tcattgaacc atttgctgac agctttagac accactgatg     4440

cagatgtagc catatactgc agggacaaga aatgggaaat gactctcaag gaagcagtgg     4500

ctaggagaga agcagtggag gagatatgca tatccgacga ctcttcagtg acagaacctg     4560

atgcagagct ggtgagggtg catccgaaga gttctttggc tggaaggaag ggctacagca     4620

caagcgatgg caaaactttc tcatatttgg aagggaccaa gtttcaccag gcggccaagg     4680

atatagcaga aattaatgcc atgtggcccg ttgcaacgga ggccaatgag caggtatgca     4740

tgtatatcct cggagaaagc atgagcagta ttaggtcgaa atgccccgtc gaagagtcgg     4800

aagcctccac accacctagc acgctgcctt gcttgtgcat ccatgccatg actccagaaa     4860

gagtacagcg cctaaaagcc tcacgtccag aacaaattac tgtgtgctca tcctttccat     4920

tgccgaagta tagaatcact ggtgtgcaga agatccaatg ctcccagcct atattgttct     4980

caccgaaagt gcctgcgtat attcatccaa ggaagtatct cgtggaaaca ccaccggtag     5040

acgagactcc ggagccatcg gcagagaacc aatccacaga ggggacacct gaacaaccac     5100

cacttataac cgaggatgag accaggacta gaacgcctga gccgatcatc atcgaagagg     5160

aagaagagga tagcataagt ttgctgtcag atggcccgac ccaccaggtg ctgcaagtcg     5220

aggcagacat tcacgggccg ccctctgtat ctagctcatc ctggtccatt cctcatgcat     5280

ccgactttga tgtggacagt ttatccatac ttgacaccct ggagggagct agcgtgacca     5340

gcggggcaac gtcagccgag actaactctt acttcgcaaa gagtatggag tttctggcgc     5400

gaccggtgcc tgcgcctcga acagtattca ggaaccctcc acatcccgct ccgcgcacaa     5460

gaacaccgtc acttgcaccc agcagggcct gctcgagaac cagcctagtt tccaccccgc     5520

caggcgtgaa tagggtgatc actagagagg agctcgaggc gcttaccccg tcacgcactc     5580

ctagcaggtc ggtctcgaga accagcctgg tctccaaccc gccaggcgta aatagggtga     5640

ttacaagaga ggagtttgag gcgttcgtag cacaacaaca atgacggttt gatgcgggtg     5700

catacatctt ttcctccgac accggtcaag ggcatttaca acaaaaatca gtaaggcaaa     5760

cggtgctatc cgaagtggtg ttggagagga ccgaattgga gatttcgtat gccccgcgcc     5820

tcgaccaaga aaaagaagaa ttactacgca agaaattaca gttaaatccc acacctgcta     5880

acagaagcag ataccagtcc aggaaggtgg agaacatgaa agccataaca gctagacgta     5940

ttctgcaagg cctagggcat tatttgaagg cagaaggaaa agtggagtgc taccgaaccc     6000

tgcatcctgt tcctttgtat tcatctagtg tgaaccgtgc cttttcaagc cccaaggtcg     6060

cagtggaagc ctgtaacgcc atgttgaaag agaactttcc gactgtggct tcttactgta     6120

ttattccaga gtacgatgcc tatttggaca tggttgacgg agcttcatgc tgcttagaca     6180

ctgccagttt ttgccctgca aagctgcgca gctttccaaa gaaacactcc tatttggaac     6240

ccacaatacg atcggcagtg ccttcagcga tccagaacac gctccagaac gtcctggcag     6300

ctgccacaaa aagaaattgc aatgtcacgc aaatgagaga attgcccgta ttggattcgg     6360

cggcctttaa tgtggaatgc ttcaagaaat atgcgtgtaa taatgaatat tgggaaacgt     6420

ttaaagaaaa ccccatcagg cttactgaag aaaacgtggt aaattacatt accaaattaa     6480

aaggaccaaa agctgctgct ctttttgcga agacacataa tttgaatatg ttgcaggaca     6540

taccaatgga caggtttgta atggacttaa agagagacgt gaaagtgact ccaggaacaa     6600

aacatactga agaacggccc aaggtacagg tgatccaggc tgccgatccg ctagcaacag     6660

cgtatctgtg cggaatccac cgagagctgg ttaggagatt aaatgcggtc ctgcttccga     6720

acattcatac actgtttgat atgtcggctg aagactttga cgctattata gccgagcact     6780

tccagcctgg ggattgtgtt ctggaaactg acatcgcgtc gtttgataaa agtgaggacg     6840

acgccatggc tctgaccgcg ttaatgattc tggaagactt aggtgtggac gcagagctgt     6900

tgacgctgat tgaggcggct ttcggcgaaa tttcatcaat acatttgccc actaaaacta     6960

aatttaaatt cggagccatg atgaaatctg gaatgttcct cacactgttt gtgaacacag     7020

tcattaacat tgtaatcgca agcagagtgt tgagagaacg gctaaccgga tcaccatgtg     7080

cagcattcat tggagatgac aatatcgtga aaggagtcaa atcggacaaa ttaatggcag     7140

acaggtgcgc cacctggttg aatatggaag tcaagattat agatgctgtg gtgggcgaga     7200

aagcgcctta tttctgtgga gggtttattt tgtgtgactc cgtgaccggc acagcgtgcc     7260

gtgtggcaga ccccctaaaa aggctgttta agcttggcaa acctctggca gcagacgatg     7320

aacatgatga tgacaggaga agggcattgc atgaagagtc aacacgctgg aaccgagtgg     7380

gtattctttc agagctgtgc aaggcagtag aatcaaggta tgaaaccgta ggaacttcca     7440

tcatagttat ggccatgact actctagcta gcagtgttaa atcattcagc tacctgagag     7500

gggcccctat aactctctac ggctaacctg aatggactac gacatagtct agtccgccaa     7560

g                                                                     7561


<210>  33
<211>  7561
<212>  RNA
<213>  VEE virus

<400>  33
auaggcggcg caugagagaa gcccagacca auuaccuacc caaaauggag aaaguucacg       60

uugacaucga ggaagacagc ccauuccuca gagcuuugca gcggagcuuc ccgcaguuug      120

agguagaagc caagcagguc acugauaaug accaugcuaa ugccagagcg uuuucgcauc      180

uggcuucaaa acugaucgaa acggaggugg acccauccga cacgauccuu gacauuggaa      240

gugcgcccgc ccgcagaaug uauucuaagc acaaguauca uuguaucugu ccgaugagau      300

gugcggaaga uccggacaga uuguauaagu augcaacuaa gcugaagaaa aacuguaagg      360

aaauaacuga uaaggaauug gacaagaaaa ugaaggagcu cgccgccguc augagcgacc      420

cugaccugga aacugagacu augugccucc acgacgacga gucgugucgc uacgaagggc      480

aagucgcugu uuaccaggau guauacgcgg uugacggacc gacaagucuc uaucaccaag      540

ccaauaaggg aguuagaguc gccuacugga uaggcuuuga caccaccccu uuuauguuua      600

agaacuuggc uggagcauau ccaucauacu cuaccaacug ggccgacgaa accguguuaa      660

cggcucguaa cauaggccua ugcagcucug acguuaugga gcggucacgu agagggaugu      720

ccauucuuag aaagaaguau uugaaaccau ccaacaaugu ucuauucucu guuggcucga      780

ccaucuacca cgagaagagg gacuuacuga ggagcuggca ccugccgucu guauuucacu      840

uacguggcaa gcaaaauuac acaugucggu gugagacuau aguuaguugc gacggguacg      900

ucguuaaaag aauagcuauc aguccaggcc uguaugggaa gccuucaggc uaugcugcua      960

cgaugcaccg cgagggauuc uugugcugca aagugacaga cacauugaac ggggagaggg     1020

ucucuuuucc cgugugcacg uaugugccag cuacauugug ugaccaaaug acuggcauac     1080

uggcaacaga ugucagugcg gacgacgcgc aaaaacugcu gguugggcuc aaccagcgua     1140

uagucgucaa cggucgcacc cagagaaaca ccaauaccau gaaaaauuac cuuuugcccg     1200

uaguggccca ggcauuugcu aggugggcaa aggaauauaa ggaagaucaa gaagaugaaa     1260

ggccacuagg acuacgagau agacaguuag ucauggggug uuguugggcu uuuagaaggc     1320

acaagauaac aucuauuuau aagcgcccgg auacccaaac caucaucaaa gugaacagcg     1380

auuuccacuc auucgugcug cccaggauag gcaguaacac auuggagauc gggcugagaa     1440

caagaaucag gaaaauguua gaggagcaca aggagccguc accucucauu accgccgagg     1500

acguacaaga agcuaagugc gcagccgaug aggcuaagga ggugcgugaa gccgaggagu     1560

ugcgcgcagc ucuaccaccu uuggcagcug auguugagga gcccacucug gaagccgaug     1620

ucgacuugau guuacaagag gcuggggccg gcucagugga gacaccucgu ggcuugauaa     1680

agguuaccag cuacgauggc gaggacaaga ucggcucuua cgcugugcuu ucuccgcagg     1740

cuguacucaa gagugaaaaa uuaucuugca uccacccucu cgcugaacaa gucauaguga     1800

uaacacacuc uggccgaaaa gggcguuaug ccguggaacc auaccauggu aaaguagugg     1860

ugccagaggg acaugcaaua cccguccagg acuuucaagc ucugagugaa agugccacca     1920

uuguguacaa cgaacgugag uucguaaaca gguaccugca ccauauugcc acacauggag     1980

gagcgcugaa cacugaugaa gaauauuaca aaacugucaa gcccagcgag cacgacggcg     2040

aauaccugua cgacaucgac aggaaacagu gcgucaagaa agaacuaguc acugggcuag     2100

ggcucacagg cgagcuggug gauccucccu uccaugaauu cgccuacgag agucugagaa     2160

cacgaccagc cgcuccuuac caaguaccaa ccauaggggu guauggcgug ccaggaucag     2220

gcaagucugg caucauuaaa agcgcaguca ccaaaaaaga ucuaguggug agcgccaaga     2280

aagaaaacug ugcagaaauu auaagggacg ucaagaaaau gaaagggcug gacgucaaug     2340

ccagaacugu ggacucagug cucuugaaug gaugcaaaca ccccguagag acccuguaua     2400

uugacgaagc uuuugcuugu caugcaggua cucucagagc gcucauagcc auuauaagac     2460

cuaaaaaggc agugcucugc ggggauccca aacagugcgg uuuuuuuaac augaugugcc     2520

ugaaagugca uuuuaaccac gagauuugca cacaagucuu ccacaaaagc aucucucgcc     2580

guugcacuaa aucugugacu ucggucgucu caaccuuguu uuacgacaaa aaaaugagaa     2640

cgacgaaucc gaaagagacu aagauuguga uugacacuac cggcaguacc aaaccuaagc     2700

aggacgaucu cauucucacu uguuucagag ggugggugaa gcaguugcaa auagauuaca     2760

aaggcaacga aauaaugacg gcagcugccu cucaagggcu gacccguaaa gguguguaug     2820

ccguucggua caaggugaau gaaaauccuc uguacgcacc caccucagaa caugugaacg     2880

uccuacugac ccgcacggag gaccgcaucg uguggaaaac acuagccggc gacccaugga     2940

uaaaaacacu gacugccaag uacccuggga auuucacugc cacgauagag gaguggcaag     3000

cagagcauga ugccaucaug aggcacaucu uggagagacc ggacccuacc gacgucuucc     3060

agaauaaggc aaacgugugu ugggccaagg cuuuagugcc ggugcugaag accgcuggca     3120

uagacaugac cacugaacaa uggaacacug uggauuauuu ugaaacggac aaagcucacu     3180

cagcagagau aguauugaac caacuaugcg ugagguucuu uggacucgau cuggacuccg     3240

gucuauuuuc ugcacccacu guuccguuau ccauuaggaa uaaucacugg gauaacuccc     3300

cgucgccuaa cauguacggg cugaauaaag aagugguccg ucagcucucu cgcagguacc     3360

cacaacugcc ucgggcaguu gccacuggaa gagucuauga caugaacacu gguacacugc     3420

gcaauuauga uccgcgcaua aaccuaguac cuguaaacag aagacugccu caugcuuuag     3480

uccuccacca uaaugaacac ccacagagug acuuuucuuc auucgucagc aaauugaagg     3540

gcagaacugu ccuggugguc ggggaaaagu uguccguccc aggcaaaaug guugacuggu     3600

ugucagaccg gccugaggcu accuucagag cucggcugga uuuaggcauc ccaggugaug     3660

ugcccaaaua ugacauaaua uuuguuaaug ugaggacccc auauaaauac caucacuauc     3720

agcaguguga agaccaugcc auuaagcuua gcauguugac caagaaagcu ugucugcauc     3780

ugaaucccgg cggaaccugu gucagcauag guuaugguua cgcugacagg gccagcgaaa     3840

gcaucauugg ugcuauagcg cggcaguuca aguuuucccg gguaugcaaa ccgaaauccu     3900

cacuugaaga gacggaaguu cuguuuguau ucauucggua cgaucgcaag gcccguacgc     3960

acaauccuua caagcuuuca ucaaccuuga ccaacauuua uacagguucc agacuccacg     4020

aagccggaug ugcacccuca uaucaugugg ugcgagggga uauugccacg gccaccgaag     4080

gagugauuau aaaugcugcu aacagcaaag gacaaccugg cggaggggug ugcggagcgc     4140

uguauaagaa auucccggaa agcuucgauu uacagccgau cgaaguagga aaagcgcgac     4200

uggucaaagg ugcagcuaaa cauaucauuc augccguagg accaaacuuc aacaaaguuu     4260

cggagguuga aggugacaaa caguuggcag aggcuuauga guccaucgcu aagauuguca     4320

acgauaacaa uuacaaguca guagcgauuc cacuguuguc caccggcauc uuuuccggga     4380

acaaagaucg acuaacccaa ucauugaacc auuugcugac agcuuuagac accacugaug     4440

cagauguagc cauauacugc agggacaaga aaugggaaau gacucucaag gaagcagugg     4500

cuaggagaga agcaguggag gagauaugca uauccgacga cucuucagug acagaaccug     4560

augcagagcu ggugagggug cauccgaaga guucuuuggc uggaaggaag ggcuacagca     4620

caagcgaugg caaaacuuuc ucauauuugg aagggaccaa guuucaccag gcggccaagg     4680

auauagcaga aauuaaugcc auguggcccg uugcaacgga ggccaaugag cagguaugca     4740

uguauauccu cggagaaagc augagcagua uuaggucgaa augccccguc gaagagucgg     4800

aagccuccac accaccuagc acgcugccuu gcuugugcau ccaugccaug acuccagaaa     4860

gaguacagcg ccuaaaagcc ucacguccag aacaaauuac ugugugcuca uccuuuccau     4920

ugccgaagua uagaaucacu ggugugcaga agauccaaug cucccagccu auauuguucu     4980

caccgaaagu gccugcguau auucauccaa ggaaguaucu cguggaaaca ccaccgguag     5040

acgagacucc ggagccaucg gcagagaacc aauccacaga ggggacaccu gaacaaccac     5100

cacuuauaac cgaggaugag accaggacua gaacgccuga gccgaucauc aucgaagagg     5160

aagaagagga uagcauaagu uugcugucag auggcccgac ccaccaggug cugcaagucg     5220

aggcagacau ucacgggccg cccucuguau cuagcucauc cugguccauu ccucaugcau     5280

ccgacuuuga uguggacagu uuauccauac uugacacccu ggagggagcu agcgugacca     5340

gcggggcaac gucagccgag acuaacucuu acuucgcaaa gaguauggag uuucuggcgc     5400

gaccggugcc ugcgccucga acaguauuca ggaacccucc acaucccgcu ccgcgcacaa     5460

gaacaccguc acuugcaccc agcagggccu gcucgagaac cagccuaguu uccaccccgc     5520

caggcgugaa uagggugauc acuagagagg agcucgaggc gcuuaccccg ucacgcacuc     5580

cuagcagguc ggucucgaga accagccugg ucuccaaccc gccaggcgua aauaggguga     5640

uuacaagaga ggaguuugag gcguucguag cacaacaaca augacgguuu gaugcgggug     5700

cauacaucuu uuccuccgac accggucaag ggcauuuaca acaaaaauca guaaggcaaa     5760

cggugcuauc cgaaguggug uuggagagga ccgaauugga gauuucguau gccccgcgcc     5820

ucgaccaaga aaaagaagaa uuacuacgca agaaauuaca guuaaauccc acaccugcua     5880

acagaagcag auaccagucc aggaaggugg agaacaugaa agccauaaca gcuagacgua     5940

uucugcaagg ccuagggcau uauuugaagg cagaaggaaa aguggagugc uaccgaaccc     6000

ugcauccugu uccuuuguau ucaucuagug ugaaccgugc cuuuucaagc cccaaggucg     6060

caguggaagc cuguaacgcc auguugaaag agaacuuucc gacuguggcu ucuuacugua     6120

uuauuccaga guacgaugcc uauuuggaca ugguugacgg agcuucaugc ugcuuagaca     6180

cugccaguuu uugcccugca aagcugcgca gcuuuccaaa gaaacacucc uauuuggaac     6240

ccacaauacg aucggcagug ccuucagcga uccagaacac gcuccagaac guccuggcag     6300

cugccacaaa aagaaauugc aaugucacgc aaaugagaga auugcccgua uuggauucgg     6360

cggccuuuaa uguggaaugc uucaagaaau augcguguaa uaaugaauau ugggaaacgu     6420

uuaaagaaaa ccccaucagg cuuacugaag aaaacguggu aaauuacauu accaaauuaa     6480

aaggaccaaa agcugcugcu cuuuuugcga agacacauaa uuugaauaug uugcaggaca     6540

uaccaaugga cagguuugua auggacuuaa agagagacgu gaaagugacu ccaggaacaa     6600

aacauacuga agaacggccc aagguacagg ugauccaggc ugccgauccg cuagcaacag     6660

cguaucugug cggaauccac cgagagcugg uuaggagauu aaaugcgguc cugcuuccga     6720

acauucauac acuguuugau augucggcug aagacuuuga cgcuauuaua gccgagcacu     6780

uccagccugg ggauuguguu cuggaaacug acaucgcguc guuugauaaa agugaggacg     6840

acgccauggc ucugaccgcg uuaaugauuc uggaagacuu agguguggac gcagagcugu     6900

ugacgcugau ugaggcggcu uucggcgaaa uuucaucaau acauuugccc acuaaaacua     6960

aauuuaaauu cggagccaug augaaaucug gaauguuccu cacacuguuu gugaacacag     7020

ucauuaacau uguaaucgca agcagagugu ugagagaacg gcuaaccgga ucaccaugug     7080

cagcauucau uggagaugac aauaucguga aaggagucaa aucggacaaa uuaauggcag     7140

acaggugcgc caccugguug aauauggaag ucaagauuau agaugcugug gugggcgaga     7200

aagcgccuua uuucugugga ggguuuauuu ugugugacuc cgugaccggc acagcgugcc     7260

guguggcaga cccccuaaaa aggcuguuua agcuuggcaa accucuggca gcagacgaug     7320

aacaugauga ugacaggaga agggcauugc augaagaguc aacacgcugg aaccgagugg     7380

guauucuuuc agagcugugc aaggcaguag aaucaaggua ugaaaccgua ggaacuucca     7440

ucauaguuau ggccaugacu acucuagcua gcaguguuaa aucauucagc uaccugagag     7500

gggccccuau aacucucuac ggcuaaccug aauggacuac gacauagucu aguccgccaa     7560

g                                                                     7561


<210>  34
<211>  1653
<212>  DNA
<213>  Firefly

<400>  34
atggaagatg ccaaaaacat taagaagggc ccagcgccat tctacccact cgaagacggg       60

accgccggcg agcagctgca caaagccatg aagcgctacg ccctggtgcc cggcaccatc      120

gcctttaccg acgcacatat cgaggtggac attacctacg ccgagtactt cgagatgagc      180

gttcggctgg cagaagctat gaagcgctat gggctgaata caaaccatcg gatcgtggtg      240

tgcagcgaga atagcttgca gttcttcatg cccgtgttgg gtgccctgtt catcggtgtg      300

gctgtggccc cagctaacga catctacaac gagcgcgagc tgctgaacag catgggcatc      360

agccagccca ccgtcgtatt cgtgagcaag aaagggctgc aaaagatcct caacgtgcaa      420

aagaagctac cgatcataca aaagatcatc atcatggata gcaagaccga ctaccagggc      480

ttccaaagca tgtacacctt cgtgacttcc catttgccac ccggcttcaa cgagtacgac      540

ttcgtgcccg agagcttcga ccgggacaaa accatcgccc tgatcatgaa cagtagtggc      600

agtaccggat tgcccaaggg cgtagcccta ccgcaccgca ccgcttgtgt ccgattcagt      660

catgcccgcg accccatctt cggcaaccag atcatccccg acaccgctat cctcagcgtg      720

gtgccatttc accacggctt cggcatgttc accacgctgg gctacttgat ctgcggcttt      780

cgggtcgtgc tcatgtaccg cttcgaggag gagctattct tgcgcagctt gcaagactat      840

aagattcaat ctgccctgct ggtgcccaca ctatttagct tcttcgctaa gagcactctc      900

atcgacaagt acgacctaag caacttgcac gagatcgcca gcggcggggc gccgctcagc      960

aaggaggtag gtgaggccgt ggccaaacgc ttccacctac caggcatccg ccagggctac     1020

ggcctgacag aaacaaccag cgccattctg atcacccccg aaggggacga caagcctggc     1080

gcagtaggca aggtggtgcc cttcttcgag gctaaggtgg tggacttgga caccggtaag     1140

acactgggtg tgaaccagcg cggcgagctg tgcgtccgtg gccccatgat catgagcggc     1200

tacgttaaca accccgaggc tacaaacgct ctcatcgaca aggacggctg gctgcacagc     1260

ggcgacatcg cctactggga cgaggacgag cacttcttca tcgtggaccg gctgaaaagc     1320

ctgatcaaat acaagggcta ccaggtagcc ccagccgaac tggagagcat cctgctgcaa     1380

caccccaaca tcttcgacgc cggggtcgcc ggcctgcccg acgacgatgc cggcgagctg     1440

cccgccgcag tcgtcgtgct ggaacacggt aaaaccatga ccgagaagga gatcgtggac     1500

tatgtggcca gccaggttac aaccgccaag aagctgcgcg gtggtgttgt gttcgtggac     1560

gaggtgccta aaggactgac cggcaagttg gacgcccgca agatccgcga gattctcatt     1620

aaggccaaga agggcggcaa gatcgccgtg taa                                  1653


<210>  35
<211>  1653
<212>  RNA
<213>  Firefly

<400>  35
auggaagaug ccaaaaacau uaagaagggc ccagcgccau ucuacccacu cgaagacggg       60

accgccggcg agcagcugca caaagccaug aagcgcuacg cccuggugcc cggcaccauc      120

gccuuuaccg acgcacauau cgagguggac auuaccuacg ccgaguacuu cgagaugagc      180

guucggcugg cagaagcuau gaagcgcuau gggcugaaua caaaccaucg gaucguggug      240

ugcagcgaga auagcuugca guucuucaug cccguguugg gugcccuguu caucggugug      300

gcuguggccc cagcuaacga caucuacaac gagcgcgagc ugcugaacag caugggcauc      360

agccagccca ccgucguauu cgugagcaag aaagggcugc aaaagauccu caacgugcaa      420

aagaagcuac cgaucauaca aaagaucauc aucauggaua gcaagaccga cuaccagggc      480

uuccaaagca uguacaccuu cgugacuucc cauuugccac ccggcuucaa cgaguacgac      540

uucgugcccg agagcuucga ccgggacaaa accaucgccc ugaucaugaa caguaguggc      600

aguaccggau ugcccaaggg cguagcccua ccgcaccgca ccgcuugugu ccgauucagu      660

caugcccgcg accccaucuu cggcaaccag aucauccccg acaccgcuau ccucagcgug      720

gugccauuuc accacggcuu cggcauguuc accacgcugg gcuacuugau cugcggcuuu      780

cgggucgugc ucauguaccg cuucgaggag gagcuauucu ugcgcagcuu gcaagacuau      840

aagauucaau cugcccugcu ggugcccaca cuauuuagcu ucuucgcuaa gagcacucuc      900

aucgacaagu acgaccuaag caacuugcac gagaucgcca gcggcggggc gccgcucagc      960

aaggagguag gugaggccgu ggccaaacgc uuccaccuac caggcauccg ccagggcuac     1020

ggccugacag aaacaaccag cgccauucug aucacccccg aaggggacga caagccuggc     1080

gcaguaggca agguggugcc cuucuucgag gcuaaggugg uggacuugga caccgguaag     1140

acacugggug ugaaccagcg cggcgagcug ugcguccgug gccccaugau caugagcggc     1200

uacguuaaca accccgaggc uacaaacgcu cucaucgaca aggacggcug gcugcacagc     1260

ggcgacaucg ccuacuggga cgaggacgag cacuucuuca ucguggaccg gcugaaaagc     1320

cugaucaaau acaagggcua ccagguagcc ccagccgaac uggagagcau ccugcugcaa     1380

caccccaaca ucuucgacgc cggggucgcc ggccugcccg acgacgaugc cggcgagcug     1440

cccgccgcag ucgucgugcu ggaacacggu aaaaccauga ccgagaagga gaucguggac     1500

uauguggcca gccagguuac aaccgccaag aagcugcgcg gugguguugu guucguggac     1560

gaggugccua aaggacugac cggcaaguug gacgcccgca agauccgcga gauucucauu     1620

aaggccaaga agggcggcaa gaucgccgug uaa                                  1653


<210>  36
<211>  1698
<212>  DNA
<213>  Respiratory syncytial virus

<400>  36
atggaactgc tgatcctgaa ggccaacgcc atcaccacca tcctgaccgc cgtgaccttc       60

tgcttcgcca gcggccagaa catcaccgag gaattctacc agagcacctg cagcgccgtg      120

agcaagggct acctgagcgc cctgcggacc ggctggtaca ccagcgtgat caccatcgag      180

ctgtccaaca tcaaagaaaa caagtgcaac ggcaccgacg ccaaggtgaa actgatcaag      240

caggaactgg acaagtacaa gaacgccgtg accgagctgc agctgctgat gcagagcacc      300

cccgccacca acaaccgggc cagaagagag ctgccccggt tcatgaacta caccctgaac      360

aacgccaaga aaaccaacgt gaccctgagc aagaagcgga agcggcggag cgccatcgcc      420

agcggggtgg ccgtgtccaa ggtgctgcac ctggaaggcg aggtgaacaa gatcaagtcc      480

gccctgctgt ccaccaacaa ggccgtggtg tccctgagca acggcgtgag cgtgctgacc      540

agcaaggtgc tggatctgaa gaactacatc gacaagcagc tgctgcccat cgtgaacaag      600

cagagctgca gcatcagcaa catcgagacc gtgatcgagt tccagcagaa gaacaaccgg      660

ctgctggaaa tcacccggga gttcagcgtg aacgccggcg tgaccacccc cgtgagcacc      720

tacatgctga ccaacagcga gctgctgtcc ctgatcaatg acatgcccat caccaacgac      780

cagaaaaagc tgatgagcaa caacgtgcag atcgtgcggc agcagagcta ctccatcatg      840

agcatcatca aagaagaggt gctggcctac gtggtgcagc tgcccctgta cggcgtgatc      900

gacaccccct gctggaagct gcacaccagc cccctgtgca ccaccaacac caaagagggc      960

agcaacatct gcctgacccg gaccgaccgg ggctggtact gcgacaacgc cggcagcgtg     1020

agcttcttcc cccaagccga gacctgcaag gtgcagagca accgggtgtt ctgcgacacc     1080

atgaacagcc tgaccctgcc ctccgaggtg aacctgtgca acgtggacat cttcaacccc     1140

aagtacgact gcaagatcat gacctccaag accgacgtga gcagctccgt gatcacctcc     1200

ctgggcgcca tcgtgagctg ctacggcaag accaagtgca ccgccagcaa caagaaccgg     1260

ggcatcatca agaccttcag caacggctgc gactacgtga gcaacaaggg cgtggacacc     1320

gtgagcgtgg gcaacacact gtactacgtg aataagcagg aaggcaagag cctgtacgtg     1380

aagggcgagc ccatcatcaa cttctacgac cccctggtgt tccccagcga cgagttcgac     1440

gccagcatca gccaggtcaa cgagaagatc aaccagagcc tggccttcat ccggaagtcc     1500

gacgagctgc tgcacaatgt gaatgccggc aagagcacca ccaatatcat gatcaccaca     1560

atcatcatcg tgatcattgt gatcctgctg tctctgattg ccgtgggcct gctgctgtac     1620

tgcaaggccc gcagcacccc tgtgaccctg tccaaggacc agctgtccgg catcaacaat     1680

atcgccttct ccaactga                                                   1698


<210>  37
<211>  1698
<212>  RNA
<213>  RSV

<400>  37
auggaacugc ugauccugaa ggccaacgcc aucaccacca uccugaccgc cgugaccuuc       60

ugcuucgcca gcggccagaa caucaccgag gaauucuacc agagcaccug cagcgccgug      120

agcaagggcu accugagcgc ccugcggacc ggcugguaca ccagcgugau caccaucgag      180

cuguccaaca ucaaagaaaa caagugcaac ggcaccgacg ccaaggugaa acugaucaag      240

caggaacugg acaaguacaa gaacgccgug accgagcugc agcugcugau gcagagcacc      300

cccgccacca acaaccgggc cagaagagag cugccccggu ucaugaacua cacccugaac      360

aacgccaaga aaaccaacgu gacccugagc aagaagcgga agcggcggag cgccaucgcc      420

agcggggugg ccguguccaa ggugcugcac cuggaaggcg aggugaacaa gaucaagucc      480

gcccugcugu ccaccaacaa ggccguggug ucccugagca acggcgugag cgugcugacc      540

agcaaggugc uggaucugaa gaacuacauc gacaagcagc ugcugcccau cgugaacaag      600

cagagcugca gcaucagcaa caucgagacc gugaucgagu uccagcagaa gaacaaccgg      660

cugcuggaaa ucacccggga guucagcgug aacgccggcg ugaccacccc cgugagcacc      720

uacaugcuga ccaacagcga gcugcugucc cugaucaaug acaugcccau caccaacgac      780

cagaaaaagc ugaugagcaa caacgugcag aucgugcggc agcagagcua cuccaucaug      840

agcaucauca aagaagaggu gcuggccuac guggugcagc ugccccugua cggcgugauc      900

gacacccccu gcuggaagcu gcacaccagc ccccugugca ccaccaacac caaagagggc      960

agcaacaucu gccugacccg gaccgaccgg ggcugguacu gcgacaacgc cggcagcgug     1020

agcuucuucc cccaagccga gaccugcaag gugcagagca accggguguu cugcgacacc     1080

augaacagcc ugacccugcc cuccgaggug aaccugugca acguggacau cuucaacccc     1140

aaguacgacu gcaagaucau gaccuccaag accgacguga gcagcuccgu gaucaccucc     1200

cugggcgcca ucgugagcug cuacggcaag accaagugca ccgccagcaa caagaaccgg     1260

ggcaucauca agaccuucag caacggcugc gacuacguga gcaacaaggg cguggacacc     1320

gugagcgugg gcaacacacu guacuacgug aauaagcagg aaggcaagag ccuguacgug     1380

aagggcgagc ccaucaucaa cuucuacgac ccccuggugu uccccagcga cgaguucgac     1440

gccagcauca gccaggucaa cgagaagauc aaccagagcc uggccuucau ccggaagucc     1500

gacgagcugc ugcacaaugu gaaugccggc aagagcacca ccaauaucau gaucaccaca     1560

aucaucaucg ugaucauugu gauccugcug ucucugauug ccgugggccu gcugcuguac     1620

ugcaaggccc gcagcacccc ugugacccug uccaaggacc agcuguccgg caucaacaau     1680

aucgccuucu ccaacuga                                                   1698


<210>  38
<211>  747
<212>  DNA
<213>  Human enterovirus

<400>  38
ttaaaacagc tgtgggttgt tcccacccac agggcccact gggcgctagc actctgattt       60

tacgaaatcc ttgtgcgcct gttttatatc ccttccctaa ttcgaaacgt agaagcaatg      120

cgcaccactg atcaatagta ggcgtaacgc gccagttacg tcatgatcaa gcatatctgt      180

tcccccggac tgagtatcaa tagactgctt acgcggttga aggagaaaac gttcgttatc      240

cggctaacta cttcgagaag cccagtaaca ccatggaagc tgcagggtgt ttcgctcagc      300

acttcccccg tgtagatcag gtcgatgagc cactgcaatc cccacaggtg actgtggcag      360

tggctgcgtt ggcggcctgc ctatggggag acccatagga cgctctaatg tggacatggt      420

gcgaagagtc tattgagcta gttagtagtc ctccggcccc tgaatgcggc taatcctaac      480

tgcggagcac atgccttcaa cccagagggt agtgtgtcgt aacgggcaac tctgcagcgg      540

aaccgactac tttgggtgtc cgtgtttctt ttttattctt atattggctg cttatggtga      600

caattacaga attgttacca tatagctatt ggattggcca tccggtgtgt aatagagctg      660

ttatatacct atttgttggc tttgtaccac taactttaaa atctataact accctcaact      720

ttatattaac cctcaataca gttgacc                                          747


<210>  39
<211>  747
<212>  RNA
<213>  Human enterovirus

<400>  39
uuaaaacagc uguggguugu ucccacccac agggcccacu gggcgcuagc acucugauuu       60

uacgaaaucc uugugcgccu guuuuauauc ccuucccuaa uucgaaacgu agaagcaaug      120

cgcaccacug aucaauagua ggcguaacgc gccaguuacg ucaugaucaa gcauaucugu      180

ucccccggac ugaguaucaa uagacugcuu acgcgguuga aggagaaaac guucguuauc      240

cggcuaacua cuucgagaag cccaguaaca ccauggaagc ugcagggugu uucgcucagc      300

acuucccccg uguagaucag gucgaugagc cacugcaauc cccacaggug acuguggcag      360

uggcugcguu ggcggccugc cuauggggag acccauagga cgcucuaaug uggacauggu      420

gcgaagaguc uauugagcua guuaguaguc cuccggcccc ugaaugcggc uaauccuaac      480

ugcggagcac augccuucaa cccagagggu agugugucgu aacgggcaac ucugcagcgg      540

aaccgacuac uuuggguguc cguguuucuu uuuuauucuu auauuggcug cuuaugguga      600

caauuacaga auuguuacca uauagcuauu ggauuggcca uccggugugu aauagagcug      660

uuauauaccu auuuguuggc uuuguaccac uaacuuuaaa aucuauaacu acccucaacu      720

uuauauuaac ccucaauaca guugacc                                          747


