                         SEQUENCE LISTING

<110>  Vilnius University
       ThermoPharma Baltic, UAB
 
<120>  CLEAR CELL RENAL CELL CARCINOMA BIOMARKERS AND USES THEREFOR

<130>  V83-79

<160>  78    

<170>  PatentIn version 3.5

<210>  1
<211>  156
<212>  DNA
<213>  Homo sapiens

<400>  1
tcgcgggtta taggttttta cgtttcgttg tcgggttttg gggtcgtttt gtaggttaaa       60

atttcgaatt tgtttatttt tttcgcggcg tggttttaag acgtttttag tttcgtcgtt      120

tcgagagggt ttagagattt gcgtttattt cggatt                                156


<210>  2
<211>  182
<212>  DNA
<213>  Homo sapiens

<400>  2
tttaatattc gttttcggag cgtacgggaa ttcgtcgagt tttgcgtgta ggtttttttt       60

ttttttgagg tttatatttt ttgaaatttt acgttagggt ttttgtaatt ttttttttcg      120

ttcgttgacg gttttggagt cgttcggggt tttaggtcgg ttatgtaacg tgtatcgttc      180

gg                                                                     182


<210>  3
<211>  146
<212>  DNA
<213>  Homo sapiens

<400>  3
tttagagttc gttggaggtt cggagttgtt attcgtagat ttttttcgta tagggttcgt       60

aaagagcgtg atttcgagag tttgagattg acgttcgatt tggaaattag agaagatttt      120

tttagttttt cggatcgtat ttgagg                                           146


<210>  4
<211>  90
<212>  DNA
<213>  Homo sapiens

<400>  4
ttcgaagatt ttaagagtgg gcgatttata ggcgcggtcg gtaagttttt gggggattcg       60

ggttcggacg agcgtttata ggtagcgttt                                        90


<210>  5
<211>  139
<212>  DNA
<213>  Homo sapiens

<400>  5
ggtattgagt aggcgaaaga gcgcgttcgg attttttttt cggcggtagt tatcgagagt       60

gcggagcgat tagcgtgcgt tcggaggaat tagagaaatt tagtatttcg cgggattgtt      120

cgtcgtagta agtgttcgc                                                   139


<210>  6
<211>  277
<212>  DNA
<213>  Homo sapiens

<400>  6
tagtatttgg agcgagtttt gcgttcgttt tcgcgtagcg tcgtacgttc ggtttcgagt       60

tgttcgtata tacgcgtcgg aggagagttc gtttagtttt ttcgtcgagt ttcgggattt      120

tttaaattcg aggagtttcg gcgtcgcggg gtagtttttt gtcgtttttt tcgttcgttg      180

tatttttttt ggggttcgtt ggtttggcga agcggagagg gggaggcgga ggaggagaga      240

aggcgggggt cgcggcggtc gaagttaaga gaaagtg                               277


<210>  7
<211>  156
<212>  DNA
<213>  Homo sapiens

<400>  7
tcgcgtttgg ttttagtaaa tcgaattcgt tcgcgaggga ggcgattggt tttcgcgtcg       60

gtgacggacg tggtaacgag tgcggttcgt ttcgtcggga gttgattggt tgcgcggggc      120

ggtttcgagg gttcggtcgt aggagtttcg cgtatt                                156


<210>  8
<211>  157
<212>  DNA
<213>  Homo sapiens

<400>  8
aaagggtttg ggtaaattcg tcgttcggtt ttttagcgtt tcggggaggt cgttgcgttt       60

cggagtggat cgcgttggag gcgtgcgtcg ggcgagaagt cgcggtcgcg ggagcgtagt      120

atggggaaga atcgcgagat gcgtttgatt tatattt                               157


<210>  9
<211>  161
<212>  DNA
<213>  Homo sapiens

<400>  9
gttttttaag ttttgcggtg cgttcgggcg agtgcggggc gaggggttcg gggttagtat       60

cgagtagggg gcgggggttc gggtagagcg cggtcggtcg gggaggggtt atgtttggcg      120

cgggcgtagc ggggttcgtt tgtagtaagt gatcgagcgg c                          161


<210>  10
<211>  130
<212>  DNA
<213>  Homo sapiens

<400>  10
gtgaagtaga agacgtttcg cgttcgttta gtagtttcgt agtttcgcgg tggtgtggga       60

gaggtcgcgg cgttttttat tttcggggga gtttgcgagg ggttgtcgcg agcgcgttat      120

ttgttaattt                                                             130


<210>  11
<211>  96
<212>  DNA
<213>  Homo sapiens

<400>  11
ggcgttttcg ggtgagtttt cgtttttcgg gtttaagttt gcgtttcgcg ggttataggt       60

ttttacgttt cgttgtcggg ttttggggtc gttttg                                 96


<210>  12
<211>  102
<212>  DNA
<213>  Homo sapiens

<400>  12
tgacggtttt ggagtcgttc ggggttttag gtcggttatg taacgtgtat cgttcggggt       60

tgtcggttgt attttcgtcg cgtttcgtcg tttattgcgt ta                         102


<210>  13
<211>  91
<212>  DNA
<213>  Homo sapiens

<400>  13
tagagtgagg gcgggttcgc gcgtttttag agttcgttgg aggttcggag ttgttattcg       60

tagatttttt tcgtataggg ttcgtaaaga g                                      91


<210>  14
<211>  118
<212>  DNA
<213>  Homo sapiens

<400>  14
cgggatagtt tttgaaagtt cggcgtagag tcgtttcgaa gattttaaga gtgggcgatt       60

tataggcgcg gtcggtaagt ttttggggga ttcgggttcg gacgagcgtt tataggta        118


<210>  15
<211>  107
<212>  DNA
<213>  Homo sapiens

<400>  15
gagcgattag cgtgcgttcg gaggaattag agaaatttag tatttcgcgg gattgttcgt       60

cgtagtaagt gttcgcgcgg tgttggtcgc ggttgttcgg gttattt                    107


<210>  16
<211>  92
<212>  DNA
<213>  Homo sapiens

<400>  16
agtttttaga tttacgtcgg gcgggcgtag tatttggagc gagttttgcg ttcgttttcg       60

cgtagcgtcg tacgttcggt ttcgagttgt tc                                     92


<210>  17
<211>  133
<212>  DNA
<213>  Homo sapiens

<400>  17
aaccaataaa acctactcct cccttaaaaa ttacaaaaac cacaacctaa taaaaaaaat       60

aaccaccacc caacacacaa taacaaacac aaattcacaa tccaaaaaac ttactaaacc      120

tcctccatca cca                                                         133


<210>  18
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ZNF677 M forward primer

<400>  18
tcgcgggtta taggttttta c                                                 21


<210>  19
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ZNF677 M reverse primer

<400>  19
aatccgaaat aaacgcaaat ctc                                               23


<210>  20
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ZNF677 U forward primer

<400>  20
gttttgtggg ttataggttt ttatg                                             25


<210>  21
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ZNF677 U reverse primer

<400>  21
tttaatccaa aataaacaca aatctct                                           27


<210>  22
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FBN2 M forward primer

<400>  22
tttaatattc gttttcggag cg                                                22


<210>  23
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FBN2 M reverse primer

<400>  23
ccgaacgata cacgttacat aa                                                22


<210>  24
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FBN2 U forward primer

<400>  24
gtagtttttt aatatttgtt tttggagtg                                         29


<210>  25
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FBN2 U reverse primer

<400>  25
accccaaaca atacacatta cataa                                             25


<210>  26
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCDH8 M forward primer

<400>  26
tttagagttc gttggaggtt c                                                 21


<210>  27
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCDH8 M reverse primer

<400>  27
cctcaaatac gatccgaaaa ac                                                22


<210>  28
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCDH8 U forward primer

<400>  28
gtttttagag tttgttggag gttt                                              24


<210>  29
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCDH8 U reverse primer

<400>  29
caacctcaaa tacaatccaa aaaac                                             25


<210>  30
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFAP2B M forward primer

<400>  30
ttcgaagatt ttaagagtgg gc                                                22


<210>  31
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFAP2B M reverse primer

<400>  31
aaacgctacc tataaacgct cg                                                22


<210>  32
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFAP2B U forward primer

<400>  32
gttttgaaga ttttaagagt gggt                                              24


<210>  33
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFAP2B U reverse primer

<400>  33
ccaaacacta cctataaaca ctca                                              24


<210>  34
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAC1 M forward primer

<400>  34
ggtattgagt aggcgaaaga gc                                                22


<210>  35
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAC1 M reverse primer

<400>  35
gcgaacactt actacgacga ac                                                22


<210>  36
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAC1 U forward primer

<400>  36
taaggtattg agtaggtgaa agagt                                             25


<210>  37
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAC1 U reverse primer

<400>  37
cacaaacact tactacaaca aacaat                                            26


<210>  38
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FLRT2 M forward primer

<400>  38
tagtatttgg agcgagtttt gc                                                22


<210>  39
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FLRT2 M reverse primer

<400>  39
cactttctct taacttcgac cg                                                22


<210>  40
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FLRT U forward primer

<400>  40
gtagtatttg gagtgagttt tgtgt                                             25


<210>  41
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FLRT2 U reverse primer

<400>  41
ccactttctc ttaacttcaa cca                                               23


<210>  42
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SFRP1 M forward primer

<400>  42
tcgcgtttgg ttttagtaaa tc                                                22


<210>  43
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SFRP1 M reverse primer

<400>  43
aatacgcgaa actcctacga c                                                 21


<210>  44
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SFRP1 U forward primer

<400>  44
gagttgtgtt tggttttagt aaatt                                             25


<210>  45
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SFRP1 U reverse primer

<400>  45
aaaatacaca aaactcctac aacc                                              24


<210>  46
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ADAMTS19 M forward primer

<400>  46
aaagggtttg ggtaaattcg tc                                                22


<210>  47
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ADAMTS19 M reverse primer

<400>  47
aaatataaat caaacgcatc tcgc                                              24


<210>  48
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ADAMTS19 U forward primer

<400>  48
taaagggttt gggtaaattt gttg                                              24


<210>  49
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ADAMTS19 U reverse primer

<400>  49
acaaatataa atcaaacaca tctcac                                            26


<210>  50
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BMP7 M forward primer

<400>  50
gttttttaag ttttgcggtg cg                                                22


<210>  51
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BMP7 M reverse primer

<400>  51
gccgctcgat cacttactac                                                   20


<210>  52
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BMP7 U forward primer

<400>  52
gttgtttttt aagttttgtg gtgt                                              24


<210>  53
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BMP7 U reverse primer

<400>  53
caccactcaa tcacttacta ca                                                22


<210>  54
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SIM1 M forward primer

<400>  54
gtgaagtaga agacgtttcg c                                                 21


<210>  55
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SIM1 M reverse primer

<400>  55
aaattaacaa ataacgcgct cg                                                22


<210>  56
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SIM1 U forward primer

<400>  56
taggtgaagt agaagatgtt ttgt                                              24


<210>  57
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  SIM1 U reverse primer

<400>  57
ccaaattaac aaataacaca ctcac                                             25


<210>  58
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ZNF677 forward primer

<400>  58
ggcgttttcg ggtgagtttt c                                                 21


<210>  59
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ZNF677 reverse primer

<400>  59
caaaacgacc ccaaaacccg                                                   20


<210>  60
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ZNF677 probe


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  fluorescein

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  black hole quencher-1/3

<400>  60
ngaaacgtaa aaacctataa cccgcgaaac gn                                     32


<210>  61
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FBN2 forward primer

<400>  61
tgacggtttt ggagtcgttc                                                   20


<210>  62
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FBN2 reverse primer

<400>  62
taacgcaata aacgacgaaa cg                                                22


<210>  63
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FBN2 probe


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  fluorescein

<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  black hole quencher-1/3

<400>  63
ncgacaaccc cgaacgatac acgttacan                                         29


<210>  64
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCDH8 forward primer

<400>  64
tagagtgagg gcgggttc                                                     18


<210>  65
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCDH8 reverse primer

<400>  65
ctctttacga accctatacg aa                                                22


<210>  66
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCDH8 probe


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  fluorescein

<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  black hole quencher-1/3

<400>  66
ncgaacctcc aacgaactct aaaaacgcgn                                        30


<210>  67
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFAP2B forward primer

<400>  67
cgggatagtt tttgaaagtt cg                                                22


<210>  68
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFAP2B reverse primer

<400>  68
tacctataaa cgctcgtccg                                                   20


<210>  69
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TFAP2B probe


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  fluorescein

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  black hole quencher-1/3

<400>  69
ngagtcgttt cgaagatttt aagagtgggc gn                                     32


<210>  70
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAC1 forward primer

<400>  70
gagcgattag cgtgcgttc                                                    19


<210>  71
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAC1 reverse primer

<400>  71
aaataacccg aacaaccgcg a                                                 21


<210>  72
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TAC1 probe


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  fluorescein

<220>
<221>  misc_feature
<222>  (28)..(28)
<223>  black hole quencher-1/3

<400>  72
nttgttcgtc gtagtaagtg ttcgcgcn                                          28


<210>  73
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FLRT2 forward primer

<400>  73
agtttttaga tttacgtcgg gc                                                22


<210>  74
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FLRT2 reverse primer

<400>  74
gaacaactcg aaaccgaacg                                                   20


<210>  75
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FLRT2 probe


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  fluorescein

<220>
<221>  misc_feature
<222>  (26)..(26)
<223>  black hole quencher-1/3

<400>  75
ngcgagtttt gcgttcgttt tcgcgn                                            26


<210>  76
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ACTB forward primer

<400>  76
tggtgatgga ggaggtttag taagt                                             25


<210>  77
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ACTB reverse primer

<400>  77
aaccaataaa acctactcct cccttaa                                           27


<210>  78
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ACTB probe


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  fluorescein

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  black hole quencher-1/3

<400>  78
naccaccacc caacacacaa taacaaacac an                                     32


