                         SEQUENCE LISTING

<110>  National University of Singapore
 
<120>  Treating Cancers Using BET Inhibitors

<130>  73483PCT

<150>  SG10202012725W
<151>  2020-12-17

<160>  70    

<170>  PatentIn version 3.5

<210>  1
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1F for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  1
caccgcccct acacgtaact ttatc                                             25


<210>  2
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1R for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  2
aaacgataaa gttacgtgta ggggc                                             25


<210>  3
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2F for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  3
caccggtcct taccagtttc atcac                                             25


<210>  4
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2R for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  4
aaacgtgatg aaactggtaa ggacc                                             25


<210>  5
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 3F for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  5
caccgaccag cctaaacttc catgg                                             25


<210>  6
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 3R for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  6
aaacccatgg aagtttaggc tggtc                                             25


<210>  7
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 4F for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  7
caccgccctc attccaggct taggt                                             25


<210>  8
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 4R for CRISPR IP pulldown enhanceosome at CLDN4 promoter 
       region

<400>  8
aaacacctaa gcctggaatg agggc                                             25


<210>  9
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1F for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  9
caccgaaaaa gcttccgcct gatgg                                             25


<210>  10
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1R for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  10
aaacccatca ggcggaagct ttttc                                             25


<210>  11
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2F for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  11
caccgaaaac aggacgatgt gcggc                                             25


<210>  12
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2R for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  12
aaacgccgca catcgtcctg ttttc                                             25


<210>  13
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 3F for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  13
caccgaaaac atcgaccgaa agcgt                                             25


<210>  14
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 3R for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  14
aaacacgctt tcggtcgatg ttttc                                             25


<210>  15
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 4F for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  15
caccgaaaat agcagtaaac tcaac                                             25


<210>  16
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 4R for non targeting guide RNA for ycc21 IP Mass Spec 
       FBDCas9 project

<400>  16
aaacgttgag tttactgcta ttttc                                             25


<210>  17
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1F for MSH2 knockout

<400>  17
caccggaagc gcacgaagcc gacct                                             25


<210>  18
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1R for MSH2 knockout

<400>  18
aaacaggtcg gcttcgtgcg cttcc                                             25


<210>  19
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2F for MSH2 knockout

<400>  19
caccgtgaga ggctgcttaa tccac                                             25


<210>  20
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2R for MSH2 knockout

<400>  20
aaacgtggat taagcagcct ctcac                                             25


<210>  21
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1F for CLDN4 knockout

<400>  21
caccggccca ttacctgtag cccca                                             25


<210>  22
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1R for CLDN4 knockout

<400>  22
aaactggggc tacaggtaat gggcc                                             25


<210>  23
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2F for CLDN4 knockout

<400>  23
caccgggcac cttacacgta gttgc                                             25


<210>  24
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2R for CLDN4 knockout

<400>  24
aaacgcaact acgtgtaagg tgccc                                             25


<210>  25
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1F for JUNB knockout

<400>  25
caccgcgccc ggatgtgcac taaaa                                             25


<210>  26
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1R for JUNB knockout

<400>  26
aaacttttag tgcacatccg ggcgc                                             25


<210>  27
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2F for JUNB knockout

<400>  27
caccgagcga gggggtgtcc gtaaa                                             25


<210>  28
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2R for JUNB knockout

<400>  28
aaactttacg gacaccccct cgctc                                             25


<210>  29
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1F for SMARCA4/BRG1 knockout

<400>  29
caccggttcc gcccaggggt gggtc                                             25


<210>  30
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1R for SMARCA4/BRG1 knockout

<400>  30
aaacgaccca cccctgggcg gaacc                                             25


<210>  31
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2F for SMARCA4/BRG1 knockout

<400>  31
caccgtgggg ccaccggagc gtacc                                             25


<210>  32
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2R for SMARCA4/BRG1 knockout

<400>  32
aaacggtacg ctccggtggc cccac                                             25


<210>  33
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1F for MSH6 knockout

<400>  33
caccgcttgg ggaagaagct gtaca                                             25


<210>  34
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 1R for MSH6 knockout

<400>  34
aaactgtaca gcttcttccc caagc                                             25


<210>  35
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2F for MSH6 knockout

<400>  35
caccgtagtg actcttacct gtata                                             25


<210>  36
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Guide 2R for MSH6 knockout

<400>  36
aaactataca ggtaagagtc actac                                             25


<210>  37
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT MSH6

<400>  37
gcagtctgct gtagagtgta tc                                                22


<210>  38
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT MSH6

<400>  38
cagaattact gggcgacaca ta                                                22


<210>  39
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward priimer for qRT BRG1

<400>  39
catcactgag aagctggaga ag                                                22


<210>  40
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT BRG1

<400>  40
gctggagaat gctattgagg tat                                               23


<210>  41
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT JUNB

<400>  41
tctaccacga cgactcatac a                                                 21


<210>  42
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT JUNB

<400>  42
ggctcggttt caggagttt                                                    19


<210>  43
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT CLDN4

<400>  43
caactgcctg gaggatgaaa                                                   20


<210>  44
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT CLDN4

<400>  44
caccggcact atcaccataa g                                                 21


<210>  45
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT MSH2

<400>  45
aggctctcct catccagatt                                                   20


<210>  46
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT MSH2

<400>  46
ctgtgatcag aattcctcct cttt                                              24


<210>  47
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT BAZ1B

<400>  47
ttcaccatcc cgcacac                                                      17


<210>  48
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT BAZ1B

<400>  48
ctgactgctt ccagtactct tg                                                22


<210>  49
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT FLRT3

<400>  49
ggaggagaag aaaggatgac tatg                                              24


<210>  50
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT FLRT3

<400>  50
cgagatgggt tcattgctta ttg                                               23


<210>  51
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT FOS

<400>  51
gggatagcct ctcttactac ca                                                22


<210>  52
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT FOS

<400>  52
atgaagttgg cactggagac                                                   20


<210>  53
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for qRT CDH1

<400>  53
ccaccaaagt cacgctgaat a                                                 21


<210>  54
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for qRT CDH1

<400>  54
caggagagga gttgggaaat g                                                 21


<210>  55
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for ChIP-qPCR CLDN4 promoter

<400>  55
gcagagaagc tgggtgataa g                                                 21


<210>  56
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for ChIP-qPCR CLDN4 promoter

<400>  56
gccggataaa gttacgtgta gg                                                22


<210>  57
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for siRNA targeting MSH2#1


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  deoxythymidine

<400>  57
ucugcagagu guugugcuut t                                                 21


<210>  58
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for siRNA targeting MSH2#1


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  deoxythymidine

<400>  58
aagcacaaca cucugcagat t                                                 21


<210>  59
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for siRNA targeting MSH2#2


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  deoxythymidine

<400>  59
ggagguaaau caacauauat t                                                 21


<210>  60
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for siRNA targeting MSH2#2


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  deoxythymidine

<400>  60
uauauguuga uuuaccucct t                                                 21


<210>  61
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for siRNA targeting Control


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  deoxythymidine

<400>  61
guucuugcga uugucucuat t                                                 21


<210>  62
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for siRNA targeting Control


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  deoxythymidine

<400>  62
uagagacaau cgcaagaact t                                                 21


<210>  63
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for MSH2 R524P

<400>  63
ggatattact ttcctgtaac ctgtaagg                                          28


<210>  64
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for MSH2 R524P

<400>  64
ccttacaggt tacaggaaag taatatcc                                          28


<210>  65
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward primer for MSH2 G674S

<400>  65
ggccccaata tgggaagtaa atcaacatat a                                      31


<210>  66
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse primer for MSH2 G674S

<400>  66
tatatgttga tttacttccc atattggggc c                                      31


<210>  67
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CLND4_CSP_R1

<400>  67
aaagcaatca gtgagtac                                                     18


<210>  68
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CLND4_DPN_NR1

<400>  68
ctagacactc tcaatcacc                                                    19


<210>  69
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CDH1_R1 (DPNII)

<400>  69
agagctttct attggatc                                                     18


<210>  70
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CDH1_NR1 (CSP6I)

<400>  70
tagattgtca caacgataag                                                   20


