                         SEQUENCE LISTING

<110>  The Regents of the University of California
       Neal Deveraj
       Dongyang Zhang
 
<120>  Methods and Compositions for Linking RNA Stem Loops

<130>  048537-637001WO

<150>  US 63/117,403
<151>  2020-11-23

<160>  42    

<170>  PatentIn version 3.5

<210>  1
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  1
gcagacugua aaucugc                                                      17


<210>  2
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  modified_base
<222>  (8)..(8)
<223>  n is prequeuosine 1 or a  prequeuosine 1 analog

<220>
<221>  misc_feature
<222>  (8)..(8)
<223>  n is a, c, g, t or u

<400>  2
gcagacunua aaucugc                                                      17


<210>  3
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  3
cctttaatcc acgcgaaccg acc                                               23


<210>  4
<211>  98
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  4
ggaaauuagg ugcgcuuggc guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc       60

cguuaucaac uugaaaaagu ggcaccgagu cggugcuu                               98


<210>  5
<211>  3
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  5
ugu                                                                      3


<210>  6
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  6
gcagactgta aatctgccac tagtaacggc cgccagtgtg ctggaattct gcagatagca       60

gactgtaaat ctgc                                                         74


<210>  7
<211>  96
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  7
nnnnnnnnnn nnnnnnnnnn gttttagagc tagaaatagc aagttaaaat aaggctagtc       60

cgttatcaac ttgaaaaagt ggcaccgagt cggtgc                                 96


<210>  8
<211>  120
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  8
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta gaaatagcaa       60

gttaaaataa ggctagtccg ttatcaactt gaaaaagtgg caccgagtcg gtgctttttt      120


<210>  9
<211>  117
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (22)..(41)
<223>  n is a, c, g, t or u

<400>  9
gcagactgta aatctgcttt tnnnnnnnnn nnnnnnnnnn ngttttagag ctagaaatag       60

caagttaaaa taaggctagt ccgttatcaa cttgaaaaag tggcaccgag tcggtgc         117


<210>  10
<211>  109
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  10
nnnnnnnnnn nnnnnnnnnn gttttagagc tagcagactg taaatctgct agcaagttaa       60

aataaggcta gtccgttatc aacttgaaaa agtggcaccg agtcggtgc                  109


<210>  11
<211>  111
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  11
nnnnnnnnnn nnnnnnnnnn gttttagagc tagaaatagc aagttaaaat aaggcgcaga       60

ctgtaaatct gcgtccgtta tcaacttgaa aaagtggcac cgagtcggtg c               111


<210>  12
<211>  109
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  12
nnnnnnnnnn nnnnnnnnnn gttttagagc tagaaatagc aagttaaaat aaggctagtc       60

cgttatcaac ttgcagactg taaatctgca agtggcaccg agtcggtgc                  109


<210>  13
<211>  112
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  13
nnnnnnnnnn nnnnnnnnnn gttttagagc tagaaatagc aagttaaaat aaggctagtc       60

cgttatcaac ttgaaaaagt ggcaccgagc agactgtaaa tctgctcggt gc              112


<210>  14
<211>  118
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  14
nnnnnnnnnn nnnnnnnnnn gttttagagc tagaaatagc aagttaaaat aaggctagtc       60

cgttatcaac ttgaaaaagt ggcaccgagt cggtgcttat tgcagactgt aaatctgc        118


<210>  15
<211>  122
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  15
nnnnnnnnnn nnnnnnnnnn gttttagagc tagcagactg taaatctgct agcaagttaa       60

aataaggcta gtccgttatc aacttgcaga ctgtaaatct gcaagtggca ccgagtcggt      120

gc                                                                     122


<210>  16
<211>  114
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  16
nnnnnnnnnn nnnnnnnnnn gttttagagc taagactgta aatcttagca agttaaaata       60

aggctagtcc gttatcaact tagactgtaa atctaagtgg caccgagtcg gtgc            114


<210>  17
<211>  106
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  17
nnnnnnnnnn nnnnnnnnnn gttttagagc taactgtaaa ttagcaagtt aaaataaggc       60

tagtccgtta tcaacttact gtaaataagt ggcaccgagt cggtgc                     106


<210>  18
<211>  102
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  n is a, c, g, t or u

<400>  18
nnnnnnnnnn nnnnnnnnnn gttttagagc tactgtaaat agcaagttaa aataaggcta       60

gtccgttatc aacttctgta aaaagtggca ccgagtcggt gc                         102


<210>  19
<211>  141
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (40)..(59)
<223>  n is a, c, g, t or u

<400>  19
ctaatacgac tcactatagc agactgtaaa tctgcttttn nnnnnnnnnn nnnnnnnnng       60

ttttagagct agaaatagca agttaaaata aggctagtcc gttatcaact tgaaaaagtg      120

gcaccgagtc ggtgcttttt t                                                141


<210>  20
<211>  133
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  20
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta gcagactgta       60

aatctgctag caagttaaaa taaggctagt ccgttatcaa cttgaaaaag tggcaccgag      120

tcggtgcttt ttt                                                         133


<210>  21
<211>  136
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  21
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta gaaatagcaa       60

gttaaaataa ggcgcagact gtaaatctgc gtccgttatc aacttgaaaa agtggcaccg      120

agtcggtgct tttttt                                                      136


<210>  22
<211>  133
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  22
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta gaaatagcaa       60

gttaaaataa ggctagtccg ttatcaactt gcagactgta aatctgcaag tggcaccgag      120

tcggtgcttt ttt                                                         133


<210>  23
<211>  136
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  23
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta gaaatagcaa       60

gttaaaataa ggctagtccg ttatcaactt gaaaaagtgg caccgagcag actgtaaatc      120

tgctcggtgc tttttt                                                      136


<210>  24
<211>  142
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  24
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta gaaatagcaa       60

gttaaaataa ggctagtccg ttatcaactt gaaaaagtgg caccgagtcg gtgcttattg      120

cagactgtaa atctgctttt tt                                               142


<210>  25
<211>  146
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  25
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta gcagactgta       60

aatctgctag caagttaaaa taaggctagt ccgttatcaa cttgcagact gtaaatctgc      120

aagtggcacc gagtcggtgc tttttt                                           146


<210>  26
<211>  138
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  26
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta agactgtaaa       60

tcttagcaag ttaaaataag gctagtccgt tatcaactta gactgtaaat ctaagtggca      120

ccgagtcggt gctttttt                                                    138


<210>  27
<211>  130
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  27
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta actgtaaatt       60

agcaagttaa aataaggcta gtccgttatc aacttactgt aaataagtgg caccgagtcg      120

gtgctttttt                                                             130


<210>  28
<211>  126
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide


<220>
<221>  misc_feature
<222>  (19)..(38)
<223>  n is a, c, g, t or u

<400>  28
ctaatacgac tcactatann nnnnnnnnnn nnnnnnnngt tttagagcta ctgtaaatag       60

caagttaaaa taaggctagt ccgttatcaa cttctgtaaa aagtggcacc gagtcggtgc      120

tttttt                                                                 126


<210>  29
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  29
gcagacugua aaucugc                                                      17


<210>  30
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  30
agacuguaaa ucu                                                          13


<210>  31
<211>  9
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  31
acuguaaau                                                                9


<210>  32
<211>  7
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  32
cuguaaa                                                                  7


<210>  33
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  33
gctgctggcc ttcagatggc                                                   20


<210>  34
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  34
ggagaacagc actccgctct                                                   20


<210>  35
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  35
ggagctggtc tgttggagaa                                                   20


<210>  36
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  36
tcccaatcca taatcccacg tt                                                22


<210>  37
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  37
caggagggcc aggagatttg                                                   20


<210>  38
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  38
tgaaatcgag gatctgggcg                                                   20


<210>  39
<211>  2212
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  39
atggtgagca agggcgagga ggataacatg gccatcatca aggagttcat gcgcttcaag       60

gtgcacatgg agggctccgt gaacggccac gagttcgaga tcgagggcga gggcgagggc      120

cgcccctacg agggcaccca gaccgccaag ctgaaggtga ccaagggtgg ccccctgccc      180

ttcgcctggg acatcctgtc ccctcagttc atgtacggct ccaaggccta cgtgaagcac      240

cccgccgaca tccccgacta cttgaagctg tccttccccg agggcttcaa gtgggagcgc      300

gtgatgaact tcgaggacgg cggcgtggtg accgtgaccc aggactcctc cctgcaagac      360

ggcgagttca tctacaaggt gaagctgcgc ggcaccaact tcccctccga cggccccgta      420

atgcagaaga agacgatggg ctgggaggcc tcctccgagc ggatgtaccc cgaggacggc      480

gccctgaagg gcgagatcaa gcagaggctg aagctgaagg acggcggcca ctacgacgct      540

gaggtcaaga ccacctacaa ggccaagaag cccgtgcagc tgcccggcgc ctacaacgtg      600

aacatcaagt tggacatcac ctcccacaac gaggactaca ccatcgtgga acagtacgaa      660

cgcgccgagg gccgccactc caccggcggc atggacgagc tgtacaagga gctagcattg      720

ttcagggctt gaccaacact gggtccctgc aggatccagt gagcaagggc gaggagctgt      780

tcaccggggt ggtgcccatc ctggtcgagc tggacggcga cgtaaacggc cacaagttca      840

gcgtgtccgg cgagggcgag ggcgatgcca cctacggcaa gctgaccctg aagttcatct      900

gcaccaccgg caagctgccc gtgccctggc ccaccctcgt gaccaccctg acctacggcg      960

tgcagtgctt cagccgctac cccgaccaca tgaagcagca cgacttcttc aagtccgcca     1020

tgcccgaagg ctacgtccag gagcgcacca tcttcttcaa ggacgacggc aactacaaga     1080

cccgcgccga ggtgaagttc gagggcgaca ccctggtgaa ccgcatcgag ctgaagggca     1140

tcgacttcaa ggaggacggc aacatcctgg ggcacaagct ggagtacaac tacaacagcc     1200

acaacgtcta tatcatggcc gacaagcaga agaacggcat caaggtgaac ttcaagatcc     1260

gccacaacat cgaggacggc agcgtgcagc tcgccgacca ctaccagcag aacaccccca     1320

tcggcgacgg ccccgtgctg ctgcccgaca accactacct gagcacccag tccgccctga     1380

gcaaagaccc caacgagaag cgcgatcaca tggtcctgct ggagttcgtg accgccgccg     1440

ggatcactct cggcatggac gagctgtaca aggttataac atgggtaacc tctacgtgag     1500

caagggcgag gagctgttca ccggggtggt gcccatcctg gtcgagctgg acggcgacgt     1560

aaacggccac aagttcagcg tgtccggcga gggcgagggc gatgccacct acggcaagct     1620

gaccctgaag ttcatctgca ccaccggcaa gctgcccgtg ccctggccca ccctcgtgac     1680

caccctgacc tacggcgtgc agtgcttcag ccgctacccc gaccacatga agcagcacga     1740

cttcttcaag tccgccatgc ccgaaggcta cgtccaggag cgcaccatct tcttcaagga     1800

cgacggcaac tacaagaccc gcgccgaggt gaagttcgag ggcgacaccc tggtgaaccg     1860

catcgagctg aagggcatcg acttcaagga ggacggcaac atcctggggc acaagctgga     1920

gtacaactac aacagccaca acgtctatat catggccgac aagcagaaga acggcatcaa     1980

ggtgaacttc aagatccgcc acaacatcga ggacggcagc gtgcagctcg ccgaccacta     2040

ccagcagaac acccccatcg gcgacggccc cgtgctgctg cccgacaacc actacctgag     2100

cacccagtcc gccctgagca aagaccccaa cgagaagcgc gatcacatgg tcctgctgga     2160

gttcgtgacc gccgccggga tcactctcgg catggacgag ctgtacaagt aa             2212


<210>  40
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  40
gttcagggct tgaccaacac                                                   20


<210>  41
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  41
ccagcacact ggcggccg                                                     18


<210>  42
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  42
uuauc                                                                    5


