                         SEQUENCE LISTING

<110>  The University of Chicago
 
<120>  HAIRPIN OLIGONUCLEOTIDES AND USES THEREOF

<130>  757154

<150>  63/110,605
<151>  2020-11-06

<160>  89    

<170>  PatentIn version 3.5

<210>  1
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  1
actggaaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt tccagu           56


<210>  2
<211>  59
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  2
ccaactggaa agatcggaag agcacacgat tagacgtgtg ctcttccgat ctttccagu        59


<210>  3
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synethic

<400>  3
ccaactggaa agatcggaag agcacacgat tagacgtgtg ctcttccgat ctttccagut       60

gg                                                                      62


<210>  4
<211>  59
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  4
actggaaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt tccagutgg        59


<210>  5
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(6)
<223>  n is a, c, g, or t

<400>  5
nnnnnngatc gtcggactgt agaactctga acgtc                                  35


<210>  6
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  6
acgttcagag ttctacagtc cgacgatc                                          28


<210>  7
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  7
agacgtgtgc tcttccgatc t                                                 21


<210>  8
<211>  13
<212>  RNA
<213>  Prevotella melaninogenica

<400>  8
aagacgggca agu                                                          13


<210>  9
<211>  18
<212>  RNA
<213>  Prevotella melaninogenica

<400>  9
gcuuguccac cccgccuc                                                     18


<210>  10
<211>  12
<212>  DNA
<213>  Prevotella melaninogenica

<400>  10
ccaccccgcc tc                                                           12


<210>  11
<211>  14
<212>  RNA
<213>  Rothia mucilaginosa

<400>  11
ucuugccucu uacg                                                         14


<210>  12
<211>  17
<212>  RNA
<213>  Rothia mucilaginosa

<400>  12
cguaaggggu uuuucua                                                      17


<210>  13
<211>  10
<212>  DNA
<213>  Rothia mucilaginosa

<400>  13
ggtttttcta                                                              10


<210>  14
<211>  54
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(6)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (49)..(51)
<223>  n is a, c, g, t or u

<400>  14
actnnnagat cggaagagca cacgattaga cgtgtgctct tccgatctnn nagu             54


<210>  15
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(7)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (50)..(53)
<223>  n is a, c, g, t or u

<400>  15
actnnnnaga tcggaagagc acacgattag acgtgtgctc ttccgatctn nnnagu           56


<210>  16
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(8)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (51)..(55)
<223>  n is a, c, g, t or u

<400>  16
actnnnnnag atcggaagag cacacgatta gacgtgtgct cttccgatct nnnnnagu         58


<210>  17
<211>  60
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(9)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (52)..(57)
<223>  n is a, c, g, t or u

<400>  17
actnnnnnna gatcggaaga gcacacgatt agacgtgtgc tcttccgatc tnnnnnnagu       60


<210>  18
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(6)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (51)..(53)
<223>  n is a, c, g, t or u

<400>  18
actnnngatc gtcggactgt agaacattag agttctacag tccgacgatc nnnagu           56


<210>  19
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(7)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (52)..(55)
<223>  n is a, c, g, t or u

<400>  19
actnnnngat cgtcggactg tagaacatta gagttctaca gtccgacgat cnnnnagu         58


<210>  20
<211>  60
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(8)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (53)..(57)
<223>  n is a, c, g, t or u

<400>  20
actnnnnnga tcgtcggact gtagaacatt agagttctac agtccgacga tcnnnnnagu       60


<210>  21
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (4)..(9)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (54)..(59)
<223>  n is a, c, g, t or u

<400>  21
actnnnnnng atcgtcggac tgtagaacat tagagttcta cagtccgacg atcnnnnnna       60

gu                                                                      62


<210>  22
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(6)
<223>  n is a, c, g, or t

<400>  22
nnnnnngatc gtcggactgt agaac                                             25


<210>  23
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(6)
<223>  n is a, c, g, or t

<400>  23
nnnnnnagat cggaagagca cacgc                                             25


<210>  24
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  24
acttgaaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt tcaagu           56


<210>  25
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  25
acttaggaga tcggaagagc acacgattag acgtgtgctc ttccgatctc ctaagu           56


<210>  26
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  26
acttgttaga tcggaagagc acacgattag acgtgtgctc ttccgatcta acaagu           56


<210>  27
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  27
acttaccaga tcggaagagc acacgattag acgtgtgctc ttccgatctg gtaagu           56


<210>  28
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  28
acttccaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt ggaagu           56


<210>  29
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  29
acttttgaga tcggaagagc acacgattag acgtgtgctc ttccgatctc aaaagu           56


<210>  30
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  30
actttgtaga tcggaagagc acacgattag acgtgtgctc ttccgatcta caaagu           56


<210>  31
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  31
acttcacaga tcggaagagc acacgattag acgtgtgctc ttccgatctg tgaagu           56


<210>  32
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  32
acttgcgaga tcggaagagc acacgattag acgtgtgctc ttccgatctc gcaagu           56


<210>  33
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  33
acttctaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt agaagu           56


<210>  34
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  34
acttattaga tcggaagagc acacgattag acgtgtgctc ttccgatcta ataagu           56


<210>  35
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  35
acttggcaga tcggaagagc acacgattag acgtgtgctc ttccgatctg ccaagu           56


<210>  36
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  36
actggaagat cgtcggactg tagaacatta gagttctaca gtccgacgat cttccagu         58


<210>  37
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  37
actcagagat cgtcggactg tagaacatta gagttctaca gtccgacgat ctctgagu         58


<210>  38
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  38
actaccagat cgtcggactg tagaacatta gagttctaca gtccgacgat ctggtagu         58


<210>  39
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  39
acttcaggat cgtcggactg tagaacatta gagttctaca gtccgacgat cctgaagu         58


<210>  40
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  40
actatgggat cgtcggactg tagaacatta gagttctaca gtccgacgat cccatagu         58


<210>  41
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  41
actgatggat cgtcggactg tagaacatta gagttctaca gtccgacgat ccatcagu         58


<210>  42
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  42
actctacgat cgtcggactg tagaacatta gagttctaca gtccgacgat cgtagagu         58


<210>  43
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  43
acttaccgat cgtcggactg tagaacatta gagttctaca gtccgacgat cggtaagu         58


<210>  44
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  44
actagtcatc gtcggactgt agaacattag agttctacag tccgacgatc gactagu          57


<210>  45
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  45
acttggtgat cgtcggactg tagaacatta gagttctaca gtccgacgat caccaagu         58


<210>  46
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  46
actgtctgat cgtcggactg tagaacatta gagttctaca gtccgacgat cagacagu         58


<210>  47
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  47
actccttgat cgtcggactg tagaacatta gagttctaca gtccgacgat caaggagu         58


<210>  48
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  48
actggaaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt tccagu           56


<210>  49
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  49
actcagaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt ctgagu           56


<210>  50
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  50
actaccaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt ggtagu           56


<210>  51
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  51
acttcagaga tcggaagagc acacgattag acgtgtgctc ttccgatctc tgaagu           56


<210>  52
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  52
actatggaga tcggaagagc acacgattag acgtgtgctc ttccgatctc catagu           56


<210>  53
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  53
actgatgaga tcggaagagc acacgattag acgtgtgctc ttccgatctc atcagu           56


<210>  54
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  54
actatggaga tcggaagagc acacgattag acgtgtgctc ttccgatctc catagu           56


<210>  55
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  55
acttaccaga tcggaagagc acacgattag acgtgtgctc ttccgatctg gtaagu           56


<210>  56
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  56
actagtcaga tcggaagagc acacgattag acgtgtgctc ttccgatctg actagu           56


<210>  57
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  57
acttggtaga tcggaagagc acacgattag acgtgtgctc ttccgatcta ccaagu           56


<210>  58
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  58
actgtctaga tcggaagagc acacgattag acgtgtgctc ttccgatcta gacagu           56


<210>  59
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  59
actccttaga tcggaagagc acacgattag acgtgtgctc ttccgatcta aggagu           56


<210>  60
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  60
actggaaaga tcggaagagc acacgattag acgtgtgctc ttccgatctt tccagu           56


<210>  61
<211>  54
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  61
aatgaacggc gaccaccgag atctacacgt tcagagttct acagtccgac gatc             54


<210>  62
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  62
caagcagaag acggcatacg agatcgtgat gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  63
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  63
caagcagaag acggcatacg agatacatcg gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  64
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  64
caagcagaag acggcatacg agatgcctaa gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  65
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  65
caagcagaag acggcatacg agattggtca gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  66
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  66
caagcagaag acggcatacg agatcactgt gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  67
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  67
caagcagaag acggcatacg agatattggc gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  68
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  68
caagcagaag acggcatacg agatgatctg gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  69
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  69
caagcagaag acggcatacg agattcaagt gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  70
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  70
caagcagaag acggcatacg agatctgatc gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  71
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  71
caagcagaag acggcatacg agataagcta gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  72
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  72
caagcagaag acggcatacg agatgtagcc gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  73
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  73
caagcagaag acggcatacg agattacaag gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  74
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  74
caagcagaag acggcatacg agatttgact gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  75
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  75
caagcagaag acggcatacg agatggaact gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  76
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  76
caagcagaag acggcatacg agattgacat gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  77
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  77
caagcagaag acggcatacg agatggacgg gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  78
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  78
caagcagaag acggcatacg agatctctac gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  79
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  79
caagcagaag acggcatacg agatgcggac gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  80
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  80
caagcagaag acggcatacg agattttcac gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  81
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  81
caagcagaag acggcatacg agatggccac gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  82
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  82
caagcagaag acggcatacg agatcgaaac gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  83
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  83
caagcagaag acggcatacg agatcgtacg gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  84
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  84
caagcagaag acggcatacg agatccactc gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  85
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  85
caagcagaag acggcatacg agatgctacc gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  86
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  86
agatcggaag agcacacgat                                                   20


<210>  87
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  87
agacgtgtgc tcttccgatc t                                                 21


<210>  88
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  88
gatcgtcgga ctgtagaaca t                                                 21


<210>  89
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  89
agagttctac agtccgacga tc                                                22


