                         SEQUENCE LISTING

<110>  Ludwig Institute for Cancer Research Ltd
 
<120>  PARALLEL ANALYSIS OF INDIVIDUAL CELLS FOR RNA EXPRESSION AND DNA 
       FROM TARGETED TAGMENTATION BY SEQUENCING

<130>  084276.00295

<150>  63/042,761
<151>  2020-06-23

<160>  53    

<170>  PatentIn version 3.5

<210>  1
<211>  142
<212>  PRT
<213>  Staphylococcus aureus

<400>  1

Ser Leu Lys Asp Asp Pro Ser Gln Ser Ala Asn Leu Leu Ser Glu Ala 
1               5                   10                  15      


Lys Lys Leu Asn Glu Ser Gln Ala Pro Lys Ala Asp Asn Lys Phe Asn 
            20                  25                  30          


Lys Glu Gln Gln Asn Ala Phe Tyr Glu Ile Leu His Leu Pro Asn Leu 
        35                  40                  45              


Asn Glu Glu Gln Arg Asn Gly Phe Ile Gln Ser Leu Lys Asp Asp Pro 
    50                  55                  60                  


Ser Gln Ser Ala Asn Leu Leu Ala Glu Ala Lys Lys Leu Asn Asp Ala 
65                  70                  75                  80  


Gln Ala Pro Lys Ala Asp Asn Lys Phe Asn Lys Glu Gln Gln Asn Ala 
                85                  90                  95      


Phe Tyr Glu Ile Leu His Leu Pro Asn Leu Thr Glu Glu Gln Arg Asn 
            100                 105                 110         


Gly Phe Ile Gln Ser Leu Lys Asp Asp Pro Ser Val Ser Lys Glu Ile 
        115                 120                 125             


Leu Ala Glu Ala Lys Lys Leu Asn Asp Ala Gln Ala Pro Lys 
    130                 135                 140         


<210>  2
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  pMENTs


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5 Phos

<220>
<221>  misc_feature
<222>  (20)..(20)
<223>  dideoxycytosine

<400>  2
ctgtctctta tacacatctc                                                   20


<210>  3
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AdaptorA

<400>  3
tcgtcggcag cgtcagatgt gtataagaga cag                                    33


<210>  4
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Linker-R02

<400>  4
cgaatgctct ggcctctcaa gcacgtggat                                        30


<210>  5
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Blocker-R02

<400>  5
atccacgtgc ttgagaggcc agagcattcg                                        30


<210>  6
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Linker-R03

<400>  6
ggtctgagtt cgcaccgaaa catcggccac                                        30


<210>  7
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Quencher-R03

<400>  7
gtggccgatg tttcggtgcg aactcagacc                                        30


<210>  8
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Anchor-FokI-GH


<220>
<221>  misc_feature
<222>  (41)..(42)
<223>  phosphorothioate bond modification

<400>  8
aagcagtggt atcaacgcag agtgaaggat gtgggggggg gh                          42


<210>  9
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  P5-FokI

<400>  9
acactctttc cctacacgac gctcttccga tct                                    33


<210>  10
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  P5c-NNDC-FokI


<220>
<221>  5Phos
<222>  (1)..(1)

<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  n is a, c, g, or t

<400>  10
nndcagatcg gaagagcgtc gtgtagggaa agagtg                                 36


<210>  11
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  P5H-FokI

<400>  11
acactctttc cctacacgac gctcttccga tcth                                   34


<210>  12
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  P5Hc-NNDC-FokI


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is a, c, g, or t

<400>  12
nndcdagatc ggaagagcgt cgtgtaggga aagagtg                                37


<210>  13
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PA-F

<400>  13
cagacgtgtg ctcttccgat ct                                                22


<210>  14
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PA-R

<400>  14
aagcagtggt atcaacgcag agt                                               23


<210>  15
<211>  51
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  N5XX


<220>
<221>  misc_feature
<222>  (30)..(37)
<223>  n is a, c, g, or t

<400>  15
aatgatacgg cgaccaccga gatctacacn nnnnnnntcg tcggcagcgt c                51


<210>  16
<211>  63
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  P7XX


<220>
<221>  misc_feature
<222>  (25)..(30)
<223>  n is a, c, g, or t

<400>  16
caagcagaag acggcatacg agatnnnnnn gtgactggag ttcagacgtg tgctcttccg       60

atc                                                                     63


<210>  17
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  P5 Universal


<220>
<221>  misc_feature
<222>  (57)..(58)
<223>  phosphorothioate bond modification

<400>  17
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatct         58


<210>  18
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#01_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  18
aggccagagc attcgacatc gcggccgcag atgtgtataa gagacag                     47


<210>  19
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#02_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  19
aggccagagc attcgaatga gcggccgcag atgtgtataa gagacag                     47


<210>  20
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#03_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  20
aggccagagc attcgaagct gcggccgcag atgtgtataa gagacag                     47


<210>  21
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#04_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  21
aggccagagc attcgaacag gcggccgcag atgtgtataa gagacag                     47


<210>  22
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#05_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  22
aggccagagc attcgagaat gcggccgcag atgtgtataa gagacag                     47


<210>  23
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#06_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  23
aggccagagc attcgatacg gcggccgcag atgtgtataa gagacag                     47


<210>  24
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#07_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  24
aggccagagc attcgattac gcggccgcag atgtgtataa gagacag                     47


<210>  25
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#08_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  25
aggccagagc attcgagttg gcggccgcag atgtgtataa gagacag                     47


<210>  26
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#09_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  26
aggccagagc attcgaccgt gcggccgcag atgtgtataa gagacag                     47


<210>  27
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#10_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  27
aggccagagc attcgacgaa gcggccgcag atgtgtataa gagacag                     47


<210>  28
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#11_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  28
aggccagagc attcgatcta gcggccgcag atgtgtataa gagacag                     47


<210>  29
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  DNA_#12_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<400>  29
aggccagagc attcgagggc gcggccgcag atgtgtataa gagacag                     47


<210>  30
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#01_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  30
aggccagagc attcgtcatc cctgcaggtt tttttttttt ttttvn                      46


<210>  31
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#02_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  31
aggccagagc attcgtatga cctgcaggtt tttttttttt ttttvn                      46


<210>  32
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#03_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  32
aggccagagc attcgtagct cctgcaggtt tttttttttt ttttvn                      46


<210>  33
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#04_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  33
aggccagagc attcgtacag cctgcaggtt tttttttttt ttttvn                      46


<210>  34
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#05_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  34
aggccagagc attcgtgaat cctgcaggtt tttttttttt ttttvn                      46


<210>  35
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#06_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  35
aggccagagc attcgttacg cctgcaggtt tttttttttt ttttvn                      46


<210>  36
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#07_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  36
aggccagagc attcgtttac cctgcaggtt tttttttttt ttttvn                      46


<210>  37
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#08_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  37
aggccagagc attcgtgttg cctgcaggtt tttttttttt ttttvn                      46


<210>  38
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#09_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  38
aggccagagc attcgtccgt cctgcaggtt tttttttttt ttttvn                      46


<210>  39
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#10_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  39
aggccagagc attcgtcgaa cctgcaggtt tttttttttt ttttvn                      46


<210>  40
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#11_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  40
aggccagagc attcgttcta cctgcaggtt tttttttttt ttttvn                      46


<210>  41
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#12_RE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  v is a or g, or c

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n is a, c, g, or t

<400>  41
aggccagagc attcgtgggc cctgcaggtt tttttttttt ttttvn                      46


<210>  42
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#01_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  42
aggccagagc attcgtcatc cctgcaggnn nnnn                                   34


<210>  43
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#02_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  43
aggccagagc attcgtatga cctgcaggnn nnnn                                   34


<210>  44
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#03_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  44
aggccagagc attcgtagct cctgcaggnn nnnn                                   34


<210>  45
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#04_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  45
aggccagagc attcgtacag cctgcaggnn nnnn                                   34


<210>  46
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#05_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  46
aggccagagc attcgtgaat cctgcaggnn nnnn                                   34


<210>  47
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#06_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  47
aggccagagc attcgttacg cctgcaggnn nnnn                                   34


<210>  48
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#07_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  48
aggccagagc attcgtttac cctgcaggnn nnnn                                   34


<210>  49
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#08_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  49
aggccagagc attcgtgttg cctgcaggnn nnnn                                   34


<210>  50
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#09_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  50
aggccagagc attcgtccgt cctgcaggnn nnnn                                   34


<210>  51
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#10_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  51
aggccagagc attcgtcgaa cctgcaggnn nnnn                                   34


<210>  52
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#11_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  52
aggccagagc attcgttcta cctgcaggnn nnnn                                   34


<210>  53
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RNA_#12_NRE


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5Phos

<220>
<221>  misc_feature
<222>  (29)..(34)
<223>  n is a, c, g, or t

<400>  53
aggccagagc attcgtgggc cctgcaggnn nnnn                                   34


