                         SEQUENCE LISTING

<110>  Altius Institute for Biomedical Sciences
       The Brigham and Women's Hospital, Inc.
       Stamatoyannopoulos, John A.
       Stergachis, Andrew B.
 
<120>  METHODS, COMPOSITIONS, AND KITS FOR IDENTIFYING REGIONS OF 
       GENOMIC DNA BOUND TO A PROTEIN

<130>  ALTI-730WO

<150>  US 63/004,361
<151>  2020-04-02

<160>  5     

<170>  PatentIn version 3.5

<210>  1
<211>  281
<212>  PRT
<213>  H. influenzae

<400>  1

Met Ala Asn Gln Asn Thr Phe Lys Gln Ala Pro Leu Pro Phe Ile Gly 
1               5                   10                  15      


Gln Lys Arg Met Phe Leu Lys Gln Phe Glu Gln Ile Leu Asn Glu Asn 
            20                  25                  30          


Ile Ser Asp Asn Gly Glu Gly Trp Thr Ile Leu Asp Thr Phe Gly Gly 
        35                  40                  45              


Ser Gly Leu Leu Ser His Thr Ala Lys Arg Leu Lys Pro Lys Ala Arg 
    50                  55                  60                  


Val Ile Tyr Asn Asp Phe Asp Gly Tyr Ala Glu Arg Leu Ala His Ile 
65                  70                  75                  80  


Asp Asp Ile Asn Gln Leu Arg Ala Glu Leu Tyr Ser Val Val Gly Asn 
                85                  90                  95      


Ala Thr Ser Lys Asn Lys Arg Met Thr Lys Asp Cys Lys Ala Glu Cys 
            100                 105                 110         


Ile Arg Ile Ile Gln Asn Phe Lys Gly Tyr Lys Asp Leu Asn Cys Leu 
        115                 120                 125             


Ala Ser Trp Leu Leu Phe Ser Gly Gln Gln Val Ala Thr Leu Asp Asp 
    130                 135                 140                 


Leu Phe Gln His Asn Phe Trp His Cys Ile Arg Gln Ser Asp Tyr Pro 
145                 150                 155                 160 


Lys Ala Asp Gly Tyr Leu Asp Gly Val Glu Ile Val Lys Glu Ser Phe 
                165                 170                 175     


His Thr Leu Leu Pro Lys Phe Ser Asn Asp Pro Lys Ala Leu Phe Val 
            180                 185                 190         


Leu Asp Pro Pro Tyr Leu Cys Thr Lys Gln Glu Ser Tyr Lys Gln Ala 
        195                 200                 205             


Thr Tyr Phe Asp Leu Ile Asp Phe Leu Arg Leu Val Asn Ile Thr Arg 
    210                 215                 220                 


Pro Pro Tyr Val Phe Phe Ser Ser Thr Lys Ser Glu Phe Ile Arg Phe 
225                 230                 235                 240 


Val Asn Tyr Met Leu Glu Asp Lys Val Asp Asn Trp Gln Ala Phe Glu 
                245                 250                 255     


Asn Ala Lys Arg Ile Thr Val Asn Ala Lys Leu Asn Tyr Gln Val Ala 
            260                 265                 270         


Tyr Glu Asp Asn Leu Val Tyr Lys Phe 
        275                 280     


<210>  2
<211>  296
<212>  PRT
<213>  H. influenzae

<400>  2

Met Ser Glu Tyr Leu Glu Tyr Gln Asn Ala Ile Glu Gly Lys Thr Met 
1               5                   10                  15      


Ala Asn Lys Lys Thr Phe Lys Gln Ala Pro Leu Pro Phe Ile Gly Gln 
            20                  25                  30          


Lys Arg Met Phe Leu Lys His Val Glu Ile Val Leu Asn Lys His Ile 
        35                  40                  45              


Asp Gly Glu Gly Glu Gly Trp Thr Ile Val Asp Val Phe Gly Gly Ser 
    50                  55                  60                  


Gly Leu Leu Ser His Thr Ala Lys Gln Leu Lys Pro Lys Ala Thr Val 
65                  70                  75                  80  


Ile Tyr Asn Asp Phe Asp Gly Tyr Ala Glu Arg Leu Asn His Ile Asp 
                85                  90                  95      


Asp Ile Asn Arg Leu Arg Gln Ile Ile Phe Asn Cys Leu His Gly Ile 
            100                 105                 110         


Ile Pro Lys Asn Gly Arg Leu Ser Lys Glu Ile Lys Glu Glu Ile Ile 
        115                 120                 125             


Asn Lys Ile Asn Asp Phe Lys Gly Tyr Lys Asp Leu Asn Cys Leu Ala 
    130                 135                 140                 


Ser Trp Leu Leu Phe Ser Gly Gln Gln Val Gly Ser Val Glu Ala Leu 
145                 150                 155                 160 


Phe Ala Lys Asp Phe Trp Asn Cys Val Arg Gln Ser Asp Tyr Pro Thr 
                165                 170                 175     


Ala Glu Gly Tyr Leu Asp Gly Ile Glu Val Ile Ser Glu Ser Phe His 
            180                 185                 190         


Lys Leu Ile Pro Arg Tyr Gln Asn Gln Asp Lys Val Leu Leu Leu Leu 
        195                 200                 205             


Asp Pro Pro Tyr Leu Cys Thr Arg Gln Glu Ser Tyr Lys Gln Ala Thr 
    210                 215                 220                 


Tyr Phe Asp Leu Ile Asp Phe Leu Arg Leu Ile Asn Leu Thr Lys Pro 
225                 230                 235                 240 


Pro Tyr Ile Phe Phe Ser Ser Thr Lys Ser Glu Phe Ile Arg Tyr Leu 
                245                 250                 255     


Asn Tyr Met Gln Glu Ser Lys Thr Asp Asn Trp Arg Ala Phe Glu Asn 
            260                 265                 270         


Tyr Lys Arg Ile Val Val Lys Ala Ser Ala Ser Lys Asp Gly Ile Tyr 
        275                 280                 285             


Glu Asp Asn Met Ile Tyr Lys Phe 
    290                 295     


<210>  3
<211>  317
<212>  PRT
<213>  Bibersteinia trehalosi

<400>  3

Met Lys Lys Thr Leu Thr Ala Leu Ala Val Ala Ser Leu Ala Ser Ala 
1               5                   10                  15      


Thr Gln Thr Lys Gln Gln Ala Ser Lys Gln Ala Ser Lys Gln Ala Ser 
            20                  25                  30          


Lys Gln Ala Ser Lys Glu Cys Glu Met Ala Lys Val Phe Lys Gln Ala 
        35                  40                  45              


Pro Leu Pro Phe Ile Gly Gln Lys Arg Met Phe Leu Lys His Phe Glu 
    50                  55                  60                  


Gln Val Leu Ala His Ile Pro Asp Asp Gly Asn Gly Trp Thr Ile Val 
65                  70                  75                  80  


Asp Val Phe Gly Gly Ser Gly Leu Leu Ser His Thr Ala Lys Arg Leu 
                85                  90                  95      


Lys Pro Lys Ala Arg Val Ile Tyr Asn Asp Tyr Asp Asn Tyr Ser Glu 
            100                 105                 110         


Arg Leu Gln His Ile Asp Asp Ile Asn Arg Leu Arg Arg Ile Ile Ala 
        115                 120                 125             


Asp Leu Met Ala Asp Thr Pro Lys Tyr Lys Arg Leu Asp Asn Ala Lys 
    130                 135                 140                 


Lys Leu Gln Ile Ile Glu Ala Ile Glu Ala Phe Gln Gly Tyr Lys Asp 
145                 150                 155                 160 


Leu His Ile Leu Cys Ser Trp Leu Ala Phe Ser Gly Gln Gln Val Ser 
                165                 170                 175     


Ser Phe Asp Glu Leu Tyr Lys Gln Asn Phe Trp His Cys Ile Arg Gln 
            180                 185                 190         


Ser Asp Tyr Leu Thr Ala Asp Gly Tyr Leu Asp Gly Val Glu Ile Val 
        195                 200                 205             


Arg Glu Ser Phe His Gln Leu Val Pro Arg Phe Thr Gly Gln Pro Asn 
    210                 215                 220                 


Thr Leu Leu Val Leu Asp Pro Pro Tyr Leu Cys Thr His Gln Glu Ser 
225                 230                 235                 240 


Tyr Lys Gln Glu Arg Tyr Phe Asp Leu Val Asp Phe Leu Arg Leu Ile 
                245                 250                 255     


His Leu Thr Lys Pro Pro Tyr Val Phe Phe Ser Ser Thr Lys Ser Glu 
            260                 265                 270         


Phe Val Arg Phe Ile Asp Ala Met Val Glu Asp Lys Trp Asp Asn Trp 
        275                 280                 285             


Gln Ala Phe Asp Asp Ala Gln Arg Ile Val Val Gln Thr Ser Ala Ser 
    290                 295                 300                 


Tyr Asn Gly Lys Tyr Glu Asp Asn Met Val Tyr Lys Phe 
305                 310                 315         


<210>  4
<211>  227
<212>  PRT
<213>  Escherichia coli

<400>  4

Met Ser Arg Phe Ile Leu Gly Asp Cys Val Arg Val Met Ala Thr Phe 
1               5                   10                  15      


Pro Asp Asn Ala Val Asp Phe Ile Leu Thr Asp Pro Pro Tyr Leu Val 
            20                  25                  30          


Gly Phe Arg Asp Arg Ser Gly Arg Thr Ile Ala Gly Asp Val Asn Asp 
        35                  40                  45              


Asp Trp Leu Gln Pro Ala Ser Asn Glu Met Tyr Arg Val Leu Lys Lys 
    50                  55                  60                  


Asp Ala Leu Met Val Ser Phe Tyr Gly Trp Asn Arg Ile Asp Arg Phe 
65                  70                  75                  80  


Met Ala Ala Trp Lys Arg Ala Gly Phe Ser Val Val Gly His Leu Val 
                85                  90                  95      


Phe Thr Lys Asn Tyr Thr Ser Lys Ala Ala Tyr Val Gly Tyr Arg His 
            100                 105                 110         


Glu Cys Ala Tyr Ile Leu Ala Lys Gly Arg Pro Ala Leu Pro Gln Lys 
        115                 120                 125             


Pro Leu Pro Asp Val Leu Gly Trp Lys Tyr Ser Gly Asn Arg His His 
    130                 135                 140                 


Pro Thr Glu Lys Pro Val Thr Ser Leu Gln Pro Leu Ile Glu Ser Phe 
145                 150                 155                 160 


Thr His Pro Asn Ala Ile Val Leu Asp Pro Phe Ala Gly Ser Gly Ser 
                165                 170                 175     


Thr Cys Val Ala Ala Leu Gln Ser Gly Arg Arg Tyr Ile Gly Ile Glu 
            180                 185                 190         


Leu Leu Glu Gln Tyr His Arg Ala Gly Gln Gln Arg Leu Ala Ala Val 
        195                 200                 205             


Gln Arg Ala Met Gln Gln Gly Ala Ala Asn Asp Asn Trp Phe Glu Pro 
    210                 215                 220                 


Glu Ala Ala 
225         


<210>  5
<211>  16
<212>  DNA
<213>  Artificial sequence

<220>
<223>  synthetic sequence

<400>  5
agatcggaag agcgtc                                                       16


