                         SEQUENCE LISTING

<110>  GEN-PROBE INCORPORATED
       CLARK, Craig
       GETMAN, Damon
       MAJLESSI, Mehrdad
       WALCHER, Marion
 
<120>  DETECTION OF CHLAMYDIA TRACHOMATIS NUCLEIC ACID VARIANTS

<130>  DIA.0108-PCT

<150>  62/896,472
<151>  2019-09-05

<150>  62/704,833
<151>  2020-05-29

<160>  88    

<170>  PatentIn version 3.5

<210>  1
<211>  108
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(108)
<223>  C. trachomatis E/Bour target

<400>  1
cggagtaagt taagcacgcg gacgattgga agagtccgta gagcgatgag aacggttagt       60

aggcaaatcc gctaacataa gatcaggtcg cgatcaaggg gaatcttc                   108


<210>  2
<211>  108
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(108)
<223>  Wildtype (WT) target/template sequence

<400>  2
cggagtaagt taagcacgcg gacgattgga agagtccgta gagcgatgag aacggttagt       60

aggcaaatcc gctaacataa gatcgggtcg cgatcaaggg gaatcttc                   108


<210>  3
<211>  62
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  WT(0) detected portion of the target/template sequence

<400>  3
agagtccgta gagcgatgag aacggttagt aggcaaatcc gctaacataa gatcgggtcg       60

cg                                                                      62


<210>  4
<211>  62
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  WT(1) amplicon, shown as complement of WT(0)

<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Probe binding site

<220>
<221>  misc_feature
<222>  (39)..(62)
<223>  Probe binding site

<400>  4
cgcgacccga ucuuauguua gcggauuugc cuacuaaccg uucucaucgc ucuacggacu       60

cu                                                                      62


<210>  5
<211>  27
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  WT(2) amplicon (tandem probe binding sequence)

<400>  5
cgcgacccga ucuuauguua gcggauu                                           27


<210>  6
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  WT(3) amplicon sequence

<400>  6
cguucucauc gcucuacgga cucu                                              24


<210>  7
<211>  108
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(108)
<223>  Wildtype_A (WT-A) target/template

<400>  7
cggagtaagt taagcacgcg gacgattgga agagtccgta gagcgatgag aacggttagt       60

aggcaaatcc gctaacataa gatcaggtcg cgatcaaggg gaatcttc                   108


<210>  8
<211>  62
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  WT-A(0) detected portion of target/template sequence

<400>  8
agagtccgta gagcgatgag aacggttagt aggcaaatcc gctaacataa gatcaggtcg       60

cg                                                                      62


<210>  9
<211>  62
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  WT-A(1) amplicon, shown as complement of WT-A(0)

<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Probe binding site

<220>
<221>  misc_feature
<222>  (39)..(62)
<223>  Probe binding site

<400>  9
cgcgaccuga ucuuauguua gcggauuugc cuacuaaccg uucucaucgc ucuacggacu       60

cu                                                                      62


<210>  10
<211>  27
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  WT-A(2) amplicon (tandem probe binding sequence)

<400>  10
cgcgaccuga ucuuauguua gcggauu                                           27


<210>  11
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  WT-A(3) amplicon sequence

<400>  11
cguucucauc gcucuacgga cucu                                              24


<210>  12
<211>  108
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(108)
<223>  JP-nvCT C1522T target/template sequence

<400>  12
cggagtaagt taagcacgcg gacgattgga agagtccgta gagtgatgag aacggttagt       60

aggcaaatcc gctaacataa gatcaggtcg cgatcaaggg gaatcttc                   108


<210>  13
<211>  62
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  JP(0) detected portion of target/template sequence

<400>  13
agagtccgta gagtgatgag aacggttagt aggcaaatcc gctaacataa gatcaggtcg       60

cg                                                                      62


<210>  14
<211>  62
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  JP(1) amplicon, shown as complement of JP(0)

<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Probe binding site

<220>
<221>  misc_feature
<222>  (39)..(62)
<223>  Probe binding site

<400>  14
cgcgaccuga ucuuauguua gcggauuugc cuacuaaccg uucucaucac ucuacggacu       60

cu                                                                      62


<210>  15
<211>  27
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  JP(2) amplicon (tandem probe binding sequence)

<400>  15
cgcgaccuga ucuuauguua gcggauu                                           27


<210>  16
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  JP(3) amplicon: JP variant

<400>  16
cguucucauc acucuacgga cucu                                              24


<210>  17
<211>  108
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(108)
<223>  FI-nvCT C1515T target/template

<400>  17
cggagtaagt taagcacgcg gacgattgga agagtctgta gagcgatgag aacggttagt       60

aggcaaatcc gctaacataa gatcaggtcg cgatcaaggg gaatcttc                   108


<210>  18
<211>  62
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  FI(0) detected portion of target/template sequence

<400>  18
agagtctgta gagcgatgag aacggttagt aggcaaatcc gctaacataa gatcaggtcg       60

cg                                                                      62


<210>  19
<211>  62
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  FI(1) amplicon, shown as complement of FI(0)

<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Probe binding site

<220>
<221>  misc_feature
<222>  (39)..(62)
<223>  Probe binding site

<400>  19
cgcgaccuga ucuuauguua gcggauuugc cuacuaaccg uucucaucgc ucuacagacu       60

cu                                                                      62


<210>  20
<211>  27
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  FI(2) amplicon (tandem probe binding sequence)

<400>  20
cgcgaccuga ucuuauguua gcggauu                                           27


<210>  21
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  FI(3) amplicon: FI variant

<400>  21
cguucucauc gcucuacaga cucu                                              24


<210>  22
<211>  108
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(108)
<223>  US-nvCT G1526A target/template

<400>  22
cggagtaagt taagcacgcg gacgattgga agagtccgta gagcgataag aacggttagt       60

aggcaaatcc gctaacataa gatcaggtcg cgatcaaggg gaatcttc                   108


<210>  23
<211>  62
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  US(0) detected portion of target/template sequence

<400>  23
agagtccgta gagcgataag aacggttagt aggcaaatcc gctaacataa gatcaggtcg       60

cg                                                                      62


<210>  24
<211>  62
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  US(1) amplicon, shown as complement of US(0)

<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Probe binding site

<220>
<221>  misc_feature
<222>  (39)..(62)
<223>  Probe binding site

<400>  24
cgcgaccuga ucuuauguua gcggauuugc cuacuaaccg uucuuaucgc ucuacggacu       60

cu                                                                      62


<210>  25
<211>  27
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  US(2) amplicon (tandem probe binding sequence)

<400>  25
cgcgaccuga ucuuauguua gcggauu                                           27


<210>  26
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  US(3) amplicon: US variant

<400>  26
cguucuuauc gcucuacgga cucu                                              24


<210>  27
<211>  108
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(108)
<223>  NO-nvCT G1523A target/template

<400>  27
cggagtaagt taagcacgcg gacgattgga agagtccgta gagcaatgag aacggttagt       60

aggcaaatcc gctaacataa gatcaggtcg cgatcaaggg gaatcttc                   108


<210>  28
<211>  62
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  NO(0) detected portion of target/template sequence

<400>  28
agagtccgta gagcaatgag aacggttagt aggcaaatcc gctaacataa gatcaggtcg       60

cg                                                                      62


<210>  29
<211>  62
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(62)
<223>  NO(1) amplicon, shown as complement of NO(0)

<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Probe binding site

<220>
<221>  misc_feature
<222>  (39)..(62)
<223>  Probe binding site

<400>  29
cgcgaccuga ucuuauguua gcggauuugc cuacuaaccg uucucauugc ucuacggacu       60

cu                                                                      62


<210>  30
<211>  27
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  NO(2) amplicon (tandem probe binding sequence)

<400>  30
cgcgaccuga ucuuauguua gcggauu                                           27


<210>  31
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  NO(3) amplicon: NO variant

<400>  31
cguucucauu gcucuacgga cucu                                              24


<210>  32
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  DP-1 (duplicate probe domain, 24-mer)

<400>  32
agagtccgta gagcgatgag aacg                                              24


<210>  33
<211>  27
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  TP-1 (tandem probe domain, 27-mer)

<400>  33
aatccgctaa cataagatca ggtcgcg                                           27


<210>  34
<211>  33
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(33)
<223>  Non-T7 primer

<400>  34
cggagtaagt taagcacgcg gacgattgga aga                                    33


<210>  35
<211>  22
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Target-binding sequence of T7 promoter-primer

<400>  35
cccgaagatt ccccttgatc gc                                                22


<210>  36
<211>  27
<212>  DNA
<213>  Phage T7


<220>
<221>  promoter
<222>  (1)..(27)

<400>  36
aatttaatac gactcactat agggaga                                           27


<210>  37
<211>  49
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T7 promoter primer


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Phage T7 promoter sequence

<220>
<221>  misc_feature
<222>  (28)..(49)
<223>  C. trachomatis sequence

<400>  37
aatttaatac gactcactat agggagaccc gaagattccc cttgatcgc                   49


<210>  38
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  346978

<220>
<221>  misc_feature
<222>  (9)..(10)
<223>  Non-nucleotide linker and AE label attachment site

<400>  38
agagtccgta gagcgatgag aacg                                              24


<210>  39
<211>  12
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  Surveillance probe core sequence

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  39
gagtctgtag ag                                                           12


<210>  40
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350317 (A)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  40
agagtctgta gagcgatgag aacg                                              24


<210>  41
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350318 (B)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  41
agagtctgta gggcgatgag aacg                                              24


<210>  42
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350319 (C)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  42
agagtctgta gagtgatgag aacg                                              24


<210>  43
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350320 (D)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  43
agagtctgta gagcgatgag aacg                                              24


<210>  44
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350321 (E)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  44
agagtctgta gggcgatgag aacg                                              24


<210>  45
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350322 (F)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  45
agagtctgta gagtgatgag aacg                                              24


<210>  46
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350323 (G)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  46
agagtctgta gagcgatgag a                                                 21


<210>  47
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350324 (H)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  47
agagtctgta gggcgatgag a                                                 21


<210>  48
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350325 (I)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  48
agagtctgta gatcgatgag a                                                 21


<210>  49
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350326 (J)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  49
agagtctgta gagcgatgag a                                                 21


<210>  50
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350327 (K)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  50
agagtctgta gggcgatgag a                                                 21


<210>  51
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350328 (L)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  51
agagtctgta gagtgatgag a                                                 21


<210>  52
<211>  23
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(23)
<223>  350418 (M)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  52
agagtctgta gagcgatgag aac                                               23


<210>  53
<211>  22
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350419 (N)

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  Non-nucleotide linker and AE label attachment site

<400>  53
agagtctgta gagcgatgag aa                                                22


<210>  54
<211>  23
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(23)
<223>  350420 (O)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  54
gagtctgtag agcgatgaga acg                                               23


<210>  55
<211>  22
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350421 (P)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  55
gagtctgtag agcgatgaga ac                                                22


<210>  56
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350422 (Q)

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  Non-nucleotide linker and AE label attachment site

<400>  56
gagtctgtag agcgatgaga a                                                 21


<210>  57
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350078

<220>
<221>  misc_feature
<222>  (9)..(10)
<223>  Non-nucleotide linker and AE label attachment site

<400>  57
agagtctgta gagcgatgag aacg                                              24


<210>  58
<211>  18
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(18)
<223>  Universal duplicate probe core sequence

<220>
<221>  misc_feature
<222>  (1)..(18)
<223>  Backbone of 2' methoxy linkages

<400>  58
guccguagag cgaugaga                                                     18


<210>  59
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350116.1

<220>
<221>  misc_feature
<222>  (9)..(10)
<223>  Non-nucleotide linker and AE label attachment site

<400>  59
agaguccgua gagcgaugag aacg                                              24


<210>  60
<211>  22
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350547

<220>
<221>  misc_feature
<222>  (10)..(11)
<223>  Non-nucleotide linker and AE label attachment site

<400>  60
gaguccguag agcgaugaga ac                                                22


<210>  61
<211>  18
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(18)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (1)..(18)
<223>  350545

<220>
<221>  misc_feature
<222>  (8)..(9)
<223>  Non-nucleotide linker and AE label attachment site

<400>  61
guccguagag cgaugaga                                                     18


<210>  62
<211>  20
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  350537

<220>
<221>  misc_feature
<222>  (9)..(10)
<223>  Non-nucleotide linker and AE label attachment site

<400>  62
aguccguaga gcgaugagaa                                                   20


<210>  63
<211>  20
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  350538

<220>
<221>  misc_feature
<222>  (10)..(11)
<223>  Non-nucleotide linker and AE label attachment site

<400>  63
aguccguaga gcgaugagaa                                                   20


<210>  64
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350539

<220>
<221>  misc_feature
<222>  (11)..(12)
<223>  Non-nucleotide linker and AE label attachment site

<400>  64
agaguccgua gagcgaugag aacg                                              24


<210>  65
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350541

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  Non-nucleotide linker and AE label attachment site

<400>  65
agaguccgua gagcgaugag aacg                                              24


<210>  66
<211>  19
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(19)
<223>  Tandem probe core sequence

<220>
<221>  misc_feature
<222>  (11)..(12)
<223>  Non-nucleotide linker and AE label attachment site

<400>  66
gcuarcauaa gaucagguc                                                    19


<210>  67
<211>  26
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(26)
<223>  350440 (R)

<220>
<221>  misc_feature
<222>  (18)..(19)
<223>  Non-nucleotide linker and AE label attachment site

<400>  67
caaatccgct aacataagat caggtc                                            26


<210>  68
<211>  26
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(26)
<223>  350441 (S)

<220>
<221>  misc_feature
<222>  (19)..(20)
<223>  Non-nucleotide linker and AE label attachment site

<400>  68
caaatccgct aacataagat caggtc                                            26


<210>  69
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350442 (T)

<220>
<221>  misc_feature
<222>  (16)..(17)
<223>  Non-nucleotide linker and AE label attachment site

<400>  69
aatccgctaa cataagatca ggtc                                              24


<210>  70
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350443 (U)

<220>
<221>  misc_feature
<222>  (17)..(18)
<223>  Non-nucleotide linker and AE label attachment site

<400>  70
aatccgctaa cataagatca ggtc                                              24


<210>  71
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350502

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  Non-nucleotide linker and AE label attachment site

<400>  71
uccgcuaaca uaagaucagg ucgc                                              24


<210>  72
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350506

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (16)..(17)
<223>  Non-nucleotide linker and AE label attachment site

<400>  72
aauccgcuaa cauaagauca gguc                                              24


<210>  73
<211>  22
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350507

<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  Non-nucleotide linker and AE label attachment site

<400>  73
ccgcuaacau aagaucaggu cg                                                22


<210>  74
<211>  23
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(23)
<223>  350509

<220>
<221>  misc_feature
<222>  (1)..(23)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  Non-nucleotide linker and AE label attachment site

<400>  74
ccgcuaacau aagaucaggu cgc                                               23


<210>  75
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350510

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  Non-nucleotide linker and AE label attachment site

<400>  75
ccgcuaacau aagaucaggu cgcg                                              24


<210>  76
<211>  21
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350511

<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  Non-nucleotide linker and AE label attachment site

<400>  76
ccgcuaacau aagaucaggu c                                                 21


<210>  77
<211>  22
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350567

<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  Non-nucleotide linker and AE label attachment site

<400>  77
ccgcuaacau aagaucaggu cg                                                22


<210>  78
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350566

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  Non-nucleotide linker and AE label attachment site

<400>  78
ccgcuaacau aagaucaggu cgcg                                              24


<210>  79
<211>  22
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350565

<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  Non-nucleotide linker and AE label attachment site

<400>  79
ccgcuaacau aagaucaggu cg                                                22


<210>  80
<211>  24
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  350563

<220>
<221>  misc_feature
<222>  (1)..(24)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  Non-nucleotide linker and AE label attachment site

<400>  80
uccgcuaaca uaagaucagg ucgc                                              24


<210>  81
<211>  22
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350568

<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  Non-nucleotide linker and AE label attachment site

<400>  81
gcuaacauaa gaucaggucg cg                                                22


<210>  82
<211>  21
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350570

<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  Non-nucleotide linker and AE label attachment site

<400>  82
gctaacataa gatcaggtcg c                                                 21


<210>  83
<211>  22
<212>  DNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  350571

<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  Non-nucleotide linker and AE label attachment site

<400>  83
gctaacataa gatcaggtcg cg                                                22


<210>  84
<211>  21
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350611

<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  Non-nucleotide linker and AE label attachment site

<400>  84
cgcuaacaua agaucagguc g                                                 21


<210>  85
<211>  21
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  350610

<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  Non-nucleotide linker and AE label attachment site

<400>  85
ccgcuagcau aagaucaggu c                                                 21


<210>  86
<211>  20
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  350609

<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  Non-nucleotide linker and AE label attachment site

<400>  86
cgcuaacaua agaucagguc                                                   20


<210>  87
<211>  20
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  350601

<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (11)..(12)
<223>  Non-nucleotide linker and AE label attachment site

<400>  87
gcuaacauaa gaucaggucg                                                   20


<210>  88
<211>  20
<212>  RNA
<213>  Chlamydia trachomatis


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  350600

<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  Backbone of 2' methoxy linkages

<220>
<221>  misc_feature
<222>  (12)..(13)
<223>  Non-nucleotide linker and AE label attachment site

<400>  88
cgcuagcaua agaucagguc                                                   20


