                         SEQUENCE LISTING

<110>  GEN-PROBE INCORPORATED
       O'DONNELL, Meghan A.
       DARBY, Paul M.
       GETMAN, Damon K.
 
<120>  COMPOSITIONS, METHODS AND KITS FOR DETECTING TREPONEMA PALLIDUM

<130>  DIA.0070.02-PCT

<150>  US 62/891,181
<151>  2019-08-23

<160>  39    

<170>  PatentIn version 3.5

<210>  1
<211>  114
<212>  RNA
<213>  Treponema pallidum

<400>  1
gcacaugucc ugugauccgg ggaugaccga augggguaac ccgacagggu aaagccuugu       60

cauugccuuc cugaaugaau agggagggua aggcgaaacu gggugaacug aacc            114


<210>  2
<211>  131
<212>  RNA
<213>  Treponema denticola

<400>  2
uccugugaua cggaaauagc cgaauggggu aacccguuag uagugauacu gacauuacgc       60

ucuugaauaa aauagagagg uaaagcgaua cugagugaac ugaaccaucu aaguaacuca      120

aggaaaagaa a                                                           131


<210>  3
<211>  31
<212>  DNA
<213>  Treponema pallidum

<400>  3
ggttcagttc acccagtttc gccttaccct c                                      31


<210>  4
<211>  27
<212>  DNA
<213>  Treponema pallidum

<400>  4
cagttcaccc agtttcgcct taccctc                                           27


<210>  5
<211>  22
<212>  DNA
<213>  Treponema pallidum

<400>  5
ggttcagttc acccagtttc gc                                                22


<210>  6
<211>  19
<212>  DNA
<213>  Treponema pallidum

<400>  6
ccagtttcgc cttaccctc                                                    19


<210>  7
<211>  18
<212>  DNA
<213>  Treponema pallidum

<400>  7
cagttcaccc agtttcgc                                                     18


<210>  8
<211>  22
<212>  DNA
<213>  Treponema pallidum

<400>  8
ggttcagttc acccagtttc gc                                                22


<210>  9
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T7 phage promoter

<400>  9
aatttaatac gactcactat agggaga                                           27


<210>  10
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T7 promoter primer

<400>  10
aatttaatac gactcactat agggagacca gtttcgcctt accctc                      46


<210>  11
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T7 promoter primer

<400>  11
aatttaatac gactcactat agggagacag ttcacccagt ttcgc                       45


<210>  12
<211>  49
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T7 promoter primer

<400>  12
aatttaatac gactcactat agggagaggt tcagttcacc cagtttcgc                   49


<210>  13
<211>  61
<212>  DNA
<213>  Treponema pallidum

<400>  13
gcacatgtcc tgtgatccgg ggatgaccga atggggtaac ccgacagggt aaagccttgt       60

c                                                                       61


<210>  14
<211>  52
<212>  DNA
<213>  Treponema pallidum

<400>  14
ctgtgatccg gggatgaccg aatggggtaa cccgacaggg taaagccttg tc               52


<210>  15
<211>  29
<212>  DNA
<213>  Treponema pallidum

<400>  15
gcacatgtcc tgtgatccgg ggatgaccg                                         29


<210>  16
<211>  20
<212>  DNA
<213>  Treponema pallidum

<400>  16
cgacagggta aagccttgtc                                                   20


<210>  17
<211>  20
<212>  DNA
<213>  Treponema pallidum

<400>  17
ctgtgatccg gggatgaccg                                                   20


<210>  18
<211>  17
<212>  DNA
<213>  Treponema pallidum

<400>  18
gcacatgtcc tgtgatc                                                      17


<210>  19
<211>  47
<212>  DNA
<213>  Treponema pallidum

<400>  19
cccgacaggg taaagccttg tcattgcctt cctgaatgaa tagggag                     47


<210>  20
<211>  27
<212>  DNA
<213>  Treponema pallidum

<400>  20
cccgacaggg taaagccttg tcattgc                                           27


<210>  21
<211>  33
<212>  DNA
<213>  Treponema pallidum

<400>  21
gccttgtcat tgccttcctg aatgaatagg gag                                    33


<210>  22
<211>  13
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(13)
<223>  Backbone includes 2'-O-methyl analogs

<400>  22
gccuuccuga aug                                                          13


<210>  23
<211>  14
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(14)
<223>  Backbone includes 2'-O-methyl analogs

<400>  23
cgacagggua aagc                                                         14


<210>  24
<211>  16
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(16)
<223>  Backbone includes 2'-O-methyl analogs

<400>  24
ccgacagggu aaagcc                                                       16


<210>  25
<211>  16
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(16)
<223>  Backbone includes 2'-O-methyl analogs

<400>  25
cccgacaggg uaaagc                                                       16


<210>  26
<211>  13
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(13)
<223>  Backbone includes 2'-O-methyl analogs

<400>  26
gccuugucau ugc                                                          13


<210>  27
<211>  22
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone includes 2'-O-methyl analogs

<400>  27
gccuuccuga augaauaggg ag                                                22


<210>  28
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Molecular torch hybridization probe


<220>
<221>  misc_feature
<222>  (1)..(17)
<223>  Backbone includes 2'-O-methyl analogs

<220>
<221>  misc_feature
<222>  (1)..(17)
<223>  5' fluorophore/3' quencher

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  C9 linker between bases 13/14

<400>  28
gccuuccuga augaggc                                                      17


<210>  29
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Molecular torch hybridization probe


<220>
<221>  misc_feature
<222>  (1)..(18)
<223>  Backbone includes 2'-O-methyl analogs

<220>
<221>  misc_feature
<222>  (1)..(18)
<223>  5' fluorophore/3' quencher

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  C9 linker between bases 14/15

<400>  29
cgacagggua aagcgucg                                                     18


<210>  30
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Molecular torch hybridization probe


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  Backbone includes 2'-O-methyl analogs

<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  5' fluorophore/3' quencher

<220>
<221>  misc_feature
<222>  (16)..(17)
<223>  C9 linker between bases 16/17

<400>  30
ccgacagggu aaagccgucg g                                                 21


<210>  31
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Molecular torch hybridization probe


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  Backbone includes 2'-O-methyl analogs

<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  5' fluorophore/3' quencher

<220>
<221>  misc_feature
<222>  (16)..(17)
<223>  C9 linker between bases 16/17

<400>  31
cccgacaggg uaaagcucgg g                                                 21


<210>  32
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Molecular torch hybridization probe


<220>
<221>  misc_feature
<222>  (1)..(17)
<223>  Backbone includes 2'-O-methyl analogs

<220>
<221>  misc_feature
<222>  (1)..(17)
<223>  5' fluorophore/3' quencher

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  C9 linker between bases 13/14

<400>  32
gccuugucau ugcaggc                                                      17


<210>  33
<211>  26
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Molecular torch hybridization probe


<220>
<221>  misc_feature
<222>  (1)..(26)
<223>  Backbone includes 2'-O-methyl analogs

<220>
<221>  misc_feature
<222>  (1)..(26)
<223>  5' fluorophore/3' quencher

<220>
<221>  misc_feature
<222>  (22)..(23)
<223>  C9 linker between bases 22/23

<400>  33
gccuuccuga augaauaggg agaggc                                            26


<210>  34
<211>  27
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Backbone includes 2'-O-methyl analogs

<400>  34
gcaagcccgc gcggcccuac aaccccu                                           27


<210>  35
<211>  19
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(19)
<223>  Backbone includes 2'-O-methyl analogs

<400>  35
cgguacuugu ccacuaucg                                                    19


<210>  36
<211>  22
<212>  RNA
<213>  Treponema pallidum


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone includes 2'-O-methyl analogs

<400>  36
cgguaguugu cgaguauuua gc                                                22


<210>  37
<211>  60
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Target capture oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Target-complementary sequence

<220>
<221>  misc_feature
<222>  (1)..(27)
<223>  Backbone includes 2'-O-methyl analogs

<400>  37
gcaagcccgc gcggcccuac aaccccuttt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa       60


<210>  38
<211>  52
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Target capture oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(19)
<223>  Target-complementary sequence

<220>
<221>  misc_feature
<222>  (1)..(19)
<223>  Backbone includes 2'-O-methyl analogs

<400>  38
cgguacuugu ccacuaucgt ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa               52


<210>  39
<211>  55
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Target capture oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Target-complementary sequence

<220>
<221>  misc_feature
<222>  (1)..(22)
<223>  Backbone includes 2'-O-methyl analogs

<400>  39
cgguaguugu cgaguauuua gctttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa            55


