                         SEQUENCE LISTING

<110>  	Icahn School of Medicine at Mount Sinai
       	Fang, Gang
       	Tourancheau, Alan  
      
<120>  	METHOD FOR DE NOVO DETECTION, IDENTIFICATION AND 
       	FINE MAPPING OF MULTIPLE FORMS OF NUCLEIC ACID MODIFICATIONS

<130>	093698-658567 P-181102-WO

<140>	PCT/US20/33901
<141>	2020-05-21

<150>  	US 62/851,205
<151>  	2019-05-22

<160>  	89   

<170>  	PatentIn version 3.5


<210>  1
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G5mCWGC; w is a or t/u

<400>  1
gcwgc        

<210>  2
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GGAT4mCC

<400>  2
ggatcc

<210>  3
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GAT5mC

<400>  3
gatc

<210>  4
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  5mCCGG

<400>  4
ccgg

<210>  5
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C6mACNNNNNRTAAA;n is a or g or c or t/u, unknown, or other and r is g or a

<400>  5
cacnnnnnrt aaa

<210>  6
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GGW5mCC; w is a or t/u

<400>  6
ggwcc

<210>  7
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GTAT6mAC

<400>  7
gtatac

<210>  8
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TTT6mAYNNNNNGTG; y is t/u or c and n is a or g or c or t/u, unknown, or other 

<400>  8
tttaynnnnn gtg

<210>  9
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  VGAC6mAT; v is a or g or c

<400>  9
vgacat

<210>  10
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  A6mACNNNNNNGTGC; n is a or g or c or t/u, unknown, or other

<400>  10
aacnnnnnng tgc

<210>  11
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C5mCWGG;w is a or t/u

<400>  11
ccwgg

<210>  12
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GC6mACNNNNNNGTT; n is a or g or c or t/u, unknown, or other

<400>  12
gcacnnnnnn gtt

<210>  13
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ATTA6mAT

<400>  13
attaat

<210>  14
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C6mATG

<400>  14
catg

<210>  15
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CRT6mANNNNNNNWC; n is a or g or c or t/u, unknown, or other, r is g or a and w is a or t/u

<400>  15
crtannnnnn nwc

<210>  16
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CS6mAG; s is g or c

<400>  16
csag

<210>  17
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CTRY6mAG; r is g or a and y is t/u or c

<400>  17
ctryag

<210>  18
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CY6mANNNNNNTTC; y is t/u or c and n is a or g or c or t/u, unknown, or other

<400>  18
cyannnnnnt tc

<210>  19
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G5mCGC

<400>  19
gcgc

<210>  20
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G6mAGG

<400>  20
gagg

<210>  21
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G6mANNNNNNNTAYG; y is t/u or c and n is a or g or c or t/u, unknown, or other

<400>  21
gannnnnnnt ayg

<210>  22
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GA6mANNNNNNTRG; r is g or a and n is a or g or c or t/u, unknown, or other

<400>  22
gaannnnnnt rg

<210>  23
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GA6mATTC

<400>  23
gaattc

<210>  24
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GG5mCC

<400>  24
ggcc

<210>  25
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GMRG6mA; r is g or a and m is a or c

<400>  25
gmrga

<210>  26
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GT6mAC

<400>  26
gtac

<210>  27
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GTNN6mAC; n is a or g or c or t/u, unknown, or other

<400>  27
gtnnac

<210>  28
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T4mCTTC

<400>  28
tcttc

<210>  29
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TCG6mA

<400>  29
tcga

<210>  30
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TCNNG6mA; n is a or g or c or t/u, unknown, or other

<400>  30
tcnnga

<210>  31
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TGC6mA

<400>  31
tgca

<210>  32
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  4mCTNAG; n is a or g or c or t/u, unknown, or other

<400>  32
ctnag

<210>  33
<211>  4
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AG4mCT

<400>  33
agct

<210>  34
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CCA4mCGK; k is g or t/u

<400>  34
ccacgk


<210>  35
<211>  7
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GCYYG6mAT; y is t/u or c

<400>  35
gcyygat


<210>  36
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C5mCGCGG

<400>  36
ccgcgg

<210>  37
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G5mCCGGC

<400>  37
gccggc

<210>  38
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G6mAGNNNNNTAC; n is a or g or c or t/u, unknown, or other

<400>  38
gagnnnnnta c

<210>  39
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GC6mANNNNNNNNTGC; n is a or g or c or t/u, unknown, or other

<400>  39
gcannnnnnn ntgc


<210>  40
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GGNN5mCC; n is a or g or c or t/u, unknown, or other

<400>  40
ggnncc

<210>  41
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GGTG6mA

<400>  41
ggtga

<210>  42
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GT6mANNNNNCTC; n is a or g or c or t/u, unknown, or other

<400>  42
gtannnnnct c

<210>  43
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RG5mCGCY; y is t/u or c and r is g or a

<400>  43
rgcgcy


<210>  44
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G5mCCGGC

<400>  44
gccggc

<210>  45
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  w is a or t/u

<400>  45
ggwtaa

<210>  46
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  w is a or t/u and n is a or g or c or t/u, unknown, or other

<400>  46
ggwcna

<210>  47
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  n is a or g or c or t/u, unknown, or other

<400>  47
gtannnnncc c

<210>  48
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GT6mANNNNNCTC; n is a or g or c or t/u, unknown, or other

<400>  48
gtannnnnct c

<210>  49
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T5mCACC

<400>  49
tcacc

<210>  50
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  y is t/u or c and r is g or a 

<400>  50
yggccr

<210>  51
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  w is a or t/u

<400>  51
wggccw

<210>  52
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CTGG6mAG

<400>  52
ctggag

<210>  53
<211>  7
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CCTCT6mAG

<400>  53
cctctag

<210>  54
<211>  7
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  STA6mATTC; s is g or c

<400>  54
staattc

<210>  55
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CC6mACC

<400>  55
ccacc

<210>  56
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ACCG5mCG

<400>  56
accgag

<210>  57
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  A5mCGGG

<400>  57
acggg

<210>  58
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C5mCCGT

<400>  58
cccgt

<210>  59
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  KC5mCGGM; k is g or t/u and m is a or c

<400>  59
kccggm

<210>  60
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  W5mCCGGW; w is a or t/u 

<400>  60
wccggw

<210>  61
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AG5mCTC

<400>  61
agctc

<210>  62
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CGW5mCG; w is a or t/u 

<400>  62
cgwcg

<210>  63
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CTG6mAAG

<400>  63
ctgcag

<210>  64
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GAG5mCT

<400>  64
gagct

<210>  65
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  R5mCCGGY; r is g or a and y is t/u or c

<400>  65
rccggy

<210>  66
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AGC6mANNNNNNRTC; r is g or a and n is a or g or c or t/u, unknown, or other

<400>  66
agcannnnnn rtc

<210>  67
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G6mAYNNNNNNTGCT; y is t/u or c and n is a or g or c or t/u, unknown, or other

<400>  67
gaynnnnnnt gct

<210>  68
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AA6mAAGC

<400>  68
aacagc

<210>  69
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  ATGC6mAT

<400>  69
atgcat

<210>  70
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  6mAYCNNNNRTAG; y is t/u or c, r is g or a, and n is a or g or c or t/u, unknown, or other

<400>  70
aycnnnnrta g

<210>  71
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C5mCNGG; n is a or g or c or t/u, unknown, or other

<400>  71
ccngg

<210>  72
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CGW5mCG; w is a or t/u 

<400>  72
cgwcg

<210>  73
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CT6mAYNNNNGRT; y is t/u or c, r is g or a, and n is a or g or c or t/u, unknown, or other

<400>  73
ctaynnnngr t

<210>  74
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GAG5mCCC

<400>  74
gagccc

<210>  75
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GAG5mCTC

<400>  75
gagctc

<210>  76
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GGG5mCTC

<400>  76
gggctc

<210>  77
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GGN5mCC; n is a or g or c or t/u, unknown, or other

<400>  77
ggncc

<210>  78
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AC6mAYNNNNNNNTGG; y is t/u or c and n is a or g or c or t/u, unknown, or other

<400>  78
acaynnnnnn ntgg

<210>  79
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CC6mANNNNNNNRTGT; r is g or a and n is a or g or c or t/u, unknown, or other

<400>  79
ccannnnnnn rtgt

<210>  80
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C5mCAGA

<400>  80
ccaga

<210>  81
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GG6mAAGC

<400>  81
ggcagc

<210>  82
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GGN5mCC;  is a or g or c or t/u, unknown, or other

<400>  82
ggncc

<210>  83
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GTG6mATG

<400>  83
gtgatg

<210>  84
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T5mCTGG

<400>  84
tctgg

<210>  85
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  AG6mATG

<400>  85
agatg

<210>  86
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  mutant

<400>  C5mCCGC
cccgc

<210>  87
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  C5mCWGA; w is a or t/u

<400>  87
ccwga

<210>  88
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  G5mCGGG

<400>  88
gcggg

<210>  89
<211>  5
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  T5mCWGG; w is a or t/u

<400>  89
tcwgg

