                         SEQUENCE LISTING

<110>  PentaBase ApS
 
<120>  Methods for detecting variant nucleic acids

<130>  P5295PC00

<160>  8     

<170>  PatentIn version 3.5

<210>  1
<211>  301
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<222>  (147)..(171)
<223>  mononucleotide repeats

<400>  1
gccatcatgg aggatgacga gttggcccta gacttagaag acttgctgag cttttcttac       60

caggtggcaa agggcatggc tttcctcgcc tccaagaatg taagtgggag tgattctcta      120

aagagttttg tgttttgttt ttttgatttt tttttttttt tttttttttt tgagaacaga      180

gcattttaga gccatagtta aaatgcagaa tgtcattttg aagtgtggta accaaaagca      240

gaggaaattt agtttcttca tgttccaact gctgtctctt tggaattcct gttctaattt      300

a                                                                      301


<210>  2
<211>  401
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<222>  (222)..(248)
<223>  mononucleotide repeats

<400>  2
gttttttaaa atctttagaa ctggatccag tggtatagaa atcttcgatt tttaaattct       60

taattttagg ttgcagtttc atcactgtct gcggtaatca agtttttaga actcttatca      120

gatgattcca actttggaca gtttgaactg actacttttg acttcagcca gtatatgaaa      180

ttggatattg cagcagtcag agcccttaac ctttttcagg taaaaaaaaa aaaaaaaaaa      240

aaaaaaaagg gttaaaaatg ttgaatggtt aaaaaatgtt ttcattgaca tatactgaag      300

aagcttataa aggagctaaa atattttgaa atattattat acttggatta gataactagc      360

tttaaatggc tgtatttttc tctcccctcc tccactccac t                          401


<210>  3
<211>  301
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<222>  (188)..(209)
<223>  mononucleotide repeats

<400>  3
ccctttctaa atgcgtattc gtgtaaatat attgggagag agctttgaat tagaacgtcc       60

ttttccgaaa taggaaccac tgctactctc taaaaaaggc aagcagataa aagagaacac      120

gaaaaatatt cctactccgc attcacactt tctggtcact cgcgtttaca aacaagaaaa      180

gtgttgctaa aaaaaaaaaa aaaaaaaaag gccaggggag acatacattt aaatataaaa      240

atagaactgt gccagcgact ccggctggaa ttctgctgaa agggatgtgt cttcagaaac      300

c                                                                      301


<210>  4
<211>  291
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<222>  (151)..(172)
<223>  mononucleotide repeats

<400>  4
tctccaaagt tgatctgatt gtaaatatta aactgacatc tttatgttgc aggtaaagga       60

cctggataat cgaggcttgt caaggacata aatgtcacgt ccagctctga tatgcttcgc      120

actgagcaca tcacatttag gacgttgaag attttttttt tttttttttt ttaatatgca      180

gtttgtaaga acaaaactgg atggcatcag aattgtctgg aagttttgtc ttgggcagta      240

tgggctgggc caaatgaaat gatttttata attctaaaca ggttaccaaa t               291


<210>  5
<211>  301
<212>  DNA
<213>  Homo sapiens

<400>  5
caaatgaccc cttcctgccc atcactgcct tcctcaagac ctaaaatagc tccctattta       60

gtgaaaaatt atctgaatat ttaaggtctg ccttaacgtg atccccattg ctgaatttta      120

cctcctgact ccaaaaactc ttctcttccc tgggcccagt cctatttttt tttttttttt      180

tttttttgtg agacagagtc tcactctgtc acccaggttg gaatgcaatg gcacaatctc      240

cgctcactgc aagctccgcc tcccgggttc acgccattct cctgcctcag cctcccgaat      300

a                                                                      301


<210>  6
<211>  601
<212>  DNA
<213>  Homo sapiens


<220>
<221>  misc_feature
<222>  (299)..(327)
<223>  mononucleotide repeats

<400>  6
ttaaaaagca aaaaattggc tgggcacagt ggctcacacc tgtaattcca gcacttcagg       60

aggctgaggc aggaagattg cttgagccca gaaattcaat accagcctgg gcaagataat      120

gagaccccat ctctgcaaaa aatgaaaaat aaactagcca ggtgtggtgg catgcaccta      180

tgcccccagc cactcaagag gctgaggtgg gaggatcact tgagcccagg aggtcgaggc      240

tgcagtgagc tgtgattgca ctacactcca gcctgggtga cataatgaga ccctgtctca      300

aaaaaaaaaa aaaaaaaaaa aaaaaaactg gagccaggca cagtaggaca gtagtaattc      360

atgcctgtag tcctagctta catttcagta gaattgttta gggatattaa gtctgttgct      420

taaacttgta aaactttatt atatattgaa aaacatgcgt tgactaattt tatgagtatt      480

aattgtcttc ttttacagta actggacctc tgtcagaact gcaaattgca tatgttagca      540

gagaaacact gcaggtaaat caagtgctaa ttcaaaaata acatttttca ttaaactaag      600

g                                                                      601


<210>  7
<211>  35
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Exemplary reporter oligonucleotides


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is a hydrophobic nucleotide

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  n is a hydrophobic nucleotide

<400>  7
cncctttttt tttttttttt tttttttttt ttanc                                  35


<210>  8
<211>  35
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Exemplary reporter oligonucleotides


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  z is a hydrophobic nucleotide

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  An internal quencher is inserted between residues 15 and 16

<220>
<221>  misc_feature
<222>  (24)..(24)
<223>  z is a hydrophobic nucleotide

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  n is a, c, g, or t

<400>  8
cncctttttt tttttttttt tttttttttt ttanc                                  35


