                               SEQUENCE LISTING

<110> CLARET BIOSCIENCE, LLC
 
<120> METHODS AND COMPOSITIONS FOR ANALYZING NUCLEIC ACID

<130> AD2793 PCT

<140> PCT/US2020/026421
<141> 2020-04-02

<150> US 62/925,132
<151> 2019-10-23

<150> US 62/861,594
<151> 2019-06-14

<150> US 62/830,211
<151> 2019-04-05

<160> 41    

<170> PatentIn version 3.5

<210> 1
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 1
tttttttttt tttttttttt                                                   20


<210> 2
<211> 10
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (6)..(10)
<223> a, c, t, g, unknown or other

<400> 2
gagtcnnnnn                                                              10


<210> 3
<211> 51
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (51)..(51)
<223> a, c, t, g, unknown or other

<400> 3
ccatactgtg gtcgtcacct attaccccgc gtaaaggtag gctatgtcat n                51


<210> 4
<211> 52
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (51)..(52)
<223> a, c, t, g, unknown or other

<400> 4
gtgaattgtt gatgtcctgg gtgcctcgtc ccaaaagctg tcctcacgac nn               52


<210> 5
<211> 53
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (51)..(53)
<223> a, c, t, g, unknown or other

<400> 5
gcttctcgaa cccgcgatcc ggccgatccg gcataatggg ttgatttaga nnn              53


<210> 6
<211> 54
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (51)..(54)
<223> a, c, t, g, unknown or other

<400> 6
cgacacggat attccatcaa gagacgggcc tatggtccct gtgatgatgt nnnn             54


<210> 7
<211> 55
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (51)..(55)
<223> a, c, t, g, unknown or other

<400> 7
accttgtgtg ttgctgaagc aaagccgcgt gaccgtttta accagcgaac nnnnn            55


<210> 8
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (51)..(56)
<223> a, c, t, g, unknown or other

<400> 8
attttaccac gagttcctta cgacggctgt gatgccacgg taggcaggta nnnnnn           56


<210> 9
<211> 51
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (1)..(1)
<223> a, c, t, g, unknown or other

<400> 9
ncgctttacg ggtcctgggc cggggtgcga taccttgcag aaatcgaggc c                51


<210> 10
<211> 52
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (1)..(2)
<223> a, c, t, g, unknown or other

<400> 10
nnaggactct gccgtcgacg agttcgttaa ttcacggcat cacgtgcgta gt               52


<210> 11
<211> 53
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (1)..(3)
<223> a, c, t, g, unknown or other

<400> 11
nnnacctccg tcgcgctatg ttctgttgca ttcgaccttc tccgttctgt ggg              53


<210> 12
<211> 54
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (1)..(4)
<223> a, c, t, g, unknown or other

<400> 12
nnnnacaaga ggagcatccg tattaccgcc tatatcgcct acgtttagag catt             54


<210> 13
<211> 55
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (1)..(5)
<223> a, c, t, g, unknown or other

<400> 13
nnnnngtaaa tcccacacag ctgtcggctt atatggtcat tggacggcgt aatag            55


<210> 14
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (1)..(6)
<223> a, c, t, g, unknown or other

<400> 14
nnnnnnccag acagccatag aggttacaag catagcaatt tgcatcagtt cgcaga           56


<210> 15
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 15
atgacatagc ctacctttac gcggggtaat aggtgacgac cacagtatgg                  50


<210> 16
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 16
gtcgtgagga cagcttttgg gacgaggcac ccaggacatc aacaattcac                  50


<210> 17
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 17
tctaaatcaa cccattatgc cggatcggcc ggatcgcggg ttcgagaagc                  50


<210> 18
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 18
acatcatcac agggaccata ggcccgtctc ttgatggaat atccgtgtcg                  50


<210> 19
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 19
gttcgctggt taaaacggtc acgcggcttt gcttcagcaa cacacaaggt                  50


<210> 20
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 20
tacctgccta ccgtggcatc acagccgtcg taaggaactc gtggtaaaat                  50


<210> 21
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 21
ggcctcgatt tctgcaaggt atcgcacccc ggcccaggac ccgtaaagcg                  50


<210> 22
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 22
actacgcacg tgatgccgtg aattaacgaa ctcgtcgacg gcagagtcct                  50


<210> 23
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 23
cccacagaac ggagaaggtc gaatgcaaca gaacatagcg cgacggaggt                  50


<210> 24
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 24
aatgctctaa acgtaggcga tataggcggt aatacggatg ctcctcttgt                  50


<210> 25
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 25
ctattacgcc gtccaatgac catataagcc gacagctgtg tgggatttac                  50


<210> 26
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 26
tctgcgaact gatgcaaatt gctatgcttg taacctctat ggctgtctgg                  50


<210> 27
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 27
gtaaaggtag gctatgtcat                                                   20


<210> 28
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 28
gtgcctcgtc ccaaaagctg tcctcacgac                                        30


<210> 29
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 29
gcttctcgaa cccgcgatcc ggccgatccg gcataatggg                             40


<210> 30
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 30
cgacacggat attccatcaa gagacgggcc tatggtccct gtgatgatgt                  50


<210> 31
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 31
attttaccac accttgtgtg ttgctgaagc aaagccgcgt gaccgtttta accagcgaac       60


<210> 32
<211> 70
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 32
ccattcgggc ataatatgaa ctatacgcag cttatcccgg gcccgtaaca aacaatttgc       60

gtgaggtatg                                                              70


<210> 33
<211> 80
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 33
gtcccactca gagaattagc agccctggtc tagcgaggga tgccgcttag cgtcggttga       60

atttcgctgc actacagacg                                                   80


<210> 34
<211> 90
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 34
cgctttacgg gtcctgggcc ggggtgcgat accttgcaga atctgcgcct cttggtggcg       60

ccccatcagt agtgtctaca cgggcgctgt                                        90


<210> 35
<211> 100
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      polynucleotide"

<400> 35
gtaaatccca cacagctgtc ggcttatatg gtcattggac ggcgtaatag acaagaggag       60

catccgtatt accgcctata tcgcctacgt ttagagcatt                            100


<210> 36
<211> 110
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      polynucleotide"

<400> 36
ggttcctaac aggtgattac cagtgcagtt agccatttat cctcgtcaaa aagccacgtt       60

ccagacagcc atagaggtta caagcatagc aatttgcatc agttcgcaga                 110


<210> 37
<211> 120
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      polynucleotide"

<400> 37
gacggcccta gtctgcttct cgagacaatc tgctagaact cggacgcctc gcactgtact       60

gatgcatggt ccgtaatcga ggtgaaaact acacggtatg acatcagcga taactggttt      120


<210> 38
<211> 33
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 38
acactctttc cctacacgac gctcttccga tct                                    33


<210> 39
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"

<400> 39
agatcggaag agcacacgtc tgaactccag tcac                                   34


<210> 40
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (1)..(7)
<223> a, c, t, g, unknown or other

<400> 40
nnnnnnnaga tcggaagagc gtcgtgtagg gaaagagtgt                             40


<210> 41
<211> 41
<212> DNA
<213> Artificial Sequence

<220>
<221> source
<223> /note="Description of Artificial Sequence: Synthetic
      oligonucleotide"


<220>
<221> modified_base
<222> (35)..(41)
<223> a, c, t, g, unknown or other

<400> 41
gtgactggag ttcagacgtg tgctcttccg atctnnnnnn n                           41


