                               SEQUENCE LISTING

<110> THE TRUSTEES OF COLUMBIA UNIVERSITY IN THE CITY OF NEW YORK
 
<120> SYSTEMS AND METHODS FOR ANALYZING SEQUENCING DATA

<130> 070050.6355

<140> PCT/US2020/023017
<141> 2020-03-16

<150> 62/870,226
<151> 2019-07-03

<150> 62/827,643
<151> 2019-04-01

<150> 62/819,311
<151> 2019-03-15

<160> 13    

<170> PatentIn version 3.5

<210> 1
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 1
tgggatgatt gattactccc agctgtcgta tgccgt                                 36


<210> 2
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<221> modified_base
<222> (6)..(16)
<223> a, c, t, g, unknown or other

<400> 2
atgatnnnnn nnnnnnctag                                                   20


<210> 3
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 3
atgatacacc gaggctctag                                                   20


<210> 4
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (13)..(14)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (17)..(19)
<223> a, c, t, g, unknown or other

<400> 4
tggnnnnnta ccnntannna                                                   20


<210> 5
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 5
tggaccgata cccctagata                                                   20


<210> 6
<211> 13
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 6
tcagactatt ggc                                                          13


<210> 7
<211> 13
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 7
tctgaaggga tgc                                                          13


<210> 8
<211> 13
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 8
gccgctcgaa atc                                                          13


<210> 9
<211> 13
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 9
cttgggtctc ggc                                                          13


<210> 10
<211> 13
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 10
cttccggtcg gtc                                                          13


<210> 11
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 11
gttatgatta cacgtgttcc                                                   20


<210> 12
<211> 20
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 12
guuaugauua cacguguucc                                                   20


<210> 13
<211> 20
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 13
Ile Phe Phe Pro Asp Asp Tyr Leu Ala Ile Asn Leu Ser Met Cys Phe 
1               5                   10                  15      


Leu Gly Val Phe 
            20  


