                         SEQUENCE LISTING

<110>  Ontera Inc.
       Pearson, Michael
       Morin, Trevor  J
 
<120>  Relative Quantification of Genetic Variants in a Sample

<130>  28938-45641/WO

<150>  62/815,763
<151>  2019-03-08

<150>  62/933,935
<151>  2019-11-11

<160>  46    

<170>  PatentIn version 3.5

<210>  1
<211>  800
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  1
acactaaatg catgtttaga ttaaagcttg taaatttaag tttgagttaa atttaagtta       60

gtaaattgag tttgcaaaaa taacttagtg tactacgaaa ttgagtagtt ttcagacaaa      120

attttagttg cacatagttt tgaggataac caaactatgt ttagcattca aaagtacttt      180

ttgaacagtt aaccaaacat gtcctaaatc attatacatt aacaaattcc tttattaaaa      240

aaagtttaaa tatgatttat aatgttcata gtattaagtt ctggattatt agtttttaaa      300

acatttgatc tataaggtta gttttatcaa gcggcaagtc aatcgtgtcg ttcacatctt      360

tgcaagagca cctcgtttct atgctaatta ctgcattttt tttattttaa cctgtatgta      420

tgatcttatt ttgaatgaaa tgcaataagt tatttctagt aaaaaaaaat aaacatttga      480

tagaaacaaa ttaaagcatg caaaaataac tcattagcat cggttaaatt gaagggtttg      540

aataatttgc acaaggttct gaattcaaat cttgttcatt gtaaaaaata aagcatgaaa      600

aaaagagggg caaaatttaa acataaataa taaggattcg gtaagatcga gaatcgcaat      660

gtagggattc agataaaaat atgttaagca gattgaagga taatatatat atatatatat      720

atatatatat atatatatat tgtatctgaa ggataatatt ttaaatttac tgaagcatag      780

ctccaaaatt acgcggtttc                                                  800


<210>  2
<211>  800
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  2
ttgaagattt aggaacttgg ggtttatgga aattggaatt gggattaagg gtttgtatcc       60

cttgtgccat gttgttaatt tgtgccattc ttgaaagatc tgctagagtc agcttgtcag      120

cgtgtcctct ccaaatgaaa tgaacttcct tatatagagg aagggtcttg cgaaggatag      180

tgggattgtg cgtcatccct tacgtcagtg gagatatcac atcaatccac ttgctttgaa      240

gacgtggttg gaacgtcttc tttttccacg atgctcctcg tgggtggggg tccatctttg      300

ggaccactgt cggcagaggc atcttcaacg atggcctttc ctttatcgca atgatggcat      360

ttgtaggagc caccttcctt ttccatttgg gttccctatg tttattttaa cctgtatgta      420

tgatcttatt ttgaatgaaa tgcaataagt tatttctagt aaaaaaaaat aaacatttga      480

tagaaacaaa ttaaagcatg caaaaataac tcattagcat cggttaaatt gaagggtttg      540

aataatttgc acaaggttct gaattcaaat cttgttcatt gtaaaaaata aagcatgaaa      600

aaaagagggg caaaatttaa acataaataa taaggattcg gtaagatcga gaatcgcaat      660

gtagggattc agataaaaat atgttaagca gattgaagga taatatatat atatatatat      720

atatatatat atatatatat tgtatctgaa ggataatatt ttaaatttac tgaagcatag      780

ctccaaaatt acgcggtttc                                                  800


<210>  3
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  3
cagttaacca aacatgtcct aaatc                                             25


<210>  4
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  4
catcttcaac gatggccttt c                                                 21


<210>  5
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  5
tcaaaccctt caatttaacc ga                                                22


<210>  6
<211>  800
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  6
aagtccccat agattacata accgacaaaa acaatgccca tatctaggaa gccaatacag       60

tcgatataaa taacattaat ccacacctaa atgtcataac tcataaacaa ccctaagcat      120

taaattggag tccaagtact agagaaaggc ttaatttcgt attgtaatct ccctcagaat      180

ttcttaatct tgtgatcaac aaagcatatc ctcgttttaa attctaaagg ttatggcaaa      240

attcactggc atacgaacaa ttcatatatc cattcctatt atatatagtt ggcagaagta      300

caaggaggcg ccaaatagaa aacacaaatt ggaacggtga agagaaagaa gagtacctcg      360

gagagagttg aggcgagaga tgagatcggg agggaagaga ttgggatcgg agaagaactg      420

tttgaggcga atggcctggt cgtcgcggcc atcgtcgaga agttcgtgaa gaagctcgaa      480

tgcggtgaga aggtagttct cttccaacag aaagttcacc acgcaattgc acagcgaaga      540

tctctccacg tccattttct ctctctgtct ctgatcttaa gccattcatt caagacaaga      600

caagagaaga gaagagaaga gaagagaaca ctctcagtca gatcgtggtt tcaactttca      660

agactgtgct agctagttag gtgccatctt acatgtttac tttttttctt tataagatta      720

aattgctgaa taccatgctc tcctgtgtcc aaagcagtac acccgcgtaa aaatagattt      780

catcgtcctt tcgattttac                                                  800


<210>  7
<211>  802
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  7
aattaaataa atcaattact tcataaataa ttttttttat agaatatgtt gacattctag       60

ccggatatag aactaatgta aagaaacctt aaaaattttg tttggaagaa tatgttattg      120

aaagacaaat ctaattaagt ttatcagggt catttgttga agataggaaa ccttcagcaa      180

tttgaatatt aagtaactgc ttctcccaga atgatcggag tttctcctcc tgctattaca      240

tgagcaaaaa taaaaaataa ataaaagata agattaagct tcaacatgtg aaggagtagt      300

acactcacca gtgaccctaa taggcaacag catgaaaaaa aataaaaaag aataaaaata      360

gcatctacat atagcttctc gttgttagaa aaacaaaact atttgggatc ggagaagaac      420

tgtttgaggc gaatggcctg gtcgtcgcgg ccatcgtcga gaagttcgtg aagaagctcg      480

aatgcggtga gaaggtagtt ctcttccaac agaaagttca ccacgcaatt gcacagcgaa      540

gatctctcca cgtccatttt ctctctctgt ctctgatctt aagccattca ttcaagacaa      600

gacaagagaa gagaagagaa gagaagagaa cactctcagt cagatcgtgg tttcaacttt      660

caagactgtg ctagctagtt aggtgccatc ttacatgttt actttttttc tttataagat      720

taaattgctg aataccatgc tctcctgtgt ccaaagcagt acacccgcgt aaaaatagat      780

ttcatcgtcc tttcgatttt ac                                               802


<210>  8
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  8
aagaagagta cctcggagag ag                                                22


<210>  9
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  9
ctcccagaat gatcggagtt tc                                                22


<210>  10
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  10
aactaccttc tcaccgcatt c                                                 21


<210>  11
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  11
cgagcttctt cacgaacttc tc                                                22


<210>  12
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  12
accgcattcg agcttctt                                                     18


<210>  13
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  13
ctttctgttg gaagagaact acct                                              24


<210>  14
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  14
gagagatctt cgctgtgcaa                                                   20


<210>  15
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  15
gcaattgcgt ggtgaact                                                     18


<210>  16
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  16
aggccattcg cctcaaa                                                      17


<210>  17
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  17
cacgaacttc tcgacgatgg                                                   20


<210>  18
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  18
ggccattcgc ctcaaacag                                                    19


<210>  19
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  19
cccttcaatt taaccgatgc taat                                              24


<210>  20
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  20
gcccatatct aggaagccaa tac                                               23


<210>  21
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  21
ccacacctaa atgtcataac tcataaac                                          28


<210>  22
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  22
agatcgggag ggaagagatt                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  23
gtacaaggag gcgccaaata                                                   20


<210>  24
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  24
ttcgtattgt aatctccctc agaat                                             25


<210>  25
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  25
tccaagtact agagaaaggc ttaat                                             25


<210>  26
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  26
aggaagccaa tacagtcgat ataa                                              24


<210>  27
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  27
tcactggcat acgaacaatt ca                                                22


<210>  28
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  28
tggagtccaa gtactagaga aagg                                              24


<210>  29
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  29
tccctcagaa tttcttaatc ttgtg                                             25


<210>  30
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  30
gaacagttaa ccaaacatgt cctaa                                             25


<210>  31
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  31
ttcgtattgt aatctccctc agaa                                              24


<210>  32
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  32
ggagtttctc ctcctgctat tac                                               23


<210>  33
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  33
acactcacca gtgaccctaa ta                                                22


<210>  34
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  34
tgatcggagt ttctcctcct                                                   20


<210>  35
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  35
ggtcatttgt tgaagatagg aaacc                                             25


<210>  36
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  36
aaggagtagt acactcacca gt                                                22


<210>  37
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  37
cctaataggc aacagcatga aa                                                22


<210>  38
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  38
tcaacatgtg aaggagtagt aca                                               23


<210>  39
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  39
gcatctacat atagcttctc gttgt                                             25


<210>  40
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  40
gtacactcac cagtgaccct aata                                              24


<210>  41
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  41
ccctaatagg caacagcatg aa                                                22


<210>  42
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  42
caacgatggc ctttccttta tc                                                22


<210>  43
<211>  802
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  43
aattaaataa atcaattact tcataaataa ttttttttat agaatatgtt gacattctag       60

ccggatatag aactaatgta aagaaacctt aaaaattttg tttggaagaa tatgttattg      120

aaagacaaat ctaattaagt ttatcagggt catttgttga agataggaaa ccttcagcaa      180

tttgaatatt aagtaactgc ttctcccaga atgatcggag tttctcctcc tgctattaca      240

tgagcaaaaa taaaaaataa ataaaagata agattaagct tcaacatgtg aaggagtagt      300

acactcacca gtgaccctaa taggcaacag catgaaaaaa aataaaaaag aataaaaata      360

gcatctacat atagcttctc gttgttagaa aaacaaaact atttgggatc ggagaagaac      420

tgtttgaggc gaatggcctg gtcgtcgcgg ccatcgtcga gaagttcgtg aagaagctcg      480

aatgcggtga gaaggtagtt ctcttccaac agaaagttca ccacgcaatt gcacagcgaa      540

gatctctcca cgtccatttt ctctctctgt ctctgatctt aagccattca ttcaagacaa      600

gacaagagaa gagaagagaa gagaagagaa cactctcagt cagatcgtgg tttcaacttt      660

caagactgtg ctagctagtt aggtgccatc ttacatgttt actttttttc tttataagat      720

taaattgctg aataccatgc tctcctgtgt ccaaagcagt acacccgcgt aaaaatagat      780

ttcatcgtcc tttcgatttt ac                                               802


<210>  44
<211>  800
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence

<400>  44
gaaaccgcgt aattttggag ctatgcttca gtaaatttaa aatattatcc ttcagataca       60

atatatatat atatatatat atatatatat atatatatta tccttcaatc tgcttaacat      120

atttttatct gaatccctac attgcgattc tcgatcttac cgaatcctta ttatttatgt      180

ttaaattttg cccctctttt tttcatgctt tattttttac aatgaacaag atttgaattc      240

agaaccttgt gcaaattatt caaacccttc aatttaaccg atgctaatga gttatttttg      300

catgctttaa tttgtttcta tcaaatgttt attttttttt actagaaata acttattgca      360

tttcattcaa aataagatca tacatacagg ttaaaataaa catagggaac ccaaatggaa      420

aaggaaggtg gctcctacaa atgccatcat tgcgataaag gaaaggccat cgttgaagat      480

gcctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat cgtggaaaaa      540

gaagacgttc caaccacgtc ttcaaagcaa gtggattgat gtgatatctc cactgacgta      600

agggatgacg cacaatccca ctatccttcg caagaccctt cctctatata aggaagttca      660

tttcatttgg agaggacacg ctgacaagct gactctagca gatctttcaa gaatggcaca      720

aattaacaac atggcacaag ggatacaaac ccttaatccc aattccaatt tccataaacc      780

ccaagttcct aaatcttcaa                                                  800


<210>  45
<211>  800
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence


<220>
<221>  misc_feature
<222>  (118)..(118)
<223>  n is c or g

<220>
<221>  misc_feature
<222>  (211)..(211)
<223>  n is c or g

<220>
<221>  misc_feature
<222>  (219)..(219)
<223>  n is a or c

<220>
<221>  misc_feature
<222>  (564)..(564)
<223>  n is t or c

<220>
<221>  misc_feature
<222>  (596)..(596)
<223>  n is c or g

<220>
<221>  misc_feature
<222>  (601)..(601)
<223>  n is c or g

<220>
<221>  misc_feature
<222>  (611)..(611)
<223>  n is g or c

<220>
<221>  misc_feature
<222>  (619)..(619)
<223>  n is g or c

<400>  45
aagtccccat agattacata accgacaaaa acaatgccca tatctaggaa gccaatacag       60

tcgatataaa taacattaat ccacacctaa atgtcataac tcataaacaa ccctaagnat      120

taaattggag tccaagtact agagaaaggc ttaatttcgt attgtaatct ccctcagaat      180

ttcttaatct tgtgatcaac aaagcatatc ntcgttttna attctaaagg ttatggcaaa      240

attcactggc atacgaacaa ttcatatatc cattcctatt atatatagtt ggcagaagta      300

caaggaggcg ccaaatagaa aacacaaatt ggaacggtga agagaaagaa gagtacctcg      360

gagagagttg aggcgagaga tgagatcggg agggaagaga ttgggatcgg agaagaactg      420

tttgaggcga atggcctggt cgtcgcggcc atcgtcgaga agttcgtgaa gaagctcgaa      480

tgcggtgaga aggtagttct cttccaacag aaagttcacc acgcaattgc acagcgaaga      540

tctctccacg tccattttct ctcnctgtct ctgatcttaa gccattcatt caaganaaga      600

naagagaaga naagagaana gaagagaaca ctctcagtca gatcgtggtt tcaactttca      660

agactgtgct agctagttag gtgccatctt acatgtttac tttttttctt tataagatta      720

aattgctgaa taccatgctc tcctgtgtcc aaagcagtac acccgcgtaa aaatagattt      780

catcgtcctt tcgattttac                                                  800


<210>  46
<211>  800
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Sequence


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is A or G

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  n is G or A

<220>
<221>  misc_feature
<222>  (131)..(131)
<223>  n is G or A

<220>
<221>  misc_feature
<222>  (154)..(154)
<223>  n is A or G

<220>
<221>  misc_feature
<222>  (160)..(160)
<223>  n is C or T

<220>
<221>  misc_feature
<222>  (318)..(318)
<223>  n is C or T

<220>
<221>  misc_feature
<222>  (331)..(332)
<223>  n is A or T

<220>
<221>  misc_feature
<222>  (389)..(389)
<223>  n is G or T

<220>
<221>  misc_feature
<222>  (397)..(398)
<223>  n is T or A

<220>
<221>  misc_feature
<222>  (405)..(405)
<223>  n is A, T, G, or C

<220>
<221>  misc_feature
<222>  (406)..(406)
<223>  n is T or G

<220>
<221>  misc_feature
<222>  (538)..(538)
<223>  n is A or C

<220>
<221>  misc_feature
<222>  (564)..(564)
<223>  n is T or G

<220>
<221>  misc_feature
<222>  (615)..(615)
<223>  n is G or A

<220>
<221>  misc_feature
<222>  (626)..(626)
<223>  n is A or C

<220>
<221>  misc_feature
<222>  (694)..(694)
<223>  n is T or A

<400>  46
gnaaccgcgt aattttggag ctatgcttca ntaaatttaa aatattatcc ttcagataca       60

atatatatat atatatatat atatatatat atatatatta tccttcaatc tgcttaacat      120

atttttatct naatccctac attgcgattc tcgntcttan cgaatcctta ttatttatgt      180

ttaaattttg cccctctttt tttcatgctt tattttttac aatgaacaag atttgaattc      240

agaaccttgt gcaaattatt caaacccttc aatttaaccg atgctaatga gttatttttg      300

catgctttaa tttgtttnta tcaaatgttt nntttttttt actagaaata acttattgca      360

tttcattcaa aataagatca tacatacang ttaaaannaa aaaanngcag taattagcat      420

agaaacgagg tgctcttgca aagatgtgaa cgacacgatt gacttgccgc ttgataaaac      480

taaccttata gatcaaatgt tttaaaaact aataatccag aacttaatac tatgaacntt      540

ataaatcata tttaaacttt tttnaataaa ggaatttgtt aatgtataat gatttaggac      600

atgtttggtt aactnttcaa aaagtncttt tgaatgctaa acatagtttg gttatcctca      660

aaactatgtg caactaaaat tttgtctgaa aacnactcaa tttcgtagta cactaagtta      720

tttttgcaaa ctcaatttac taacttaaat ttaactcaaa cttaaattta caagctttaa      780

tctaaacatg catttagtgt                                                  800


