                         SEQUENCE LISTING

<110>  THE UNIVERSITY OF CHICAGO
       KRISHNAN, Yamuna
       CHAKRABORTY, Kasturi
       LEUNG, Ka Ho
       SAMINATHAN, Anand
 
<120>  METHODS OF DETERMINING PH AND CALCIUM OR CHLORIDE CONCENTRATION 
       IN SAMPLES

<130>  18-1897-WO

<150>  US 62/774,314
<151>  2019-12-02

<160>  24    

<170>  PatentIn version 3.5

<210>  1
<211>  60
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' Alexa 488

<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  Bromo cytosine

<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  Bromo cytosine

<220>
<221>  misc_feature
<222>  (17)..(17)
<223>  Bromo cytosine

<220>
<221>  misc_feature
<222>  (23)..(23)
<223>  Bromo cytosine

<400>  1
cccctaaccc ctaaccccta accccatata tatcctagaa cgacagacaa acagtgagtc       60


<210>  2
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5'  Dibenzocyclooctyne-amine (DBCO)

<220>
<221>  misc_feature
<222>  (30)..(31)
<223>  iAlexa 647N

<400>  2
gactcactgt ttgtctgtcg ttctaggata atattttgtt atgtgttatg tgttat           56


<210>  3
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' Alexa 488

<400>  3
ccccaacccc aatacatttt acgcctggtg cc                                     32


<210>  4
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3' Alexa 647

<400>  4
ccgaccgcag gatcctataa aaccccaacc cc                                     32


<210>  5
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  iDBCON

<400>  5
ttataggatc ctgcggtcgg ggcaccaggc gtaaaatg                               38


<210>  6
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' Oregon Green

<400>  6
ataacacata acacataaca aaatatatat cctagaacga cagacaaaca gtgagtc          57


<210>  7
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' Ca2+ fluorophore

<220>
<221>  misc_feature
<222>  (30)..(31)
<223>  Second Label

<400>  7
gactcactgt ttgtctgtcg ttctaggata atattttgtt atgtgttatg tgttat           56


<210>  8
<211>  60
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' First Label

<400>  8
cccctaaccc ctaaccccta accccatata tatcctagaa cgacagacaa acagtgagtc       60


<210>  9
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (20)..(21)
<223>  Ca2+ fluorophore

<400>  9
ttataggatc ctgcggtcgg ggcaccaggc gtaaaatgta                             40


<210>  10
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' First Label

<400>  10
ccccaacccc aatacatttt acgcctggtg cc                                     32


<210>  11
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3' Second Label

<400>  11
ccgaccgcag gatcctataa aaccccaacc cc                                     32


<210>  12
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' First Label

<400>  12
ataacacata acacataaca aaatatatat cctagaacga cagacaaaca gtgagtc          57


<210>  13
<211>  7
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Greater than or equal to 2 cytosine residues

<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  A, T, or G

<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  Greater than or equal to 2 cytosine residues

<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  A, T, or G

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  Greater than or equal to 2 cytosine residues

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  A, T, or G

<220>
<221>  misc_feature
<222>  (7)..(7)
<223>  Greater than or equal to 2 cytosine residues

<400>  13
cncncnc                                                                  7


<210>  14
<211>  7
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Greater than or equal to 3 cytosine residues

<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  A, T, or G

<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  Greater than or equal to 3 cytosine residues

<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  A, T, or G

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  Greater than or equal to 3 cytosine residues

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  A, T, or G

<220>
<221>  misc_feature
<222>  (7)..(7)
<223>  Greater than or equal to 3 cytosine residues

<400>  14
cncncnc                                                                  7


<210>  15
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' BAC-NH2-Lysine

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  3' Lysine-COOH

<400>  15
atcaacactg ca                                                           12


<210>  16
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (29)..(30)
<223>  iAlexa 647

<400>  16
tattgtgtat tgtgtattgt tttatatata taggatcttg ctgtctggtg tgcagtgttg       60

at                                                                      62


<210>  17
<211>  53
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (53)..(53)
<223>  3' Alexa 546

<400>  17
caccagacag caagatccta tatatatacc ccaatcccca atccccaatc ccc              53


<210>  18
<211>  53
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  Bromo cytosine

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  Bromo cytosine

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  Bromo cytosine

<220>
<221>  misc_feature
<222>  (51)..(51)
<223>  Bromo cytosine

<400>  18
caccagacag caagatccta tatatatacc ccaatcccca atccccaatc ccc              53


<210>  19
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (29)..(30)
<223>  iAlexa 647

<400>  19
tattgtgtat tgtgtattgt tttatatata taggatcttg ctgtctggtg tgcagtgttg       60

at                                                                      62


<210>  20
<211>  53
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  20
caccagacag caagatccta tatatatacc ccaatcccca atccccaatc ccc              53


<210>  21
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  21
atcaacactg cacaccagac agcaagatcc tatatata                               38


<210>  22
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' Cl- fluorophore

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  3' Lysine-COOH

<400>  22
atcaacactg ca                                                           12


<210>  23
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (29)..(30)
<223>  First Label

<400>  23
tattgtgtat tgtgtattgt tttatatata taggatcttg ctgtctggtg tgcagtgttg       60

at                                                                      62


<210>  24
<211>  53
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide


<220>
<221>  misc_feature
<222>  (53)..(53)
<223>  3' Second Label

<400>  24
caccagacag caagatccta tatatatacc ccaatcccca atccccaatc ccc              53


