                         SEQUENCE LISTING

<110>  President and Fellows of Harvard College
       Massachusetts Institute of Technology
       Sabeti, Pardis
       Freije, Catherine Amanda
       Metsky, Hayden
       Myhrvold, Cameron
 
<120>  Multiplexing Highly Evolving Viral Variants with Sherlock

<130>  BROD-3820WP

<150>  US 62/767,076
<151>  2018-11-14

<160>  27    

<170>  PatentIn version 3.5

<210>  1
<211>  4
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  1
ucuu                                                                     4


<210>  2
<211>  4
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  2
uuuu                                                                     4


<210>  3
<211>  4
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  3
uauu                                                                     4


<210>  4
<211>  4
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  4
uguu                                                                     4


<210>  5
<211>  25
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  5
gggaacaaag cugaaguacu uaccc                                             25


<210>  6
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  6
gggtagggcg ggttggga                                                     18


<210>  7
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (25)..(25)
<223>  DNA linker - hioMC3-D/

<220>
<221>  misc_feature
<222>  (25)..(25)
<223>  DNA linker = 3ThioMC3-D/

<400>  7
ttataactat tcctaaaaaa aaaaa                                             25


<210>  8
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  DNA linker = /5ThioMC6-D/

<400>  8
aaaaaaaaaa ctcccctaat aacaat                                            26


<210>  9
<211>  45
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  9
ggguaggaau aguuauaauu ucccuuuccc auuguuauua gggag                       45


<210>  10
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Biotin tag = /5Biosg/

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  Iowa black quencher =  /3IAbRQSp/

<400>  10
ucucguacgu uc                                                           12


<210>  11
<211>  24
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  biotin tag = /5Biosg/

<220>
<221>  misc_feature
<222>  (24)..(24)
<223>  Iowa black quencherr = /eIAbRQSp/

<400>  11
ucucguacgu ucucucguac guuc                                              24


<210>  12
<211>  66
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tgtggttggt gtggttggtt catggtcata ttggtttttt tttttttttc caaccacagt
       60

ctctgt

<400>  12
tgtggttggt gtggttggtt catggtcata ttggtttttt tttttttttc caaccacagt       60

ctctgt                                                                  66


<210>  13
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  13
ggttggtagt ctcgaattgc tctctttcac tggcc                                  35


<210>  14
<211>  48
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  14
gaaattaata cgactcacta tagggggttg gttcatggtc atattggt                    48


<210>  15
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  15
gaaattaata cgactcacta tagggggttg gtgtggttgg ttcatggtca tattggt          57


<210>  16
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  16
ggccagtgaa agagagcaat tcgagactac c                                      31


<210>  17
<211>  64
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  17
gauuuagacu accccaaaaa cgaaggggac uaaaacccag ugaaagagag caauucgaga       60

cuac                                                                    64


<210>  18
<211>  64
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  18
gauuuagacu accccaaaaa cgaaggggac uaaaacaaag agagcaauuc gagacuacca       60

acca                                                                    64


<210>  19
<211>  64
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  19
gauuuagacu accccaaaaa cgaaggggac uaaaacagac uaccaaccac agagacugug       60

guug                                                                    64


<210>  20
<211>  106
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  20
gttagatcgc aagcatatca ttgcgcttgc gatctaactg ctgcgccgcc gggaaaatac       60

tgtacggtta gatcgcatag tctcgaattg ctctctttca ctggcc                     106


<210>  21
<211>  71
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  21
gttagatcgc aagcatatca ttgcgcttgc gatctaactg ctgcgccgcc gggaaaatac       60

tgtacggtta g                                                            71


<210>  22
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  22
atcgcatagt ctcgaattgc tctctttcac tggcc                                  35


<210>  23
<211>  50
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  23
gaaattaata cgactcacta tagggatcgc aagcatatca ttgcgcttgc                  50


<210>  24
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  24
ggccagtgaa agagagcaat tcgagactat g                                      31


<210>  25
<211>  64
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  25
gauuuagacu accccaaaaa cgaaggggac uaaaacccag ugaaagagag caauucgaga       60

cuau                                                                    64


<210>  26
<211>  64
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  26
gauuuagacu accccaaaaa cgaaggggac uaaaacagag caauucgaga cuaugcgauc       60

uaac                                                                    64


<210>  27
<211>  64
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  27
gauuuagacu accccaaaaa cgaaggggac uaaaacacua ugcgaucuaa ccguacagua       60

uuuu                                                                    64


