                               SEQUENCE LISTING

<110> MEMORIAL SLOAN-KETTERING CANCER CENTER
 
<120> METHODS FOR IDENTIFYING ANTIGEN-SPECIFIC T CELL RECEPTORS

<130> 072734.0870

<140> PCT/US2019/031743
<141> 2019-05-10

<150> 62/688,084
<151> 2018-06-21

<150> 62/670,407
<151> 2018-05-11

<160> 66    

<170> PatentIn version 3.5

<210> 1
<211> 27
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 1
Arg Ala Lys Arg Ser Gly Ser Gly Ala Thr Asn Phe Ser Leu Leu Lys 
1               5                   10                  15      


Gln Ala Gly Asp Val Glu Glu Asn Pro Gly Pro 
            20                  25          


<210> 2
<211> 81
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 2
agggcaaaga ggagcggatc cggagccacc aatttctctc tgctgaagca ggcaggcgat       60

gtggaggaga acccaggacc t                                                 81


<210> 3
<211> 81
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 3
agggcaaagc ggagcggaag tggcgccacc aatttctccc tgctgaaaca ggccggggat       60

gtcgaggaaa atcccggacc t                                                 81


<210> 4
<211> 4
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 4
Ser Gly Ser Gly 
1               


<210> 5
<211> 65
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polypeptide

<400> 5
His Ala Gly Leu Ser Asn Arg Leu Ala Arg Asp Asn Glu Leu Arg Glu 
1               5                   10                  15      


Asn Asp Lys Glu Gln Leu Lys Ala Ile Ser Thr Arg Asp Pro Leu Ser 
            20                  25                  30          


Glu Ile Thr Glu Gln Glu Lys Asp Phe Leu Trp Ser His Arg His Tyr 
        35                  40                  45              


Cys Val Thr Ile Pro Glu Ile Leu Pro Lys Leu Leu Leu Ser Val Lys 
    50                  55                  60                  


Trp 
65  


<210> 6
<211> 65
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polypeptide

<400> 6
His Ala Gly Leu Ser Asn Arg Leu Ala Arg Asp Asn Glu Leu Arg Glu 
1               5                   10                  15      


Asn Asp Lys Glu Gln Leu Lys Ala Ile Ser Thr Arg Asp Pro Leu Ser 
            20                  25                  30          


Lys Ile Thr Glu Gln Glu Lys Asp Phe Leu Trp Ser His Arg His Tyr 
        35                  40                  45              


Cys Val Thr Ile Pro Glu Ile Leu Pro Lys Leu Leu Leu Ser Val Lys 
    50                  55                  60                  


Trp 
65  


<210> 7
<211> 65
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polypeptide

<400> 7
Leu Ser Asn Arg Leu Ala Arg Asp Asn Glu Leu Arg Glu Asn Asp Lys 
1               5                   10                  15      


Glu Gln Leu Lys Ala Ile Ser Thr Arg Asp Pro Leu Ser Glu Ile Thr 
            20                  25                  30          


Glu Gln Glu Lys Asp Phe Leu Trp Ser His Arg His Tyr Cys Val Thr 
        35                  40                  45              


Ile Pro Glu Ile Leu Pro Lys Leu Leu Leu Ser Val Lys Trp Asn Ser 
    50                  55                  60                  


Arg 
65  


<210> 8
<211> 65
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polypeptide

<400> 8
Leu Ser Asn Arg Leu Ala Arg Asp Asn Glu Leu Arg Glu Asn Asp Lys 
1               5                   10                  15      


Glu Gln Leu Lys Ala Ile Ser Thr Arg Asp Pro Leu Ser Glu Ile Thr 
            20                  25                  30          


Lys Gln Glu Lys Asp Phe Leu Trp Ser His Arg His Tyr Cys Val Thr 
        35                  40                  45              


Ile Pro Glu Ile Leu Pro Lys Leu Leu Leu Ser Val Lys Trp Asn Ser 
    50                  55                  60                  


Arg 
65  


<210> 9
<211> 45
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polypeptide

<400> 9
Lys Thr Leu Ala Leu Asp Lys Thr Glu Gln Glu Ala Leu Glu Tyr Phe 
1               5                   10                  15      


Met Lys Gln Met Asn Asp Ala His His Gly Gly Trp Thr Thr Lys Met 
            20                  25                  30          


Asp Trp Ile Phe His Thr Ile Lys Gln His Ala Leu Asn 
        35                  40                  45  


<210> 10
<211> 45
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polypeptide

<400> 10
Lys Thr Leu Ala Leu Asp Lys Thr Glu Gln Glu Ala Leu Glu Tyr Phe 
1               5                   10                  15      


Met Lys Gln Met Asn Asp Ala Arg His Gly Gly Trp Thr Thr Lys Met 
            20                  25                  30          


Asp Trp Ile Phe His Thr Ile Lys Gln His Ala Leu Asn 
        35                  40                  45  


<210> 11
<211> 45
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polypeptide

<400> 11
Lys Thr Leu Ala Leu Asp Lys Thr Glu Gln Glu Ala Leu Glu Tyr Phe 
1               5                   10                  15      


Met Lys Gln Met Asn Asp Ala Leu His Gly Gly Trp Thr Thr Lys Met 
            20                  25                  30          


Asp Trp Ile Phe His Thr Ile Lys Gln His Ala Leu Asn 
        35                  40                  45  


<210> 12
<211> 25
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 12
Gly His Ser Tyr Thr Thr Ala Glu Glu Leu Ala Gly Ile Gly Ile Leu 
1               5                   10                  15      


Thr Val Ile Leu Gly Val Leu Leu Leu 
            20                  25  


<210> 13
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 13
Cys Ala Val Arg Pro Leu Tyr Gly Gly Ser Tyr Ile Pro Thr Phe 
1               5                   10                  15  


<210> 14
<211> 12
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 14
Cys Ala Val Asn Phe Gly Gly Gly Lys Leu Ile Phe 
1               5                   10          


<210> 15
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 15
Cys Val Leu Gly Gly Gly Ser Ala Arg Gln Leu Thr Phe 
1               5                   10              


<210> 16
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 16
Cys Ala Val Asn Lys Arg Ser Asn Tyr Gln Leu Ile Trp 
1               5                   10              


<210> 17
<211> 12
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 17
Cys Val Val Asn Asp Gly Thr Tyr Lys Tyr Ile Phe 
1               5                   10          


<210> 18
<211> 11
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 18
Cys Ala Ala Ser Met Ile Ala Arg Leu Met Phe 
1               5                   10      


<210> 19
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 19
Cys Ala Met Arg Asp Phe Ser Gly Gly Tyr Asn Lys Leu Ile Phe 
1               5                   10                  15  


<210> 20
<211> 11
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 20
Cys Ala Gly His Pro Leu Asn Asp Met Arg Phe 
1               5                   10      


<210> 21
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 21
Cys Ala Phe Val Arg Asn Asn Asn Ala Arg Leu Met Phe 
1               5                   10              


<210> 22
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 22
Cys Ala Glu Ser Leu Met Asp Thr Gly Arg Arg Ala Leu Thr Phe 
1               5                   10                  15  


<210> 23
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 23
Cys Ala Ser Ser Tyr Val Gly Asn Thr Gly Glu Leu Phe Phe 
1               5                   10                  


<210> 24
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 24
Cys Ala Ser Ser Leu Ser Phe Gly Thr Glu Ala Phe Phe 
1               5                   10              


<210> 25
<211> 12
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 25
Cys Ala Ser Ser Arg Met Asn Thr Glu Ala Phe Phe 
1               5                   10          


<210> 26
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 26
Cys Ala Ser Ser Tyr Phe Gln Gly Ala Ala Glu Ala Phe Phe 
1               5                   10                  


<210> 27
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 27
Cys Ala Ser Ser Pro Lys Gln Gln Tyr Glu Gln Tyr Phe 
1               5                   10              


<210> 28
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 28
Cys Ala Ser Ser Phe Thr Thr Gly Val Gly Thr Glu Ala Phe Phe 
1               5                   10                  15  


<210> 29
<211> 12
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 29
Cys Ala Ser Arg Lys Gln Asn Tyr Gly Tyr Thr Phe 
1               5                   10          


<210> 30
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 30
Cys Ala Ser Ser Glu Asn Gly Gly Val Asp Glu Gln Phe Phe 
1               5                   10                  


<210> 31
<211> 17
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 31
Cys Ala Ser Ser Ser Ala Phe Thr Gly Thr Glu Asp Pro Gly Tyr Thr 
1               5                   10                  15      


Phe 
    


<210> 32
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 32
Cys Ala Ser Ser Glu Trp Thr Ser Gly Asp Asn Glu Gln Phe Phe 
1               5                   10                  15  


<210> 33
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 33
Cys Ala Ser Ser Leu Gly Thr Phe Ser Thr Asp Thr Gln Tyr Phe 
1               5                   10                  15  


<210> 34
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 34
Cys Ala Ser Ser Gln Gly Gly Arg Gly Glu Tyr Glu Ala Phe Phe 
1               5                   10                  15  


<210> 35
<211> 11
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 35
Cys Ala Ser Ser Pro Gly Tyr Glu Gln Phe Phe 
1               5                   10      


<210> 36
<211> 20
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 36
Cys Ala Ser Ser His Pro Leu Gly Gly Gln Gly Asn Thr Trp Gly Asn 
1               5                   10                  15      


Glu Gln Phe Phe 
            20  


<210> 37
<211> 12
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 37
Cys Ala Ser Ser Phe Ser Gly Thr Gly Ala Phe Phe 
1               5                   10          


<210> 38
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 38
Cys Ala Ser Ser Pro Thr Gly Thr Ser Gly Asn Glu Gln Tyr Phe 
1               5                   10                  15  


<210> 39
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 39
Cys Ala Ser Ser Glu Gly His Leu Asn Thr Glu Ala Phe Phe 
1               5                   10                  


<210> 40
<211> 12
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 40
Cys Ala Ser Ser Arg Val Gln Asn Glu Gln Phe Phe 
1               5                   10          


<210> 41
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 41
Cys Ala Ser Ser Phe Ser Gly Thr Pro Pro Gln Pro Gln His Phe 
1               5                   10                  15  


<210> 42
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 42
Cys Ala Ser Ser Leu Gln Gly Tyr Asn Glu Gln Phe Phe 
1               5                   10              


<210> 43
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 43
Cys Ala Ser Ser Ile Pro Gly Lys Glu Thr Gln Tyr Phe 
1               5                   10              


<210> 44
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 44
Cys Ala Ser Ser Thr Thr Leu Thr Gly Ile Lys Asp Thr Phe 
1               5                   10                  


<210> 45
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 45
Cys Ala Ser Ser Tyr Gly Leu Thr Tyr Glu Gln Tyr Phe 
1               5                   10              


<210> 46
<211> 16
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 46
Cys Ala Ser Ser Ser Leu Gly Asp Val Met Asn Thr Glu Ala Phe Phe 
1               5                   10                  15      


<210> 47
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 47
Cys Ala Ser Ser Arg Gly Leu Gln Pro Thr Gln Tyr Phe 
1               5                   10              


<210> 48
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 48
Cys Ala Ser Ser Phe Asn Pro Ser Tyr Glu Gln Tyr Phe 
1               5                   10              


<210> 49
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 49
Cys Ala Val Lys Gly Ser Asp Asp Tyr Lys Leu Ser Phe 
1               5                   10              


<210> 50
<211> 19
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 50
Cys Ala Ser Ser Pro Val Asn Leu Ala Gly Val Ser Arg Ala Asp Thr 
1               5                   10                  15      


Gln Tyr Phe 
            


<210> 51
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 51
Cys Ala Ser Ser Pro Arg Gly Tyr Gln Pro Gln His Phe 
1               5                   10              


<210> 52
<211> 11
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 52
Cys Ala Val Thr Ser Trp Gly Lys Leu Gln Phe 
1               5                   10      


<210> 53
<211> 16
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 53
Cys Ala Ser Ser Pro Pro Glu Ala Gly Leu Asp Thr Glu Ala Phe Phe 
1               5                   10                  15      


<210> 54
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 54
Cys Ala Ser Ser Leu Ser Gly Gly Gly Asp Tyr Gly Tyr Thr Phe 
1               5                   10                  15  


<210> 55
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 55
Cys Ala Ser Gly Gly Ser Gly Asn Thr Gly Lys Leu Ile Phe 
1               5                   10                  


<210> 56
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 56
Cys Ala Ser Ser Leu Gly Gln Phe Asn Tyr Glu Gln Tyr Phe 
1               5                   10                  


<210> 57
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 57
Cys Ala Met Arg Glu Val Leu Asp Asn Thr Asp Lys Leu Ile Phe 
1               5                   10                  15  


<210> 58
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 58
Cys Ser Ala Arg Glu Gln Gly Pro Leu Glu Glu Gln Tyr Phe 
1               5                   10                  


<210> 59
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 59
Cys Ala Ser Ser Phe Gly Thr Ala Thr Tyr Glu Gln Tyr Phe 
1               5                   10                  


<210> 60
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 60
Cys Ala Met Asn Ser Gly Gly Tyr Gln Lys Val Thr Phe 
1               5                   10              


<210> 61
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 61
Cys Ile Val Arg Val Ala Gly Ser Ala Arg Gln Leu Thr Phe 
1               5                   10                  


<210> 62
<211> 15
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 62
Cys Ala Ser Ser Pro Tyr Arg Gln Gly Ser Tyr Gly Tyr Thr Phe 
1               5                   10                  15  


<210> 63
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 63
Cys Ala Ala Ser Ile Pro Gly Thr Ala Ser Lys Leu Thr Phe 
1               5                   10                  


<210> 64
<211> 13
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 64
Cys Ala Ala Ser Thr Gly Asn Phe Asn Lys Phe Tyr Phe 
1               5                   10              


<210> 65
<211> 14
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 65
Cys Ala Ser Asn Arg Gln Gly Thr Val Thr Glu Ala Phe Phe 
1               5                   10                  


<210> 66
<211> 25
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 66
Ile Leu Gly Asp Pro Lys Lys Leu Leu Thr Gln His Phe Val Gln Glu 
1               5                   10                  15      


Asn Tyr Leu Glu Tyr Arg Gln Val Pro 
            20                  25  


