                         SEQUENCE LISTING

<110>  Iridia, Inc.
 
<120>  SYSTEMS AND METHODS FOR WRITING, READING, AND CONTROLLING DATA 
       STORED IN A POLYMER

<130>  DNA-01-CIP2-PCT

<160>  35    

<170>  PatentIn version 3.5

<210>  1
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Donor Oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(30)
<223>  n is a, c, g, t, or absent

<220>
<221>  misc_feature
<222>  (8)..(19)
<223>  n (located from base position 8 to 19) refers to Informational 
       Sequence A or B, which can be from 3 to 12 nucleotides

<400>  1
cgaagggnnn nnnnnnnnng tcgacnnnnn                                        30


<210>  2
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Topoisomerase Ligation Site


<220>
<221>  misc_feature
<222>  (1)..(25)
<223>  n is a, c, g, t, or absent

<220>
<221>  misc_feature
<222>  (8)..(19)
<223>  n (located from base position 8 to 19) refers to Informational 
       Sequence A or B, which can be from 3 to 12 nucleotides

<400>  2
cgaagggnnn nnnnnnnnng tcgac                                             25


<210>  3
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  n is a, c, g, t, or absent

<220>
<221>  misc_feature
<222>  (8)..(19)
<223>  n (located from base position 8 to 19) refers to Informational 
       Sequence A or B, which can be from 3 to 12 nucleotides

<400>  3
cgaagggnnn nnnnnnnnng t                                                 21


<210>  4
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BAB (synthesized sequence)

<400>  4
cgatagtcta ggcactgttt gctgcgccct tgtccgtgtc gcccttatct acttaagaga       60

tcatacagca ttgcgagtac g                                                 81


<210>  5
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  B2 (synthesized sequence)

<400>  5
atctacttaa gagatcatac agcattgcga gtacg                                  35


<210>  6
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TA2 (synthesized sequence)

<400>  6
agggcgacac ggacagtttg aatcataccg                                        30


<210>  7
<211>  71
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TA3b (synthesized sequence)

<400>  7
aacttagtat gacggtatga ttcaaactgt ccgtgtcgcc cttattccga tagtgactac       60

agcggcatga g                                                            71


<210>  8
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TB2 (synthesized sequence)

<400>  8
agggcgcagc aaacagtgcc tagactatcg                                        30


<210>  9
<211>  71
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  TB3b (synthesized sequence)

<400>  9
aacttagtat gacgatagtc taggcactgt ttgctgcgcc cttattccga tagtgactac       60

agcggcatga g                                                            71


<210>  10
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FP1 (synthesized sequence)

<400>  10
cacgtactcg caatgct                                                      17


<210>  11
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FP2 (synthesized sequence)

<400>  11
cggtatgatt caaactgtcc g                                                 21


<210>  12
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FP3 (synthesized sequence)

<400>  12
gcccttgtcc gtgtc                                                        15


<210>  13
<211>  50
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NAT1 (synthesized sequence)

<400>  13
cacgtcaggc gtatccatcc cttcacgtac tcgcaatgct gtatggcgat                  50


<210>  14
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NAT9x (synthesized sequence)

<400>  14
atcgccatac agcattgcga g                                                 21


<210>  15
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NAT9 (synthesized sequence)

<400>  15
acgtgaaggg atggatacgc ctgacgtg                                          28


<210>  16
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Nat9Acc (synthesized sequence)

<400>  16
cacgtagcag caaacagtgc ctagactatc g                                      31


<210>  17
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Nat1P (synthesized sequence)

<400>  17
cacgtcaggc gtatccatcc                                                   20


<210>  18
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FP4 (synthesized sequence)

<400>  18
cgatagtcta ggcactgttt g                                                 21


<210>  19
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NAT9c (synthesized sequence)

<400>  19
gtgcagtccg cataggtagg gaagtgca                                          28


<210>  20
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  o1 (synthesized sequence)

<400>  20
ctggaacggt aaattcagag actgcgcttt ccattctggc tttaatg                     47


<210>  21
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  o3 (synthesized sequence)

<400>  21
ggaaagcgca gtctctgaat ttac                                              24


<210>  22
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  N1 (synthesized sequence)

<400>  22
cttactggaa cggctatcga tatcgcagca ggacaga                                37


<210>  23
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  N2 (synthesized sequence)

<400>  23
gtcctgctgc gatatcgata gccgttccag taag                                   34


<210>  24
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide

<400>  24
ctggaacggt aaattcagag actgcgcttt ccattctggc tttaatg                     47


<210>  25
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide

<400>  25
catttaagtc tctgacgcga aagg                                              24


<210>  26
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide

<400>  26
gcgcacggtc tcccggcgta tccatccctt                                        30


<210>  27
<211>  84
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide

<400>  27
cggcctcgca atgctgtatg gcgatggaat tccacagtca gcaggagcgt tacgacatac       60

cgctacctta aggtgtcagt cgtc                                              84


<210>  28
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide

<400>  28
gcgcacggtc tcccggcgta tccatccctt cggcctcgca atgctgtatg gcgatggaat       60

tccacagtca gcag                                                         74


<210>  29
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide

<400>  29
cggcgtatcc atcccttcgg cctcgcaatg ctgtatggcg atggaattcc acagtcagca       60

g                                                                       61


<210>  30
<211>  91
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligonucleotide

<400>  30
gcgcacggtc tcccggcgta tccatccctt cggcgtatcc atcccttcgg cctcgcaatg       60

ctgtatggcg atggaattcc acagtcagca g                                      91


<210>  31
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  7F-T

<400>  31
cggcagatct accctt                                                       16


<210>  32
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Topo

<400>  32
cggcagatct accctt                                                       16


<210>  33
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  7F-B1

<400>  33
gccgaagggt agatct                                                       16


<210>  34
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  7F-B2

<400>  34
caagtacgtg a                                                            11


<210>  35
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NAT9cI


<220>
<221>  modified_base
<222>  (1)..(1)
<223>  I (located before base position 1) refers to inosine, which 
       consists of 5 inosine bases, which pair with base position 1

<400>  35
aagggatgga tacgcctgac gtg                                               23


