﻿               SEQUENCE LISTING

<110> SANOFI PASTEUR

<120> LIVE-ATTENUATED YELLOW FEVER VIRUS STRAIN ADAPTED TO GROW ON VERO CELLS AND VACCINE COMPOSITION COMPRISING THE SAME

<130> PM1801-WO-PCT

<160> 18

<170> BiSSAP 1.3.6

<210> 1
<211> 10862
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV 17D204 strain

<400> 1
aguaaauccu gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa       60

acacauuugg auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau      120

gucuggucgu aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg      180

cuccuuguca aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc      240

aagagguguu caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau      300

cacagcccac cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu      360

aaggaaaguc aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg      420

uucccaugau guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg      480

agugaccuug gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg      540

gaaaacauuc ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug      600

gugcccagac ucaauggaau acaacugucc caaucucagu ccaagagagg agccagauga      660

cauugauugc uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc      720

agcaggcagg ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg      780

uuugaagacc cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa      840

gauugagaga ugguucguga ggaaccccuu uuuugcagug acggcucuga ccauugccua      900

ccuuguggga agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg      960

uccggccuac ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca     1020

uggaggaacu uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc     1080

ugacaagccu ucauuggaca ucucacuaga gacaguagcc auugauagac cugcugaggu     1140

gaggaaagug uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag     1200

cacuggagag gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua     1260

uucugauaga ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug     1320

cgccaaauuc acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca     1380

guaugucauc agagcacaau ugcauguagg ggccaagcag gaaaauugga auaccgacau     1440

uaagacucuc aaguuugaug cccugucagg cucccaggaa gucgaguuca uuggguaugg     1500

aaaagcuaca cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacaucgc     1560

ugagauggaa acagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc     1620

auggcagagu ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc     1680

uccgcaugcc gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac     1740

agcucuuacu ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu     1800

acauggugga cauguuucuu gcagagugaa auugucagcu uugacacuca aggggacauc     1860

cuacaaaaua ugcacugaca aaauguuuuu ugucaagaac ccaacugaca cuggccaugg     1920

cacuguugug augcagguga aagugucaaa aggagccccc ugcaggauuc cagugauagu     1980

agcugaugau cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc     2040

cucaaccaau gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau     2100

uaucguuggg agaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau     2160

aggaaaguug uucacucaga ccaugaaagg cguggaacgc cuggccguca ugggagacac     2220

cgccugggau uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac     2280

gguguuuggc ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau     2340

caugggggcg guacuuauau ggguuggcau caacacaaga aacaugacaa uguccaugag     2400

caugaucuug guaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg     2460

augcgccauc aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag     2520

agacucugau gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc     2580

aucaauagug aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu     2640

ugagcaugag auguggagaa gcagggcaga ugagaucaau gccauuuuug aggaaaacga     2700

gguggacauu ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc     2760

auuuuccaga auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu     2820

guucucccca gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug     2880

cccguuuuca aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu     2940

caccacacgc guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau     3000

cuugggugca gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg     3060

aagucaugaa guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga     3120

gugugagugg ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau     3180

gccgagauca aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca     3240

gacgaacgga ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac     3300

uagcgugauc auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga     3360

uagcgggaaa guuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu     3420

ccaugguagu gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag     3480

ccaucuggug cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu     3540

gagcaugaug auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaauguu     3600

gguuggagga guagugcucu ugggagcaau gcuggucggg caaguaacuc uccuugauuu     3660

gcugaaacuc acaguggcug ugggauugca uuuccaugag augaacaaug gaggagacgc     3720

cauguauaug gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg     3780

gcucaggacc cuauggagcc cucgggaacg ccuugugcug acccuaggag cagccauggu     3840

ggagauugcc uuggguggcg ugaugggcgg ccuguggaag uaucuaaaug caguuucucu     3900

cugcauccug acaauaaaug cuguugcuuc uaggaaagca ucaaauacca ucuugccccu     3960

cauggcucug uugacaccug ucacuauggc ugaggugaga cuugccgcaa uguucuuuug     4020

ugccgugguu aucauagggg uccuucacca gaauuucaag gacaccucca ugcagaagac     4080

uauaccucug guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg     4140

ccugugugca uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc     4200

acucgcagca gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa     4260

cuuccuuggu ccgauugcag uuggaggacu ccugaugaug cugguuagcg uggcugggag     4320

gguggauggg cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau     4380

cagcgggagu uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu     4440

uucugaagag aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc     4500

ugcccuccau ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg     4560

agcuaggaga aguggggaug ucuuguggga uauucccacu ccuaagauca ucgaggaaug     4620

ugaacaucug gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca     4680

gcgaggagug ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg     4740

agcuuuccuu gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga     4800

ccuugucgcc uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu     4860

ccaguugauc gcggcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu     4920

guucaaagug aggaaugggg gagaaaucgg ggcugucgcu cuugacuauc cgaguggcac     4980

uucaggaucu ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau     5040

ccuugucggu gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg     5100

aaaggaggag cuccaagaga ucccgacaau gcuaaagaaa ggaaugacaa cuguccuuga     5160

uuuucauccu ggagcuggga agacaagacg uuuccuccca cagaucuugg ccgagugcgc     5220

acggagacgc uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa     5280

ggaggcuuuu cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag     5340

cgggagagaa gucauugaug ccaugugcca ugccacccua acuuacagga uguuggaacc     5400

aacuaggguu guuaacuggg aagugaucau uauggaugaa gcccauuuuu uggauccagc     5460

uagcauagcc gcuagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau     5520

cuugaugaca gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau     5580

agaagauguu caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu     5640

agcugacaaa aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc     5700

ugccucuuug cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag     5760

agaauacccc acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga     5820

aaugggagcc aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu     5880

gcuuguggau gaagggagga agguggcaau aaaagggcca cuucguaucu ccgcauccuc     5940

ugcugcucaa aggagggggc gcauugggag aaaucccaac agagauggag acucauacua     6000

cuauucugag ccuacaagug aaaauaaugc ccaccacguc ugcugguugg aggccucaau     6060

gcucuuggac aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg     6120

aacuaaaaca ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu     6180

cagagaacua gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc     6240

ugguuugaag acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu     6300

gaaugacagc ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg     6360

cccaaggugg ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa     6420

guuugcugaa gguaggaggg gagcugcuga agugcuaguu gugcugagug aacucccuga     6480

uuuccuggcu aaaaaaggug gagaggcaau ggauaccauc aguguguucc uccacucuga     6540

ggaaggcucu agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu     6600

caugcuguuu auacuggcug gacuacugac aucgggaaug gucaucuuuu ucaugucucc     6660

caaaggcauc aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau     6720

guuccuugga ggcgucaaac ccacucacau cuccuauguc augcucauau ucuuuguccu     6780

gauggugguu gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc     6840

auaccucauu auuggcaucc ugacgcuggu uucagcggug gcagccaacg agcuaggcau     6900

gcuggagaaa accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc     6960

acccuggagu uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg     7020

cauuguuaca augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu     7080

gucucugucu ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc     7140

auucaugaag augaauaucu cggucauaau gcugcugguc aguggcugga auucaauaac     7200

agugaugccu cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc     7260

uggaaucaaa gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccga     7320

gaacccugug guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc     7380

ccuuuaugag aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc     7440

caugugcaga acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugccuuagg     7500

gccgcucaua gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac     7560

aggagucaug agggggaauc acuaugcuuu ugugggaguc auguacaauc uauggaagau     7620

gaaaacugga cgccggggga gcgcgaaugg aaaaacuuug ggugaagucu ggaagaggga     7680

acugaaucug uuggacaagc gacaguuuga guuguauaaa aggaccgaca uuguggaggu     7740

ggaucgugau acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu     7800

cuccaggggg accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg     7860

uagggugauu gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa     7920

ggaagugagu ggggucaaag gauuuacucu uggaagagac ggccaugaga aacccaugaa     7980

ugugcaaagu cugggaugga acaucaucac cuucaaggac aaaacugaua uccaccgccu     8040

agaaccagug aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu     8100

cacagagggg gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg     8160

gguugacaac uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu     8220

ggaauugcuc caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc     8280

cacucaugaa auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca     8340

aacaucccgc cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc     8400

ugacgucauc cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa     8460

agaggccaua gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua     8520

ugacaaugac aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc     8580

aggaagugcg gcgagcaugg uaaauggugu uauuaaaauu cugacauauc caugggacag     8640

gauagaggag gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu     8700

guuuaaagaa aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau     8760

gaaaguuguc aacagguggc uguuccgcca ccuggccaga gaaaagaacc ccagacugug     8820

cacaaaggaa gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga     8880

agaacaagaa caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu     8940

gguggaugaa gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau     9000

gauggggaaa agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau     9060

augguauaug uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga     9120

ggaccauugg gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua     9180

ccuaggauau gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga     9240

caccgcugga ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu     9300

gaacuacaug agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa     9360

gaacaaagug gugaaagugu ugagaccagc cccaggaggg aaagccuaca uggaugucau     9420

aagucgacga gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac     9480

caacuugaaa guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca     9540

uguucaagau ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg     9600

augugacaga cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga     9660

ugacagguuc ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau     9720

aucugaaugg cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca     9780

ccacuuccau gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca     9840

ggacgagcuc auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac     9900

agcuugccuc agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga     9960

caugaggcua cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg    10020

acgcacaaca uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga    10080

gguguggaac agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa    10140

aaaauggaga gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau    10200

uggaaugacc aauagggcca ccugggccuc ccacauccau uuagucaucc aucguauccg    10260

aacgcugauu ggacaggaga aauacacuga cuaccuaaca gucauggaca gguauucugu    10320

ggaugcugac cugcaacugg gugagcuuau cugaaacacc aucuaacagg aauaaccggg    10380

auacaaacca cggguggaga accggacucc ccacaaccug aaaccgggau auaaaccacg    10440

gcuggagaac cgggcuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug    10500

gagaaccgga cuccacacau ugagacagaa gaaguuguca gcccagaacc ccacacgagu    10560

uuugccacug cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa    10620

aaaccugguu ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc    10680

cucccacgug gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa    10740

auagugggac cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccaga    10800

ggucugugag cacaguuugc ucaagaauaa gcagaccuuu ggaugacaaa cacaaaacca    10860

cu                                                                   10862


<210> 2
<211> 10862
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV YF-Vax® strain

<400> 2
aguaaauccu gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa       60

acacauuugg auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau      120

gucuggucgu aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg      180

cuccuuguca aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc      240

aagagguguu caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau      300

cacagcccac cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu      360

aaggaaaguc aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg      420

uucccaugau guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg      480

agugaccuug gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg      540

gaaaacauuc ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug      600

gugcccagac ucaauggaau acaacugucc caaucucagu ccaagagagg agccagauga      660

cauugauugc uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc      720

agcaggcagg ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg      780

uuugaagacc cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa      840

gauugagaga ugguucguga ggaaccccuu uuuugcagug acggcucuga ccauugccua      900

ccuuguggga agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg      960

uccggccuac ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca     1020

uggaggaacu uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc     1080

ugacaagccu ucauuggaca ucucacuaga gacaguagcc auugauagac cugcugaggu     1140

gaggaaagug uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag     1200

cacuggagag gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua     1260

uucugauaga ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug     1320

cgccaaauuc acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca     1380

guaugucauc agagcacaau ugcauguagg ggccaagcag gaaaauugga cuaccgacau     1440

uaagacucuc aaguuugaug cccugucagg cucccaggaa gucgaguuca uuggguaugg     1500

aaaagcuaca cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacaucgc     1560

ugagauggaa acagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc     1620

auggcagagu ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc     1680

uccgcaugcc gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac     1740

agcucuuacu ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu     1800

acauggugga cauguuucuu gcagagugaa auugucagcu uugacacuca aggggacauc     1860

cuacaaaaua ugcacugaca aaauguuuuu ugucaagaac ccaacugaca cuggccaugg     1920

cacuguugug augcagguga aagugucaaa aggagccccc ugcaggauuc cagugauagu     1980

agcugaugau cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc     2040

cucaaccaau gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau     2100

uaucguuggg agaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau     2160

aggaaaguug uucacucaga ccaugaaagg cguggaacgc cuggccguca ugggagacac     2220

cgccugggau uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac     2280

gguguuuggc ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau     2340

caugggggcg guacuuauau ggguuggcau caacacaaga aacaugacaa uguccaugag     2400

caugaucuug guaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg     2460

augcgccauc aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag     2520

agacucugau gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc     2580

aucaauagug aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu     2640

ugagcaugag auguggagaa gcagggcaga ugagaucaau gccauuuuug aggaaaacga     2700

gguggacauu ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc     2760

auuuuccaga auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu     2820

guucucccca gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug     2880

cccguuuuca aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu     2940

caccacacgc guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau     3000

cuugggugca gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg     3060

aagucaugaa guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga     3120

gugugagugg ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau     3180

gccgagauca aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca     3240

gacgaacgga ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac     3300

uagcgugauc auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga     3360

uagcgggaaa guuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu     3420

ccaugguagu gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag     3480

ccaucuggug cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu     3540

gagcaugaug auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaauguu     3600

gguuggagga guagugcucu ugggagcaau gcuggucggg caaguaacuc uccuugauuu     3660

gcugaaacuc acaguggcug ugggauugca uuuccaugag augaacaaug gaggagacgc     3720

cauguauaug gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg     3780

gcucaggacc cuauggagcc cucgggaacg ccuugugcug acccuaggag cagccauggu     3840

ggagauugcc uuggguggcg ugaugggcgg ccuguggaag uaucuaaaug caguuucucu     3900

cugcauccug acaauaaaug cuguugcuuc uaggaaagca ucaaauacca ucuugccccu     3960

cauggcucug uugacaccug ucacuauggc ugaggugaga cuugccgcaa uguucuuuug     4020

ugccgugguu aucauagggg uccuucacca gaauuucaag gacaccucca ugcagaagac     4080

uauaccucug guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg     4140

ccugugugca uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc     4200

acucgcagca gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa     4260

cuuccuuggu ccgauugcag uuggaggacu ccugaugaug cugguuagcg uggcugggag     4320

gguggauggg cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau     4380

cagcgggagu uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu     4440

uucugaagag aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc     4500

ugcccuccau ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg     4560

agcuaggaga aguggggaug ucuuguggga uauucccacu ccuaagauca ucgaggaaug     4620

ugaacaucug gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca     4680

gcgaggagug ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg     4740

agcuuuccuu gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga     4800

ccuugucgcc uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu     4860

ccaguugauc gcggcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu     4920

guucaaagug aggaaugggg gagaaaucgg ggcugucgcu cuugacuauc cgaguggcac     4980

uucaggaucu ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau     5040

ccuugucggu gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg     5100

aaaggaggag cuccaagaga ucccgacaau gcuaaagaaa ggaaugacaa cuguccuuga     5160

uuuucauccu ggagcuggga agacaagacg uuuccuccca cagaucuugg ccgagugcgc     5220

acggagacgc uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa     5280

ggaggcuuuu cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag     5340

cgggagagaa gucauugaug cuaugugcca ugccacccua acuuacagga uguuggaacc     5400

aacuaggguu guuaacuggg aagugaucau uauggaugaa gcccauuuuu uggauccagc     5460

uagcauagcc gcuagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau     5520

cuugaugaca gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau     5580

agaagauguu caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu     5640

ggcugacaaa aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc     5700

ugccucuuug cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag     5760

agaauacccc acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga     5820

aaugggagcc aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu     5880

gcuuguggau gaagggagga agguggcaau aaaagggcca cuucguaucu ccgcauccuc     5940

ugcugcucaa aggagggggc gcauugggag aaaucccaac agagauggag acucauacua     6000

cuauucugag ccuacaagug aaaauaaugc ccaccacguc ugcugguugg aggccucaau     6060

gcucuuggac aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg     6120

aacuaaaaca ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu     6180

cagagaacua gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc     6240

ugguuugaag acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu     6300

gaaugacagc ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg     6360

cccaaggugg ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa     6420

guuugcugaa gguaggaggg gagcugcuga agugcuaguu gugcugagug aacucccuga     6480

uuuccuggcu aaaaaaggug gagaggcaau ggauaccauc aguguguuuc uccacucuga     6540

ggaaggcucu agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu     6600

caugcuguuu auacuggcug gacuacugac aucgggaaug gucaucuuuu ucaugucucc     6660

caaaggcauc aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau     6720

guuccuugga ggcgucaaac ccacucacau cuccuauauc augcucauau ucuuuguccu     6780

gauggugguu gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc     6840

auaccucauu auuggcaucc ugacgcuggu uucagcggug gcagccaacg agcuaggcau     6900

gcuggagaaa accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc     6960

acccuggagu uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg     7020

cauuguuaca augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu     7080

gucucugucu ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc     7140

auucaugaag augaauaucu cggucauaau gcugcugguc aguggcugga auucaauaac     7200

agugaugccu cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc     7260

uggaaucaaa gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccaa     7320

gaacccugug guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc     7380

ccuuuaugag aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc     7440

caugugcaga acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugcccuagg     7500

gccgcucaua gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac     7560

aggagucaug agggggaauc acuaugcuuu ugugggaguc auguacaauc uauggaagau     7620

gaaaacugga cgccggggga gcgcgaaugg aaaaacuuug ggugaagucu ggaagaggga     7680

acugaaucug uuggacaagc gacaguuuga guuguauaaa aggaccgaca uuguggaggu     7740

ggaucgugau acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu     7800

cuccaggggg accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg     7860

uagggugauu gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa     7920

ggaagugagu ggggucaaag gauuuacucu uggaagagac ggccaugaga aacccaugaa     7980

ugugcaaagu cugggaugga acaucaucac cuucaaggac aaaacugaua uccaccgccu     8040

agaaccagug aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu     8100

cacagagggg gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg     8160

gguugacaac uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu     8220

ggaauugcuc caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc     8280

cacucaugaa auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca     8340

aacaucccgc cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc     8400

ugacgucauc cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa     8460

agaggccaua gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua     8520

ugacaaugac aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc     8580

aggaagugcg gcgagcaugg uaaauggugu uauuaaaauu cugacauauc caugggacag     8640

gauagaggag gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu     8700

guuuaaagaa aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau     8760

gaaaguuguc aacagguggc uguuccgcca ccuggccaga gaaaagaacc ccagacugug     8820

cacaaaggaa gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga     8880

agaacaagaa caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu     8940

gguggaugaa gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau     9000

gauggggaaa agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau     9060

augguauaug uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga     9120

ggaccauugg gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua     9180

ccuaggauau gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga     9240

caccgcugga ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu     9300

gaacuacaug agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa     9360

gaacaaagug gugaaagugu ugagaccagc cccaggaggg aaagccuaca uggaugucau     9420

aagucgacga gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac     9480

caacuugaaa guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca     9540

uguucaagau ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg     9600

auguaacaga cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga     9660

ugacagguuc ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau     9720

aucugaaugg cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca     9780

ccacuuccau gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca     9840

ggacgagcuc auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac     9900

agcuugccuc agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga     9960

caugaggcua cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg    10020

acgcacaaca uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga    10080

gguguggaac agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa    10140

aaaauggaga gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau    10200

uggaaugacc aauagggcca ccugggccuc ccacauccau uuggucaucc aucguauccg    10260

aacgcugauu ggacaggaga aauacacuga cuaccuaaca gucauggaca gguauucugu    10320

ggaugcugac cugcaacugg gugagcuuau cugaaacacc aucuaacagg aauaaccggg    10380

auacaaacca cggguggaga accggacucc ccacaaccug aaaccgggau auaaaccacg    10440

gcuggagaac cggacuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug    10500

gagaaccgga cuccacacau ugagacagaa gaaguuguca gcccagaacc ccacacgagu    10560

uuugccacug cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa    10620

aaaccugguu ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc    10680

cucccacgug gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa    10740

auagugggac cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccaga    10800

ggucugugag cacaguuugc ucaagaauaa gcagaccuuu ggaugacaaa cacaaaacca    10860

cu                                                                   10862


<210> 3
<211> 10862
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV Stamaril® strain

<400> 3
aguaaauccu gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa       60

acacauuugg auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau      120

gucuggucgu aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg      180

cuccuuguca aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc      240

aagagguguu caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau      300

cacagcccac cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu      360

aaggaaaguc aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg      420

uucccaugau guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg      480

agugaccuug gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg      540

gaaaacauuc ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug      600

gugcccagac ucaauggaau acaacugucc caaucucagu ccaagagagg agccagauga      660

cauugauugc uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc      720

agcaggcagg ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg      780

uuugaagacc cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa      840

gauugagaga ugguucguga ggaaccccuu uuuugcagug acggcucuga ccauugccua      900

ccuuguggga agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg      960

uccggccuac ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca     1020

uggaggaacu uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc     1080

ugacaagccu ucauuggaca ucucacuaga gacaguagcc auugauagac cugcugaggu     1140

gaggaaagug uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag     1200

cacuggagag gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua     1260

uucugauaga ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug     1320

cgccaaauuc acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca     1380

guaugucauc agagcacaau ugcauguagg ggccaagcag gaaaauugga auaccgacau     1440

uaagacucuc aaguuugaug cccugucagg cucccaggaa gucgaguuca uuggguaugg     1500

aaaagcuaca cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacaucgc     1560

ugagauggaa acagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc     1620

auggcagagu ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc     1680

uccgcaugcc gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac     1740

agcucuuacu ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu     1800

acauggugga cauguuucuu gcagagugaa auugucagcu uugacacuca aggggacauc     1860

cuacaaaaua ugcacugaca aaauguuuuu ugucaagaac ccaacugaca cuggccaugg     1920

cacuguugug augcagguga aagugucaaa aggagccccc ugcaggauuc cagugauagu     1980

agcugaugau cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc     2040

cucaaccaau gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau     2100

uaucguuggg agaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau     2160

aggaaaguug uucacucaga ccaugaaagg cguggaacgc cuggccguca ugggagacac     2220

cgccugggau uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac     2280

gguguuuggc ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau     2340

caugggggcg guacuuauau ggguuggcau caacacaaga aacaugacaa uguccaugag     2400

caugaucuug guaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg     2460

augcgccauc aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag     2520

agacucugau gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc     2580

aucaauagug aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu     2640

ugagcaugag auguggagaa gcagggcaga ugagaucaau gccauuuuug aggaaaacga     2700

gguggacauu ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc     2760

auuuuccaga auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu     2820

guucucccca gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug     2880

cccguuuuca aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu     2940

caccacacgc guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau     3000

cuugggugca gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg     3060

aagucaugaa guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga     3120

gugugagugg ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau     3180

gccgagauca aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca     3240

gacgaacgga ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac     3300

uagcgugauc auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga     3360

uagcgggaaa guuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu     3420

ccaugguagu gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag     3480

ccaucuggug cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu     3540

gagcaugaug auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaauguu     3600

gguuggagga guagugcucu ugggagcaau gcuggucggg caaguaacuc uccuugauuu     3660

gcugaaacuc acaguggcug ugggauugca uuuccaugag augaacaaug gaggagacgc     3720

cauguauaug gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg     3780

gcucaggacc cuauggagcc cucgggaacg ccuugugcug acccuaggag cagccauggu     3840

ggagauugcc uuggguggcg ugaugggcgg ccuguggaag uaucuaaaug caguuucucu     3900

cugcauccug acaauaaaug cuguugcuuc uaggaaagca ucaaauacca ucuugccccu     3960

cauggcucug uugacaccug ucacuauggc ugaggugaga cuugccgcaa uguucuuuug     4020

ugccgugguu aucauagggg uccuucacca gaacuucaag gacaccucca ugcagaagac     4080

uauaccucug guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg     4140

ccugugugca uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc     4200

acucgcagca gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa     4260

cuuccuuggu ccgauugcag uuggaggacu ccugaugaug cugguuagcg uggcugggag     4320

gguggauggg cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau     4380

cagcgggagu uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu     4440

uucugaagag aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc     4500

ugcccuccau ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg     4560

agcuaggaga aguggggaug ucuuguggga uauucccacu ccuaagauca ucgaggaaug     4620

ugaacaucug gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca     4680

gcgaggagug ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg     4740

agcuuuccuu gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga     4800

ccuugucgcc uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu     4860

ccaguugauc gcggcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu     4920

guucaaagug aggaaugggg gagaaaucgg ggcugucgcu cuugacuauc cgaguggcac     4980

uucaggaucu ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau     5040

ccuugucggu gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg     5100

aaaggaggag cuccaagaga ucccgacaau gcuaaagaaa ggaaugacaa cuguccuuga     5160

uuuucauccu ggagcuggga agacaagacg uuuccuccca cagaucuugg ccgagugcgc     5220

acggagacgc uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa     5280

ggaggcuuuu cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag     5340

cgggagagaa gucauugaug ccaugugcca ugccacccua acuuacagga uguuggaacc     5400

aacuaggguu guuaacuggg aagugaucau uauggaugaa gcccauuuuu uggauccagc     5460

uagcauagcc gcuagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau     5520

cuugaugaca gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau     5580

agaagauguu caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu     5640

ggcugacaaa aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc     5700

ugccucuuug cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag     5760

agaauacccc acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga     5820

aaugggagcc aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu     5880

gcuuguggau gaagggagga agguggcaau aaaagggcca cuucguaucu ccgcauccuc     5940

ugcugcucaa aggagggggc gcauugggag aaaucccaac agagauggag acucauacua     6000

cuauucugag ccuacaagug aaaauaaugc ccaccacguc ugcugguugg aggccucaau     6060

gcucuuggac aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg     6120

aacuaaaaca ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu     6180

cagagaacua gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc     6240

ugguuugaag acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu     6300

gaaugacagc ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg     6360

cccaaggugg ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa     6420

guuugcugaa gguaggaggg gagcugcuga agugcuaguu gugcugagug aacucccuga     6480

uuuccuggcu aaaaaaggug gagaggcaau ggauaccauc aguguguuuc uccacucuga     6540

ggaaggcucu agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu     6600

caugcuguuu auacuggcug gacuacugac aucgggaaug gucaucuuuu ucaugucucc     6660

caaaggcauc aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau     6720

guuccuugga ggcgucaaac ccacucacau cuccuauauc augcucauau ucuuuguccu     6780

gauggugguu gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc     6840

auaccucauu auuggcaucc ugacgcuggu uucagcggug gcagccaacg agcuaggcau     6900

gcuggagaaa accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc     6960

acccuggagu uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg     7020

cauuguuaca augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu     7080

gucucugucu ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc     7140

auucaugaag augaauaucu cggucauaau gcugcugguc aguggcugga auucaauaac     7200

agugaugccu cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc     7260

uggaaucaaa gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccaa     7320

gaacccugug guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc     7380

ccuuuaugag aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc     7440

caugugcaga acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugccuuagg     7500

gccgcucaua gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac     7560

aggagucaug agggggaauc acuaugcuuu ugugggaguc auguacaauc uauggaagau     7620

gaaaacugga cgccggggga gcgcgaaugg aaaaacuuug ggugaagucu ggaagaggga     7680

acugaaucug uuggacaagc gacaguuuga guuguauaaa aggaccgaca uuguggaggu     7740

ggaucgugau acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu     7800

cuccaggggg accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg     7860

uagggugauu gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa     7920

ggaagugagu ggggucaaag gauuuacucu uggaagagac ggccaugaga aacccaugaa     7980

ugugcaaagu cugggaugga acaucaucac cuucaaggac aaaacugaua uccaccgccu     8040

agaaccagug aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu     8100

cacagagggg gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg     8160

gguugacaac uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu     8220

ggaauugcuc caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc     8280

cacucaugaa auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca     8340

aacaucccgc cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc     8400

ugacgucauc cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa     8460

agaggccaua gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua     8520

ugacaaugac aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc     8580

aggaagugcg gcgagcaugg uaaauggugu uauuaaaauu cugacauauc caugggacag     8640

gauagaggag gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu     8700

guuuaaagaa aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau     8760

gaaaguuguc aacagguggc uguuccgcca ccuggccaga gaaaagaacc ccagacugug     8820

cacaaaggaa gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga     8880

agaacaagaa caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu     8940

gguggaugaa gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau     9000

gauggggaaa agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau     9060

augguauaug uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga     9120

ggaccauugg gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua     9180

ccuaggauau gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga     9240

caccgcugga ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu     9300

gaacuacaug agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa     9360

gaacaaagug gugaaagugu ugagaccagc cccaggaggg aaagccuaca uggaugucau     9420

aagucgacga gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac     9480

caacuugaaa guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca     9540

uguucaagau ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg     9600

auguaacaga cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga     9660

ugacagguuc ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau     9720

aucugaaugg cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca     9780

ccacuuccau gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca     9840

ggacgagcuc auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac     9900

agcuugccuc agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga     9960

caugaggcua cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg    10020

acgcacaaca uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga    10080

gguguggaac agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa    10140

aaaauggaga gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau    10200

uggaaugacc aauagggcca ccugggccuc ccacauccau uuggucaucc aucguauccg    10260

aacgcugauu ggacaggaga aauacacuga cuaccuaaca gucauggaca gguauucugu    10320

ggaugcugac cugcaacugg gugagcuuau cugaaacacc aucuaacagg aauaaccggg    10380

auacaaacca cggguggaga accggacucc ccacaaccug aaaccgggau auaaaccacg    10440

gcuggagaac cggacuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug    10500

gagaaccgga cuccacacau ugagacagaa gaaguuguca gcccagaacc ccacacgagu    10560

uuugccacug cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa    10620

aaaccugguu ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc    10680

cucccacgug gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa    10740

auagugggac cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccaga    10800

ggucugugag cacaguuugc ucaagaauaa gcagaccuuu ggaugacaaa cacaaaacca    10860

cu                                                                   10862


<210> 4
<211> 10862
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV 17D-213 strain

<400> 4
aguaaauccu gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa       60

acacauuugg auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau      120

gucuggucgu aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg      180

cuccuuguca aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc      240

aagagguguu caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau      300

cacagcccac cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu      360

aaggaaaguc aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg      420

uucccaugau guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg      480

agugaccuug gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg      540

gaaaacauuc ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug      600

gugcccagac ucaauggaau acaacugucc caaucucagu ccaagagagg agccagauga      660

cauugauugc uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc      720

agcaggcagg ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg      780

uuugaagacc cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa      840

gauugagaga ugguucguga ggaaccccuu uuuugcagug acggcucuga ccauugccua      900

ccuuguggga agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg      960

uccggccuac ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca     1020

uggaggaacu uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc     1080

ugacaagccu ucauuggaca ucucacuaga gacaguagcc auugauagac cugcugaggu     1140

gaggaaagug uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag     1200

cacuggagag gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua     1260

uucugauaga ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug     1320

cgccaaauuc acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca     1380

guaugucauc agagcacaau ugcauguagg ggccaagcag gaaaauugga cuaccgacau     1440

uaagacucuc aaguuugaug cccugucagg cucccaggaa gucgaguuca uuggguaugg     1500

aaaagcuaca cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacaucgc     1560

ugagauggaa acagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc     1620

auggcagagu ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc     1680

uccgcaugcc gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac     1740

agcucuuacu ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu     1800

acauggugga cauguuucuu gcagagugaa auugucagcu uugacacuca aggggacauc     1860

cuacaaaaua ugcacugaca aaauguuuuu ugucaagaac ccaacugaca cuggccaugg     1920

cacuguugug augcagguga aagugucaaa aggagccccc ugcaggauuc cagugauagu     1980

agcugaugau cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc     2040

cucaaccaau gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau     2100

uaucguuggg agaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau     2160

aggaaaguug uucacucaga ccaugaaagg cguggaacgc cuggccguca ugggagacac     2220

cgccugggau uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac     2280

gguguuuggc ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau     2340

caugggggcg guacuuauau ggguuggcau caacacaaga aacaugacaa uguccaugag     2400

caugaucuug guaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg     2460

augcgccauc aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag     2520

agacucugau gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc     2580

aucaauagug aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu     2640

ugagcaugag auguggagaa gcagggcaga ugagaucaau gccauuuuug aggaaaacga     2700

gguggacauu ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc     2760

auuuuccaga auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu     2820

guucucccca gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug     2880

cccguuuuca aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu     2940

caccacacgc guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau     3000

cuugggugca gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg     3060

aagucaugaa guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga     3120

gugugagugg ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau     3180

gccgagauca aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca     3240

gacgaacgga ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac     3300

uagcgugauc auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga     3360

uagcgggaaa guuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu     3420

ccaugguagu gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag     3480

ccaucuggug cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu     3540

gagcaugaug auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaauguu     3600

gguuggagga guagugcucu ugggagcaau gcuggucggg caaguaacuc uccuugauuu     3660

gcugaaacuc acaguggcug ugggauugca uuuccaugag augaacaaug gaggagacgc     3720

cauguauaug gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg     3780

gcucaggacc cuauggagcc cucgggaacg ccuugugcug acccuaggag cagccauggu     3840

ggagauugcc uuggguggcg ugaugggcgg ccuguggaag uaucuaaaug caguuucucu     3900

cugcauccug acaauaaaug cuguugcuuc uaggaaagca ucaaauacca ucuugccccu     3960

cauggcucug uugacaccug ucacuauggc ugaggugaga cuugccgcaa uguucuuuug     4020

ugccgugguu aucauagggg uccuucacca gaauuucaag gacaccucca ugcagaagac     4080

uauaccucug guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg     4140

ccugugugca uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc     4200

acucgcagca gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa     4260

cuuccuuggu ccgauugcag uuggaggacu ccugaugaug cugguuagcg uggcugggag     4320

gguggauggg cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau     4380

cagcgggagu uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu     4440

uucugaagag aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc     4500

ugcccuccau ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg     4560

agcuaggaga aguggggaug ucuuguggga uauucccacu ccuaagauca ucgaggaaug     4620

ugaacaucug gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca     4680

gcgaggagug ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg     4740

agcuuuccuu gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga     4800

ccuugucgcc uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu     4860

ccaguugauc gcggcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu     4920

guucaaagug aggaaugggg gagaaaucgg ggcugucgcu cuugacuauc cgaguggcac     4980

uucaggaucu ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau     5040

ccuugucggu gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg     5100

aaaggaggag cuccaagaga ucccgacaau gcuaaagaaa ggaaugacaa cuguccuuga     5160

uuuucauccu ggagcuggga agacaagacg uuuccuccca cagaucuugg ccgagugcgc     5220

acggagacgc uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa     5280

ggaggcuuuu cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag     5340

cgggagagaa gucauugaug cuaugugcca ugccacccua acuuacagga uguuggaacc     5400

aacuaggguu guuaacuggg aagugaucau uauggaugaa gcccauuuuu uggauccagc     5460

uagcauagcc gcuagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau     5520

cuugaugaca gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau     5580

agaagauguu caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu     5640

ggcugacaaa aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc     5700

ugccucuuug cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag     5760

agaauacccc acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga     5820

aaugggagcc aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu     5880

gcuuguggau gaagggagga agguggcaau aaaagggcca cuucguaucu ccgcauccuc     5940

ugcugcucaa aggagggggc gcauugggag aaaucccaac agagauggag acucauacua     6000

cuauucugag ccuacaagug aaaauaaugc ccaccacguc ugcugguugg aggccucaau     6060

gcucuuggac aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg     6120

aacuaaaaca ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu     6180

cagagaacua gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc     6240

ugguuugaag acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu     6300

gaaugacagc ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg     6360

cccaaggugg ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa     6420

guuugcugaa gguaggaggg gagcugcuga agugcuaguu gugcugagug aacucccuga     6480

uuuccuggcu aaaaaaggug gagaggcaau ggauaccauc aguguguuuc uccacucuga     6540

ggaaggcucu agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu     6600

caugcuguuu auacuggcug gacuccugac aucgggaaug gucaucuuuu ucaugucucc     6660

caaaggcauc aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau     6720

guuccuugga ggcgucaaac ccacucacau cuccuauauc augcucauau ucuuuguccu     6780

gauggugguu gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc     6840

auaccucauu auuggcaucc ugacgcuggu uucagcggug gcagccaacg agcuaggcau     6900

gcuggagaaa accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc     6960

acccuggagu uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg     7020

cauuguuaca augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu     7080

gucucugucu ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc     7140

auucaugaag augaauaucu cggucauaau gcugcugguc aguggcugga auucaauaac     7200

agugaugccu cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc     7260

uggaaucaaa gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccaa     7320

gaacccugug guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc     7380

ccuuuaugag aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc     7440

caugugcaga acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugccucagg     7500

gccgcucaua gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac     7560

aggagucaug agggggaauc acuaugcuuu ugugggaguc auguacaauc uauggaagau     7620

gaaaacugga cgccggggga gcgcgaaugg aaaaacuuug ggugaagucu ggaagaggga     7680

acugaaucug uuggacaagc gacaguuuga guuguauaaa aggaccgaca uuguggaggu     7740

ggaucgugau acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu     7800

cuccaggggg accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg     7860

uagggugauu gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa     7920

ggaagugagu ggggucaaag gauuuacucu uggaagagac ggccaugaga aacccaugaa     7980

ugugcaaagu cugggaugga acaucaucac cuucaaggac aaaacugaua uccaccgccu     8040

agaaccagug aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu     8100

cacagagggg gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg     8160

gguugacaac uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu     8220

ggaauugcuc caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc     8280

cacucaugaa auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca     8340

aacaucccgc cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc     8400

ugacgucauc cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa     8460

agaggccaua gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua     8520

ugacaaugac aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc     8580

aggaagugcg gcgagcaugg uaaauggugu uauuaaaauu cugacauauc caugggacag     8640

gauagaggag gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu     8700

guuuaaagaa aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau     8760

gaaaguuguc aacagguggc uguuccgcca ccuggccaga gaaaagaacc ccagacugug     8820

cacaaaggaa gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga     8880

agaacaagaa caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu     8940

gguggaugaa gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau     9000

gauggggaaa agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau     9060

augguauaug uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga     9120

ggaccauugg gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua     9180

ccuaggauau gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga     9240

caccgcugga ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu     9300

gaacuacaug agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa     9360

gaacaaagug gugaaagugu ugagaccagc cccaggaggg aaagccuaca uggaugucau     9420

aagucgacga gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac     9480

caacuugaaa guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca     9540

uguucaagau ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg     9600

auguaacaga cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga     9660

ugacagguuc ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau     9720

aucugaaugg cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca     9780

ccacuuccau gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca     9840

ggacgagcuc auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac     9900

agcuugccuc agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga     9960

caugaggcua cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg    10020

acgcacaaca uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga    10080

gguguggaac agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa    10140

aaaauggaga gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau    10200

uggaaugacc aauagggcca ccugggccuc ccacauccau uuagucaucc aucguauccg    10260

aacgcugauu ggacaggaga aauacacuga cuaccuaaca gucauggaca gguauucugu    10320

ggaugcugac cugcaacugg gugagcuuau cugaaacacc aucuaacagg aauaaccggg    10380

auacaaacca cggguggaga accggacucc ccacaaccug aaaccgggau auaaaccacg    10440

gcuggagaac cggacuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug    10500

gagaaccgga cuccacacau ugagacagaa gaaguuguca gcccagaacc ccacacgagu    10560

uuugccacug cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa    10620

aaaccugguu ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc    10680

cucccacgug gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa    10740

auagugggac cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccaga    10800

ggucugugag cacaguuugc ucaagaauaa gcagaccuuu ggaugacaaa cacaaaacca    10860

cu                                                                   10862


<210> 5
<211> 10862
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV 17DD strain

<400> 5
aguaaauccu gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa       60

acacauuugg auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau      120

gucuggucgu aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg      180

cuccuuguca aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc      240

aagagguguu caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau      300

cacagcccac cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu      360

aaggaaaguu aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg      420

uucccaugau guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg      480

agugaccuug gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg      540

gaaaacauuc ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug      600

gugcccagac ucaauggaau acaacugucc caaucucagu ccgagagagg agccagauga      660

cauugauugc uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc      720

agcaggcagg ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg      780

uuugaagacc cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa      840

gauugagaga ugguucguga ggaaccccuu uuuugcagug acagcucuga ccauugccua      900

ccuuguggga agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg      960

uccggccuac ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca     1020

uggaggaacu uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc     1080

ugacaagccu ucauuggaca ucucacuaga gacaguagcc auugauagac cugcugaggc     1140

gaggaaagug uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag     1200

cacuggagag gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua     1260

uucugauaga ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug     1320

cgccaaauuc acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca     1380

guaugucauc agagcacaau ugcauguagg ggccaagcag gaaaauugga auaccagcau     1440

uaagacucuc aaguuugaug cccugucagg cucccaggaa gucgaguuca uuggguaugg     1500

aaaagcuaca cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacauagc     1560

ugagauggaa acagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc     1620

auggcagagu ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc     1680

uccgcaugcc gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac     1740

agcucuuacu ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu     1800

acauggugga cauguuucuu gcagagugaa auugucagcu uugacacuca aggggacauc     1860

cuacaaaaua ugcacugaca aaauguuuuu ugucaagaac ccaacugaca cuggccaugg     1920

cacuguugug augcagguga aagugccaaa aggagccccc ugcaggauuc cagugauagu     1980

agcugaugau cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc     2040

cucaaccaau gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau     2100

uaucguugga agaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau     2160

aggaaaguug uucacucaga ccaugaaagg cguggaacgc cuggccguca ugggagacgu     2220

cgccugggau uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac     2280

gguguuuggc ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau     2340

caugggggcg guacuuauau ggguuggcau caacacaaga aacaugacaa uguccaugag     2400

caugaucuug guaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg     2460

augcgccauc aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag     2520

agacucugau gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc     2580

aucaauagug aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu     2640

ugagcaugag auguggagaa gcagggcaga ugagaucaau gccauuuuug aggaaaacga     2700

gguggacauu ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc     2760

auuuuccaga auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu     2820

guucucccca gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug     2880

cccguuuuca aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu     2940

caccacacgc guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau     3000

cuugggugca gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg     3060

aagucaugaa guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga     3120

gugugagugg ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau     3180

gccgagauca aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca     3240

gacgaacgga ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac     3300

uagcgugauc auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga     3360

uagcgggaaa guuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu     3420

ccaugguagu gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag     3480

ccaucuggug cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu     3540

gagcaugaug auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaaugcu     3600

gguuggagga guagugcucu ugggagcaau gcugguuggg caaguaacuc uccuugauuu     3660

gcugaaacuc acaguggcug ugggauugca uuuccaugag augaacaaug gaggagacgc     3720

cauguauaug gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg     3780

gcucaggacc cuauggagcc cucgggaacg ccuugugcug acccuaggag cagccauggu     3840

ggagauugcc uuggguggcg ugaugggcgg ccuguggaag uaucuaaaug caguuucucu     3900

cugcauccug acaauaaaug cuguugcuuc uaggaaagca ucaaauacca ucuugccccu     3960

cauggcucug uugacaccug ucacuauggc ugaggugaga cuugccgcaa ugcucuuuug     4020

ugccgugguu aucauagggg uccuucacca gaacuucaag gacaccucca ugcagaagac     4080

uauaccucug guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg     4140

ccugugugca uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc     4200

acuugcagca gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa     4260

cuuccuuggu ccgauugcag uuggaggacu ccugaugaug cugguuagcg uggcugggag     4320

gguggauggg cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau     4380

cagcgggagu uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu     4440

uucugaagag aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc     4500

ugcccuccau ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg     4560

agcuaggaga aguggggaug ucuuguggga uauucccacu ccuaagauca uugaggaaug     4620

ugaacaucug gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca     4680

gcgaggagug ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg     4740

agcuuuccuu gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga     4800

ccuugucgcc uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu     4860

ccaguugauc gcugcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu     4920

guucaaagug aggaaugggg gggaaaucgg ggcuguugcu cuugacuauc caaguggcac     4980

uucaggaucu ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau     5040

ccuugucggu gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg     5100

aaaggaggag cuccgagaga ucccgacaau gcuaaagaaa ggaaugacaa cuauccuuga     5160

uuuucauccu ggagcuggga agacaagacg uuuccuccca cagaucuugg ccgagugcgc     5220

acggcgacgc uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa     5280

ggaggcuuuu cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag     5340

cgggagagaa gucauugaug caaugugcca ugccacccua acuuacagga uguuggaacc     5400

aacuaggguu guuaacuggg aagugaucau uauggaugaa gcccauuuuu uggauccagc     5460

uagcauagcc gcuagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau     5520

cuugaugaca gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau     5580

agaagauguu caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu     5640

ggcugacaaa aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc     5700

ugccucuuug cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag     5760

agaauacccc acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga     5820

aaugggagcc aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu     5880

gcuuguggau gaagggagga agguggcaau aaaagggcca cuucguaucu ccgcauccuc     5940

ugcugcucaa aggagggggc gcauugggag aaaucccaac agagauggag acucauacua     6000

cuauucugag ccuacaagug aaaauaaugc ccaccacguc ugcugguugg aggccucaau     6060

gcucuuggau aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg     6120

aacuaaaaca ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu     6180

cagagaacua gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc     6240

ugguuugaag acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu     6300

gaaugacagc ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg     6360

cccaaggugg ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa     6420

guuugcugaa gguaggaggg gagcugcuga agugcuaguu gugcugagug aacucccuga     6480

uuuccuggcu aaaaaaggug gagaggcaau ggacaccauc aguguguuuc uccacucuga     6540

ggaaggcucu agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu     6600

caugcuguuu auacuggcug gacuccugac aucgggaaug gucaucuuuu ucaugucucc     6660

caaaggcauc aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau     6720

guuccuugga ggcgucaaac ccacucacau cuccuauauc augcucauau ucuuuguccu     6780

gauggugguu gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc     6840

auaccucauu auuggcaucc ugacgcuggu uucagcggug gcagccaacg agcuaggcau     6900

gcuggagaaa accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc     6960

acccuggagu uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg     7020

cauuguuaca augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu     7080

gucucugucu ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc     7140

auucaugaag augaauaucu cggucauaau gcugcugguc aguggcugga auucaauaac     7200

agugaugccu cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc     7260

uggaaucaaa gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccaa     7320

gaacccugug guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc     7380

ccuuuaugag aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc     7440

caugugcaga acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugccuuagg     7500

gccgcucaua gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac     7560

aggagucaug cgggggaauc acuaugcuuu ugugggaguc auguacaauc uauggaagau     7620

gaaaacugga cgccggggga gcgcgaaugg aaaaacuuug ggugaagucu ggaagaggga     7680

acugaaucug uuggacaagc aacaguuuga guuguauaaa aggaccgaca uuguggaggu     7740

ggaucgugau acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu     7800

cuccaggggg accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg     7860

uagggugauu gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa     7920

ggaagugagu ggggucaaag gauuuacucu uggaagagac ggccaugaga aaccuaugaa     7980

ugugcaaagu cugggaugga acaucaucac cuucaaggac aaaacugaca uccaccgccu     8040

agaaccagug aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu     8100

cacagagggg gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg     8160

gguugacaac uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu     8220

ggaauugcuc caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc     8280

cacucaugaa auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca     8340

aacaucccgc cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc     8400

ugacgucauc cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa     8460

agaggccaua gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua     8520

ugacaaugac aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc     8580

aggaagugcg gcgagcaugg uaaauggugu uauuaaaauu cugacauauc caugggacag     8640

gauagaggag gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu     8700

guuuaaagaa aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau     8760

gaaaguuguc aacagguggc uguuccgcca ccuggccaga gaaaagagcc ccagacugug     8820

cacaaaggaa gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga     8880

agaacaagaa caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu     8940

gguggaugaa gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau     9000

gauggggaaa agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau     9060

augguauaug uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga     9120

ggaccauugg gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua     9180

ccuaggauau gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga     9240

caccgcugga ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu     9300

gaacuacaug agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa     9360

gaacaaagug gugaaagugu ugagaccagc cccagggggg aaagccuaca uggaugucau     9420

aagucgacga gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac     9480

caacuugaaa guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca     9540

uguucaagau ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg     9600

auguaacaga cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga     9660

ugacagguuc ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau     9720

aucugaaugg cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca     9780

ccacuuccau gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca     9840

ggacgagcuc auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac     9900

agcuugccuc agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga     9960

caugaggcua cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg    10020

acgcacaaca uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga    10080

gguguggaac agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa    10140

aaaauggaga gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau    10200

uggaaugacc aauagggcca ccugggccuc ccacauccau uuagucaucc aucguauccg    10260

aacgcugauu ggacaggaga aauacacuga cuaccuaaca gucauggaca gguauucugu    10320

ggaugcugac cugcaacugg gugagcuuau cugaaacacc aucuaacagg aauaaccggg    10380

auacaaacca cggguggaga accggacucc ccacaaccug aaaccgggau auaaaccacg    10440

gcuggagaac cggacuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug    10500

gagaaccgga cuccacacau ugagacagaa gaaguuguca gcccagaacu ccacacgagu    10560

uuugccacug cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa    10620

aaaccugguu ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc    10680

cucccacgug gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa    10740

auagugggac cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccaga    10800

ggucugugag cacaguuugc ucaagaauaa gcagaccuuu ggaugacaaa cacaaaacca    10860

cu                                                                   10862


<210> 6
<211> 10833
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV Asibi strain

<400> 6
gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa acacauuugg       60

auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau gucuggucgu      120

aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg cuccuuguca      180

aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc aagagguguu      240

caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau cacggcccac      300

cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu aaggaaaguu      360

aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg uucccaugau      420

guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg agugaccuug      480

gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg gaaaacauuc      540

ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug gugcccagac      600

ucaauggaau acaacugucc caaucucagu ccaagagagg agccagauga cauugauugc      660

uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc agcaggcagg      720

ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg uuugaagacc      780

cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa gauugagaga      840

uggcucguga ggaaccccuu uuuugcagug acagcucuga ccauugccua ccuuguggga      900

agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg uccggccuac      960

ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca uggaggaacu     1020

uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc ugacaagccu     1080

ucauuggaca ucucacuaga gacaguagcc auugauggac cugcugaggc gaggaaagug     1140

uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag cacuggagag     1200

gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua uucugauaga     1260

ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug cgccaaauuc     1320

acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca guaugucauc     1380

agagcacaau ugcauguagg ggccaagcag gaaaauugga auaccgacau uaagacucuc     1440

aaguuugaug cccugucagg cucccaggaa gccgaguuca cuggguaugg aaaagcuaca     1500

cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacaucgc ugagauggaa     1560

aaagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc auggcagagu     1620

ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc uccgcaugcc     1680

gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac agcucuuacc     1740

ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu acauggugga     1800

cauguuuccu gcagagugaa auugucagcu uugacacuca aggggacauc cuacaaaaug     1860

ugcacugaca aaaugucuuu ugucaagaac ccaacugaca cuggccaugg cacuguugug     1920

augcagguga aagugccaaa aggagccccc ugcaagauuc cagugauagu agcugaugau     1980

cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc cucaaccaau     2040

gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau uaucguuggg     2100

acaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau aggaaaguug     2160

uucacucaga ccaugaaagg cgcggaacgc cuggccguca ugggagacgc cgccugggau     2220

uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac gguguuuggc     2280

ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau caugggggcg     2340

guacucauau ggguuggcau caacacaaga aacaugacaa uguccaugag caugaucuug     2400

guaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg augcgccauc     2460

aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag agacucugau     2520

gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc aucaauagug     2580

aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu ugagcaugag     2640

auguggagaa gcagggcaga ugagaucaau gccauucuug aggaaaacga gguggacauu     2700

ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc auuuuccaga     2760

auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu guucucccca     2820

gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug cccguuuuca     2880

aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu caccacacgc     2940

guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau cuugggugca     3000

gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg aagucaugaa     3060

guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga gugugagugg     3120

ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau gccgagauca     3180

aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca gacgaacgga     3240

ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac uagcgugauc     3300

auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga uagcgggaaa     3360

auuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu ccaugguagu     3420

gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag ccaucuggug     3480

cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu gagcaugaug     3540

auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaauguu gguuggagga     3600

guggugcucu ugggagcaau gcuggucggg caaguaacuc uccuugauuu gcugaaacuc     3660

acaguggcug ugggauugca uuuccaugag augaacaaug gaggagacgc cauguauaug     3720

gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg gcucaggacc     3780

cuauggagcc cucgggaacg ccuuguacug acccuaggag cagccauggu ggagauugcc     3840

uuggguggca ugaugggcgg ccuguggaag uaucuaaaug caguuucucu cugcauccug     3900

acaauaaaug cuguagcuuc uaggaaagca ucaaauacca ucuugccccu cauggcucug     3960

uugacaccug ucacuauggc ugaggugaga cuugccacaa ugcucuuuug uaccgugguu     4020

aucauagggg uccuucacca gaacuccaag gacaccucca ugcagaagac uauaccucug     4080

guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg ccugugugca     4140

uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc acucgcagca     4200

gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa cuuccuuggu     4260

ccgauugcag uuggaggaau ccugaugaug cugguuagcg uggcugggag gguggauggg     4320

cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau cagcggaagu     4380

uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu uucugaagag     4440

aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc ugccauucau     4500

ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg agcuaggaga     4560

aguggggaug ucuuguggga uauucccacu ccuaagauca uugaggaaug ugaacaucug     4620

gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca gcgaggagug     4680

ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg agcuuuccuu     4740

gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga ccuugucgcc     4800

uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu ccaauugauc     4860

gcugcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu guucaaagug     4920

aggaaugggg gagaaaucgg ggcugucgcu cuugacuauc cgaguggcac uucaggaucu     4980

ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau ccuugucggu     5040

gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg aaaggaggag     5100

cuccaagaga ucccgacaau gcuaaagaaa ggaaugacaa cuauccuuga uuuucauccu     5160

ggagcuggga agacaagacg uuuucuccca cagaucuugg ccgagugcgc acggagacgc     5220

uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa ggaggcuuuu     5280

cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag cgggagagaa     5340

gucauugaug ccaugugcca ugccacccua acuuacagga uguuggaacc aacuaggguu     5400

guuaacuggg aagugaucau cauggaugaa gcccauuuuu uggauccagc uagcauagcc     5460

gccagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau cuugaugaca     5520

gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau agaagauguu     5580

caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu ggcugacaaa     5640

aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc ugccucuuug     5700

cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag agaauacccc     5760

acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga aaugggagcc     5820

aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu gcuuguggau     5880

gaagggagga agguggcaau aaaagggcca cuucgcaucu ccgcauccuc ugcugcucaa     5940

aggagggggc gcauugggag aaaucccaac agagauggag acucauacua cuauucugag     6000

ccuacaagug aagauaaugc ccaccacguc ugcugguugg aggccucaau gcucuuggac     6060

aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg aacuaaaaca     6120

ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu cagagaacua     6180

gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc ugguuugaag     6240

acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu gaaugacagc     6300

ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg cccaaggugg     6360

ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa guuugcugaa     6420

gguaggaggg gagcugcgga agugcuaguu gugcugagug aacucccuga uuuccuggcu     6480

aaaaaaggug gagaggcaau ggauaccauc aguguguuuc uccacucuga ggaaggcucu     6540

agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu caugcuguuu     6600

auacuggcug gacuacugac aucgggaaug gucaucuuuu ucaugucucc caaaggcauc     6660

aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau guuccuugga     6720

ggcgucaaac ccacucacau cuccuauauc augcucauau ucuuuguccu gauggugguu     6780

gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc auaccucauu     6840

auuggcaucc ugacgcuggu uucaguggug gcagccaacg agcuaggcau gcuggagaaa     6900

accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc acccuggagu     6960

uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg cauuguuaca     7020

augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu gucucugucu     7080

ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc auucaugaag     7140

augaauaucu cggucauaau acugcugguc aguggcugga auucaauaac agugaugccu     7200

cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc uggaaucaaa     7260

gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccaa gaacccugug     7320

guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc ccuuuaugag     7380

aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc caugugcaga     7440

acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugccuuagg gccgcucaua     7500

gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac aggagucaug     7560

cgggggaauu acuaugcuuu ugugggaguc auguacaauc uauggaagau gaaaacugga     7620

cgccggggga gugcgaaugg aaaaacuuug ggugaagucu ggaagaggga acugaaucug     7680

uuggacaagc aacaguuuga guuguauaaa aggaccgaca uuguggaggu ggaucgugau     7740

acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu cuccaggggg     7800

accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg uagggugauu     7860

gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa ggaagugagu     7920

ggggucaaag gauucacucu uggaagagac ggccaugaga aacccaugaa ugugcaaagu     7980

cugggaugga acaucauuac cuucaaggac aaaacugaua uccaccgccu agaaccagug     8040

aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu cacagagggg     8100

gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg gguugacaac     8160

uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu ggaauugcuc     8220

caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc cacucaugaa     8280

auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca aacaucccgc     8340

cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc ugacgucauc     8400

cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa agaggccaua     8460

gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua ugacaaugac     8520

aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc aggaagugcg     8580

gcgagcaugg uaaauggugu uauuaaaauu cugacauacc caugggacag gauagaggag     8640

gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu guuuaaagaa     8700

aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau gaaaguuguc     8760

aacagguggc uguuccgcca ccuggccaga gaaaagaacc ccagacugug cacaaaggaa     8820

gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga agaacaagaa     8880

caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu gguggaugaa     8940

gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau gauggggaaa     9000

agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau augguauaug     9060

uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga ggaccauugg     9120

gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua ccuaggauau     9180

gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga caccgcugga     9240

ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu gaacuacaug     9300

agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa gaacaaagug     9360

gugaaagugu ugagaccagc cccaggaggg aaagccuaca uggaugucau aagucgacga     9420

gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac caacuugaaa     9480

guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca uguucaagau     9540

ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg auguaacaga     9600

cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga ugacagguuc     9660

ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau aucugaaugg     9720

cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca ccacuuccau     9780

gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca ggacgagcuc     9840

auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac agcuugccuc     9900

agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga caugaggcua     9960

cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg acgcacaaca    10020

uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga gguguggaac    10080

agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa agaauggaga    10140

gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau uggaaugacc    10200

aauagggcca ccugggccuc ccacauccau uuggucaucc aucguauccg aacgcugauu    10260

ggacaggaga aauauacuga cuaccuaaca gucauggaca gauauucugu ggaugcugac    10320

cugcaaccgg gugagcuuau cugaaacacc aucuaauagg aauaaccggg auacaaacca    10380

cggguggaga accggacucc ccacaacuug aaaccgggau auaaaccacg gcuggagaac    10440

cggacuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug gagaaccgga    10500

cuccacacau ugagacagaa gaaguuguca gcccagaacu ccacacgagu uuugccacug    10560

cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa aaaccugguu    10620

ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc cucccacgug    10680

gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa auagugggac    10740

cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccagg ggucugugag    10800

cacaguuugc ucaagaauaa gcagaccuuu gga                                 10833


<210> 7
<211> 10862
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV TV3112 strain

<400> 7
aguaaauccu gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa       60

acacauuugg auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau      120

gucuggucgu aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg      180

cuccuuguca aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc      240

aagagguguu caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau      300

cacagcccac cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu      360

aaggaaaguc aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg      420

uucccaugau guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg      480

agugaccuug gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg      540

gaaaacauuc ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug      600

gugcccagac ucaauggaau acaacugucc caaucucagu ccaagagagg agccagauga      660

cauugauugc uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc      720

agcaggcagg ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg      780

uuugaagacc cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa      840

gauugagaga ugguucguga ggaaccccuu uuuugcagug acggcucuga ccauugccua      900

ccuuguggga agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg      960

uccggccuac ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca     1020

uggaggaacu uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc     1080

ugacaagccu ucauuggaca ucucacuaga gacaguagcc auugauagac cugcugaggu     1140

gaggaaagug uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag     1200

cacuggagag gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua     1260

uucugauaga ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug     1320

cgccaaauuc acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca     1380

guaugucauc agagcacaau ugcauguugg ggccaagcag gaaaauugga cuaccgacau     1440

uaagacucuc aaguuugaug cccugucagg cucccaggaa gucgaguuca uuggguaugg     1500

aaaagcuaca cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacaucgc     1560

ugagauggaa acagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc     1620

auggcagagu ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc     1680

uccgcaugcc gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac     1740

agcucuuacu ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu     1800

acauggugga cauguuucuu gcagagugaa auugucagcu uugacacuca aggggacauc     1860

cuacaaaaua ugcacugaca aaauguuuuu ugucaagaac ccaacugaca cuggccaugg     1920

cacuguugug augcagguga aagugucaaa aggagccccc ugcaggauuc cagugauagu     1980

agcugaugau cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc     2040

cucaaccaau gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau     2100

uaucguuggg agaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau     2160

aggaaaguug uucacucaga ccaugaaagg cguggaacgc cuggccguca ugggagacac     2220

cgccugggau uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac     2280

gguguuuggc ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau     2340

caugggggcg guacuuauau ggguuggcau caacacaaga aacaugacaa uguccaugag     2400

caugaucuug uuaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg     2460

augcgccauc aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag     2520

agacucugau gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc     2580

aucaauagug aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu     2640

ugagcaugag auguggagaa gcagggcaga ugagaucaau gccauuuuug aggaaaacga     2700

gguggacauu ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc     2760

auuuuccaga auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu     2820

guucucccca gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug     2880

cccguuuuca aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu     2940

caccacacgc guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau     3000

cuugggugca gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg     3060

aagucaugaa guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga     3120

gugugagugg ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau     3180

gccgagauca aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca     3240

gacgaacgga ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac     3300

uagcgugauc auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga     3360

uagcgggaaa guuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu     3420

ccaugguagu gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag     3480

ccaucuggug cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu     3540

gagcaugaug auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaauguu     3600

gguuggagga guagugcucu ugggagcaau gcuggucggg caaguaacuc uccuugauuu     3660

gcugaaacuc acaguggcug ugggauugca uuuccaugag gugaacaaug gaggagacgc     3720

cauguauaug gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg     3780

gcucaggacc cuauggagcc cucgggaacg ccuugugcug acccuaggag cagccauggu     3840

ggagauugcc uuggguggcg ugaugggcgg ccuguggaag uaucuaaaug caguuucucu     3900

cugcauccug acaauaaaug cuguugcuuc uaggaaagca ucaaauacca ucuugccccu     3960

cauggcucug uugacaccug ucacuauggc ugaggugaga cuugccgcaa uguucuuuug     4020

ugccgugguu aucauagggg uccuucacca gaauuucaag gacaccucca ugcagaagac     4080

uauaccucug guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg     4140

ccugugugca uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc     4200

acucgcagca gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa     4260

cuuccuuggu ccgauugcag uuggaggacu ccugaugaug cugguuagcg uggcugggag     4320

gguggauggg cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau     4380

cagcgggagu uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu     4440

uucugaagag aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc     4500

ugcccuccau ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg     4560

agcuaggaga aguggggaug ucuuguggga uauucccacu ccuaagauca ucgaggaaug     4620

ugaacaucug gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca     4680

gcgaggagug ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg     4740

agcuuuccuu gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga     4800

ccuugucgcc uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu     4860

ccaguugauc gcggcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu     4920

guucaaagug aggaaugggg gagaaaucgg ggcugucgcu cuugacuauc cgaguggcac     4980

uucaggaucu ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau     5040

ccuugucggu gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg     5100

aaaggaggag cuccaagaga ucccgacaau gcuaaagaaa ggaaugacaa cuguccuuga     5160

uuuucauccu ggagcuggga agacaagacg uuuccuccca cagaucuugg ccgagugcgc     5220

acggagacgc uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa     5280

ggaggcuuuu cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag     5340

cgggagagaa gucauugaug cuaugugcca ugccacccua acuuacagga uguuggaacc     5400

aacuaggguu guuaacuggg aagugaucau uauggaugaa gcccauuuuu uggauccagc     5460

uagcauagcc gcuagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau     5520

cuugaugaca gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau     5580

agaagauguu caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu     5640

ggcugacaaa aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc     5700

ugccucuuug cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag     5760

agaauacccc acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga     5820

aaugggagcc aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu     5880

gcuuguggau gaagggagga agguggcaau aaaagggcca cuucguaucu ccgcauccuc     5940

ugcugcucaa aggagggggc gcauugggag aaaucccaac agagauggag acucauacua     6000

cuauucugag ccuacaagug aaaauaaugc ccaccacguc ugcugguugg aggccucaau     6060

gcucuuggac aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg     6120

aacuaaaaca ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu     6180

cagagaacua gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc     6240

ugguuugaag acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu     6300

gaaugacagc ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg     6360

cccaaggugg ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa     6420

guuugcugaa gguaggaggg gagcugcuga agugcuaguu gugcugagug aacucccuga     6480

uuuccuggcu aaaaagggug gagaggcaau ggauaccauc aguguguuuc uccacucuga     6540

ggaaggcucu agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu     6600

caugcuguuu auacuggcug gacuacugac aucgggaaug gucaucuuuu ucaugucucc     6660

caaaggcauc aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau     6720

guuccuugga ggcgucaaac ccacucacau cuccuauauc augcucauau ucuuuguccu     6780

gauggugguu gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc     6840

auaccucauu auuggcaucc ugacgcuggu uucagcggug gcagccaacg agcuaggcau     6900

gcuggagaaa accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc     6960

acccuggagu uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg     7020

cauuguuaca augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu     7080

gucucugucu ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc     7140

auucaugaag augaauaucu cggucauaau gcugcugguc aguggcugga auucaauaac     7200

agugaugccu cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc     7260

uggaaucaaa gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccaa     7320

gaacccugug guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc     7380

ccuuuaugag aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc     7440

caugugcaga acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugcccuagg     7500

gccgcucaua gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac     7560

aggagucaug agggggaauc acuaugcuuu ugugggaguc auguacaauc uauggaagau     7620

gaaaacugga cgccggggga gcgcgaaugg aaaaacuuug ggugaagucu ggaagaggga     7680

acugaaucug uuggacaagc gacaguuuga guuguauaaa aggaccgaca uuguggaggu     7740

ggaucgugau acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu     7800

cuccaggggg accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg     7860

uagggugauu gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa     7920

ggaagugagu ggggucaaag gauuuacucu uggaagagac ggccaugaga aacccaugaa     7980

ugugcaaagu cugggaugga acaucaucac cuucaaggac aaaacugaua uccaccgccu     8040

agaaccagug aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu     8100

cacagagggg gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg     8160

gguugacaac uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu     8220

ggaauugcuc caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc     8280

cacucaugaa auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca     8340

aacaucccgc cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc     8400

ugacgucauc cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa     8460

agaggccaua gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua     8520

ugacaaugac aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc     8580

aggaagugcg gcgagcaugg uaaauggugu uauuaaaauu cugacauauc caugggacag     8640

gauagaggag gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu     8700

guuuaaagaa aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau     8760

gaaaguuguc aacagguggc uguuccgcca ccuggccaga gaaaagaacc ccagacugug     8820

cacaaaggaa gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga     8880

agaacaagaa caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu     8940

gguggaugaa gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau     9000

gauggggaaa agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau     9060

augguauaug uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga     9120

ggaccauugg gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua     9180

ccuaggauau gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga     9240

caccgcugga ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu     9300

gaacuacaug agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa     9360

gaacaaagug gugaaagugu ugagaccagc cccaggaggg aaagccuaca uggaugucau     9420

aagucgacga gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac     9480

caacuugaaa guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca     9540

uguucaagau ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg     9600

auguaacaga cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga     9660

ugacagguuc ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau     9720

aucugaaugg cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca     9780

ccacuuccau gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca     9840

ggacgagcuc auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac     9900

agcuugccuc agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga     9960

caugaggcua cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg    10020

acgcacaaca uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga    10080

gguguggaac agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa    10140

aaaauggaga gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau    10200

uggaaugacc aauagggcca ccugggccuc ccacauccau uuggucaucc aucguauccg    10260

aacgcugauu ggacaggaga aauacacuga cuaccuaaca gucauggaca gguauucugu    10320

ggaugcugac cugcaacugg gugagcuuau cugaaacacc aucuaacagg aauaaccggg    10380

auacaaacca cggguggaga accggacucc ccacaaccug aaaccgggau auaaaccacg    10440

gcuggagaac cggacuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug    10500

gagaaccgga cuccacacau ugagacagaa gaaguuguca gcccagaacc ccacacgagu    10560

uuugccacug cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa    10620

aaaccugguu ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc    10680

cucccacgug gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa    10740

auagugggac cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccaga    10800

ggucugugag cacaguuugc ucaagaauaa gcagaccuuu ggaugacaaa cacaaaacca    10860

cu                                                                   10862


<210> 8
<211> 10862
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA sequence of the YFV TV3111 strain

<400> 8
aguaaauccu gugugcuaau ugaggugcau uggucugcaa aucgaguugc uaggcaauaa       60

acacauuugg auuaauuuua aucguucguu gagcgauuag cagagaacug accagaacau      120

gucuggucgu aaagcucagg gaaaaacccu gggcgucaau augguacgac gaggaguucg      180

cuccuuguca aacaaaauaa aacaaaaaac aaaacaaauu ggaaacagac cuggaccuuc      240

aagagguguu caaggauuua ucuuuuucuu uuuguucaac auuuugacug gaaaaaagau      300

cacagcccac cuaaagaggu uguggaaaau gcuggaccca agacaaggcu uggcuguucu      360

aaggaaaguc aagagagugg uggccaguuu gaugagagga uuguccucaa ggaaacgccg      420

uucccaugau guucugacug ugcaauuccu aauuuuggga augcuguuga ugacgggugg      480

agugaccuug gugcggaaaa acagaugguu gcuccuaaau gugacaucug aggaccucgg      540

gaaaacauuc ucugugggca caggcaacug cacaacaaac auuuuggaag ccaaguacug      600

gugcccagac ucaauggaau acaacugucc caaucucagu ccaagagagg agccagauga      660

cauugauugc uggugcuaug ggguggaaaa cguuagaguc gcauauggua agugugacuc      720

agcaggcagg ucuaggaggu caagaagggc cauugacuug ccuacgcaug aaaaccaugg      780

uuugaagacc cggcaagaaa aauggaugac uggaagaaug ggugaaaggc aacuccaaaa      840

gauugagaga ugguucguga ggaaccccuu uuuugcagug acggcucuga ccauugccua      900

ccuuguggga agcaacauga cgcaacgagu cgugauugcc cuacuggucu uggcuguugg      960

uccggccuac ucagcucacu gcauuggaau uacugacagg gauuucauug agggggugca     1020

uggaggaacu uggguuucag cuacccugga gcaagacaag ugugucacug uuauggcccc     1080

ugacaagccu ucauuggaca ucucacuaga gacaguagcc auugauagac cugcugaggu     1140

gaggaaagug uguuacaaug caguucucac ucaugugaag auuaaugaca agugccccag     1200

cacuggagag gcccaccuag cugaagagaa cgaaggggac aaugcgugca agcgcacuua     1260

uucugauaga ggcuggggca auggcugugg ccuauuuggg aaagggagca uuguggcaug     1320

cgccaaauuc acuugugcca aauccaugag uuuguuugag guugaucaga ccaaaauuca     1380

guaugucauc agagcacaau ugcauguagg ggccaagcag gaaaauugga cuaccgacau     1440

uaagacucuc aaguuugaug cccugucagg cucccaggaa gucgaguuca uuggguaugg     1500

aaaagcuaca cuggaaugcc aggugcaaac ugcgguggac uuugguaaca guuacaucgc     1560

ugagauggaa acagagagcu ggauagugga cagacagugg gcccaggacu ugacccugcc     1620

auggcagagu ggaaguggcg ggguguggag agagaugcau caucuugucg aauuugaacc     1680

uccgcaugcc gccacuauca gaguacuggc ccugggaaac caggaaggcu ccuugaaaac     1740

agcucuuacu ggcgcaauga ggguuacaaa ggacacaaau gacaacaacc uuuacaaacu     1800

acauggugga cauguuucuu gcagagugaa auugucagcu uugacacuca aggggacauc     1860

cuacaaaaua ugcacugaca aaauguuuuu ugucaagaac ccaacugaca cuggccaugg     1920

cacuguugug augcagguga aagugucaaa aggagccccc ugcaggauuc cagugauagu     1980

agcugaugau cuuacagcgg caaucaauaa aggcauuuug guuacaguua accccaucgc     2040

cucaaccaau gaugaugaag ugcugauuga ggugaaccca ccuuuuggag acagcuacau     2100

uaucguuggg agaggagauu cacgucucac uuaccagugg cacaaagagg gaagcucaau     2160

aggaaaguug uucacucaga ccaugaaagg cguggaacgc cuggccguca ugggagacac     2220

cgccugggau uucagcuccg cuggaggguu cuucacuucg guugggaaag gaauucauac     2280

gguguuuggc ucugccuuuc aggggcuauu uggcggcuug aacuggauaa caaaggucau     2340

caugggggcg guacuuauau ggguuggcau caacacaaga aacaugacaa uguccaugag     2400

caugaucuug uuaggaguga ucaugauguu uuugucucua ggaguugggg cggaucaagg     2460

augcgccauc aacuuuggca agagagagcu caagugcgga gaugguaucu ucauauuuag     2520

agacucugau gacuggcuga acaaguacuc auacuaucca gaagauccug ugaagcuugc     2580

aucaauagug aaagccucuu uugaagaagg gaaguguggc cuaaauucag uugacucccu     2640

ugagcaugag auguggagaa gcagggcaga ugagaucaau gccauuuuug aggaaaacga     2700

gguggacauu ucuguugucg ugcaggaucc aaagaauguu uaccagagag gaacucaucc     2760

auuuuccaga auucgggaug gucugcagua ugguuggaag acuuggggua agaaccuugu     2820

guucucccca gggaggaaga auggaagcuu caucauagau ggaaagucca ggaaagaaug     2880

cccguuuuca aaccgggucu ggaauucuuu ccagauagag gaguuuggga cgggaguguu     2940

caccacacgc guguacaugg acgcagucuu ugaauacacc auagacugcg auggaucuau     3000

cuugggugca gcggugaacg gaaaaaagag ugcccauggc ucuccaacau uuuggauggg     3060

aagucaugaa guaaauggga cauggaugau ccacaccuug gaggcauuag auuacaagga     3120

gugugagugg ccacugacac auacgauugg aacaucaguu gaagagagug aaauguucau     3180

gccgagauca aucggaggcc caguuagcuc ucacaaucau aucccuggau acaagguuca     3240

gacgaacgga ccuuggaugc agguaccacu agaagugaag agagaagcuu gcccagggac     3300

uagcgugauc auugauggca acugugaugg acggggaaaa ucaaccagau ccaccacgga     3360

uagcgggaaa guuauuccug aaugguguug ccgcuccugc acaaugccgc cugugagcuu     3420

ccaugguagu gauggguguu gguaucccau ggaaauuagg ccaaggaaaa cgcaugaaag     3480

ccaucuggug cgcuccuggg uuacagcugg agaaauacau gcugucccuu uugguuuggu     3540

gagcaugaug auagcaaugg aagugguccu aaggaaaaga cagggaccaa agcaaauguu     3600

gguuggagga guagugcucu ugggagcaau gcuggucggg caaguaacuc uccuugauuu     3660

gcugaaacuc acaguggcug ugggauugca uuuccaugag gugaacaaug gaggagacgc     3720

cauguauaug gcguugauug cugccuuuuc aaucagacca gggcugcuca ucggcuuugg     3780

gcucaggacc cuauggagcc cucgggaacg ccuugugcug acccuaggag cagccauggu     3840

ggagauugcc uuggguggcg ugaugggcgg ccuguggaag uaucuaaaug caguuucucu     3900

cugcauccug acaauaaaug cuguugcuuc uaggaaagca ucaaauacca ucuugccccu     3960

cauggcucug uugacaccug ucacuauggc ugaggugaga cuugccgcaa uguucuuuug     4020

ugccgugguu aucauagggg uccuucacca gaauuucaag gacaccucca ugcagaagac     4080

uauaccucug guggcccuca cacucacauc uuaccugggc uugacacaac cuuuuuuggg     4140

ccugugugca uuucuggcaa cccgcauauu ugggcgaagg aguaucccag ugaaugaggc     4200

acucgcagca gcuggucuag ugggagugcu ggcaggacug gcuuuucagg agauggagaa     4260

cuuccuuggu ccgauugcag uuggaggacu ccugaugaug cugguuagcg uggcugggag     4320

gguggauggg cuagagcuca agaagcuugg ugaaguuuca ugggaagagg aggcggagau     4380

cagcgggagu uccgcccgcu augauguggc acucagugaa caaggggagu ucaagcugcu     4440

uucugaagag aaagugccau gggaccaggu ugugaugacc ucgcuggccu ugguuggggc     4500

ugcccuccau ccauuugcuc uucugcuggu ccuugcuggg uggcuguuuc augucagggg     4560

agcuaggaga aguggggaug ucuuguggga uauucccacu ccuaagauca ucgaggaaug     4620

ugaacaucug gaggauggga uuuauggcau auuccaguca accuucuugg gggccuccca     4680

gcgaggagug ggaguggcac agggaggggu guuccacaca auguggcaug ucacaagagg     4740

agcuuuccuu gucaggaaug gcaagaaguu gauuccaucu ugggcuucag uaaaggaaga     4800

ccuugucgcc uaugguggcu cauggaaguu ggaaggcaga ugggauggag aggaagaggu     4860

ccaguugauc gcggcuguuc caggaaagaa cguggucaac guccagacaa aaccgagcuu     4920

guucaaagug aggaaugggg gagaaaucgg ggcugucgcu cuugacuauc cgaguggcac     4980

uucaggaucu ccuauuguua acaggaacgg agaggugauu gggcuguacg gcaauggcau     5040

ccuugucggu gacaacuccu ucguguccgc cauaucccag acugagguga aggaagaagg     5100

aaaggaggag cuccaagaga ucccgacaau gcuaaagaaa ggaaugacaa cuguccuuga     5160

uuuucauccu ggagcuggga agacaagacg uuuccuccca cagaucuugg ccgagugcgc     5220

acggagacgc uugcgcacuc uuguguuggc ccccaccagg guuguucuuu cugaaaugaa     5280

ggaggcuuuu cacggccugg acgugaaauu ccacacacag gcuuuuuccg cucacggcag     5340

cgggagagaa gucauugaug cuaugugcca ugccacccua acuuacagga uguuggaacc     5400

aacuaggguu guuaacuggg aagugaucau uauggaugaa gcccauuuuu uggauccagc     5460

uagcauagcc gcuagagguu gggcagcgca cagagcuagg gcaaaugaaa gugcaacaau     5520

cuugaugaca gccacaccgc cugggacuag ugaugaauuu ccacauucaa auggugaaau     5580

agaagauguu caaacggaca uacccaguga gcccuggaac acagggcaug acuggauccu     5640

ggcugacaaa aggcccacgg caugguuccu uccauccauc agagcugcaa augucauggc     5700

ugccucuuug cguaaggcug gaaagagugu ggugguccug aacaggaaaa ccuuugagag     5760

agaauacccc acgauaaagc agaagaaacc ugacuuuaua uuggccacug acauagcuga     5820

aaugggagcc aaccuuugcg uggagcgagu gcuggauugc aggacggcuu uuaagccugu     5880

gcuuguggau gaagggagga agguggcaau aaaagggcca cuucguaucu ccgcauccuc     5940

ugcugcucaa aggagggggc gcauugggag aaaucccaac agagauggag acucauacua     6000

cuauucugag ccuacaagug aaaauaaugc ccaccacguc ugcugguugg aggccucaau     6060

gcucuuggac aacauggagg ugaggggugg aauggucgcc ccacucuaug gcguugaagg     6120

aacuaaaaca ccaguuuccc cuggugaaau gagacugagg gaugaccaga ggaaagucuu     6180

cagagaacua gugaggaauu gugaccugcc cguuuggcuu ucguggcaag uggccaaggc     6240

ugguuugaag acgaaugauc guaaguggug uuuugaaggc ccugaggaac augagaucuu     6300

gaaugacagc ggugaaacag ugaagugcag ggcuccugga ggagcaaaga agccucugcg     6360

cccaaggugg ugugaugaaa gggugucauc ugaccagagu gcgcugucug aauuuauuaa     6420

guuugcugaa gguaggaggg gagcugcuga agugcuaguu gugcugagug aacucccuga     6480

uuuccuggcu aaaaagggug gagaggcaau ggauaccauc aguguguuuc uccacucuga     6540

ggaaggcucu agggcuuacc gcaaugcacu aucaaugaug ccugaggcaa ugacaauagu     6600

caugcuguuu auacuggcug gacuacugac aucgggaaug gucaucuuuu ucaugucucc     6660

caaaggcauc aguagaaugu cuauggcgau gggcacaaug gccggcugug gauaucucau     6720

guuccuugga ggcgucaaac ccacucacau cuccuauauc augcucauau ucuuuguccu     6780

gauggugguu gugauccccg agccagggca acaaaggucc auccaagaca accaaguggc     6840

auaccucauu auuggcaucc ugacgcuggu uucagcggug gcagccaacg agcuaggcau     6900

gcuggagaaa accaaagagg accucuuugg gaagaagaac uuaauuccau cuagugcuuc     6960

acccuggagu uggccggauc uugaccugaa gccaggagcu gccuggacag uguacguugg     7020

cauuguuaca augcucucuc caauguugca ccacuggauc aaagucgaau auggcaaccu     7080

gucucugucu ggaauagccc agucagccuc aguccuuucu uucauggaca aggggauacc     7140

auucaugaag augaauaucu cggucauaau gcugcugguc aguggcugga auucaauaac     7200

agugaugccu cugcucugug gcauagggug cgccaugcuc cacuggucuc ucauuuuacc     7260

uggaaucaaa gcgcagcagu caaagcuugc acagagaagg guguuccaug gcguugccaa     7320

gaacccugug guugauggga auccaacagu ugacauugag gaagcuccug aaaugccugc     7380

ccuuuaugag aagaaacugg cucuauaucu ccuucuugcu cucagccuag cuucuguugc     7440

caugugcaga acgcccuuuu cauuggcuga aggcauuguc cuagcaucag cugcccuagg     7500

gccgcucaua gagggaaaca ccagccuucu uuggaaugga cccauggcug ucuccaugac     7560

aggagucaug agggggaauc acuaugcuuu ugugggaguc auguacaauc uauggaagau     7620

gaaaacugga cgccggggga gcgcgaaugg aaaaacuuug ggugaagucu ggaagaggga     7680

acugaaucug uuggacaagc gacaguuuga guuguauaaa aggaccgaca uuguggaggu     7740

ggaucgugau acggcacgca ggcauuuggc cgaagggaag guggacaccg ggguggcggu     7800

cuccaggggg accgcaaagu uaaggugguu ccaugagcgu ggcuauguca agcuggaagg     7860

uagggugauu gaccuggggu guggccgcgg aggcuggugu uacuacgcug cugcgcaaaa     7920

ggaagugagu ggggucaaag gauuuacucu uggaagagac ggccaugaga aacccaugaa     7980

ugugcaaagu cugggaugga acaucaucac cuucaaggac aaaacugaua uccaccgccu     8040

agaaccagug aaaugugaca cccuuuugug ugacauugga gagucaucau cgucaucggu     8100

cacagagggg gaaaggaccg ugagaguucu ugauacugua gaaaaauggc uggcuugugg     8160

gguugacaac uucuguguga agguguuagc uccauacaug ccagauguuc ucgagaaacu     8220

ggaauugcuc caaaggaggu uuggcggaac agugaucagg aacccucucu ccaggaauuc     8280

cacucaugaa auguacuacg ugucuggagc ccgcagcaau gucacauuua cugugaacca     8340

aacaucccgc cuccugauga ggagaaugag gcguccaacu ggaaaaguga cccuggaggc     8400

ugacgucauc cucccaauug ggacacgcag uguugagaca gacaagggac cccuggacaa     8460

agaggccaua gaagaaaggg uugagaggau aaaaucugag uacaugaccu cuugguuuua     8520

ugacaaugac aaccccuaca ggaccuggca cuacuguggc uccuauguca caaaaaccuc     8580

aggaagugcg gcgagcaugg uaaauggugu uauuaaaauu cugacauauc caugggacag     8640

gauagaggag gucacaagaa uggcaaugac ugacacaacc ccuuuuggac agcaaagagu     8700

guuuaaagaa aaaguugaca ccagagcaaa ggauccacca gcgggaacua ggaagaucau     8760

gaaaguuguc aacagguggc uguuccgcca ccuggccaga gaaaagaacc ccagacugug     8820

cacaaaggaa gaauuuauug caaaaguccg aagucaugca gccauuggag cuuaccugga     8880

agaacaagaa caguggaaga cugccaauga ggcuguccaa gacccaaagu ucugggaacu     8940

gguggaugaa gaaaggaagc ugcaccaaca aggcaggugu cggacuugug uguacaacau     9000

gauggggaaa agagagaaga agcugucaga guuugggaaa gcaaagggaa gccgugccau     9060

augguauaug uggcugggag cgcgguaucu ugaguuugag gcccugggau uccugaauga     9120

ggaccauugg gcuuccaggg aaaacucagg aggaggagug gaaggcauug gcuuacaaua     9180

ccuaggauau gugaucagag accuggcugc aauggauggu gguggauucu acgcggauga     9240

caccgcugga ugggacacgc gcaucacaga ggcagaccuu gaugaugaac aggagaucuu     9300

gaacuacaug agcccacauc acaaaaaacu ggcacaagca gugauggaaa ugacauacaa     9360

gaacaaagug gugaaagugu ugagaccagc cccaggaggg aaagccuaca uggaugucau     9420

aagucgacga gaccagagag gauccgggca gguagugacu uaugcucuga acaccaucac     9480

caacuugaaa guccaauuga ucagaauggc agaagcagag auggugauac aucaccaaca     9540

uguucaagau ugugaugaau caguucugac caggcuggag gcauggcuca cugagcacgg     9600

auguaacaga cugaagagga uggcggugag uggagacgac uguguggucc ggcccaucga     9660

ugacagguuc ggccuggccc ugucccaucu caacgccaug uccaagguua gaaaggacau     9720

aucugaaugg cagccaucaa aaggguggaa ugauugggag aaugugcccu ucuguuccca     9780

ccacuuccau gaacuacagc ugaaggaugg caggaggauu guggugccuu gccgagaaca     9840

ggacgagcuc auugggagag gaaggguguc uccaggaaac ggcuggauga ucaaggaaac     9900

agcuugccuc agcaaagccu augccaacau guggucacug auguauuuuc acaaaaggga     9960

caugaggcua cugucauugg cuguuuccuc agcuguuccc accucauggg uuccacaagg    10020

acgcacaaca uggucgauuc augggaaagg ggaguggaug accacggaag acaugcuuga    10080

gguguggaac agaguaugga uaaccaacaa cccacacaug caggacaaga caauggugaa    10140

aaaauggaga gaugucccuu aucuaaccaa gagacaagac aagcugugcg gaucacugau    10200

uggaaugacc aauagggcca ccugggccuc ccacauccau uuggucaucc aucguauccg    10260

aacgcugauu ggacaggaga aauacacuga cuaccuaaca gucauggaca gguauucugu    10320

ggaugcugac cugcaacugg gugagcuuau cugaaacacc aucuaacagg aauaaccggg    10380

auacaaacca cggguggaga accggacucc ccacaaccug aaaccgggau auaaaccacg    10440

gcuggagaac cggacuccgc acuuaaaaug aaacagaaac cgggauaaaa acuacggaug    10500

gagaaccgga cuccacacau ugagacagaa gaaguuguca gcccagaacc ccacacgagu    10560

uuugccacug cuaagcugug aggcagugca ggcugggaca gccgaccucc agguugcgaa    10620

aaaccugguu ucugggaccu cccaccccag aguaaaaaga acggagccuc cgcuaccacc    10680

cucccacgug gugguagaaa gacggggucu agagguuaga ggagacccuc cagggaacaa    10740

auagugggac cauauugacg ccagggaaag accggagugg uucucugcuu uuccuccaga    10800

ggucugugag cacaguuugc ucaagaauaa gcagaccuuu ggaugacaaa cacaaaacca    10860

cu                                                                   10862


<210> 9
<211> 23
<212> DNA
<213> Artificial Sequence


<220> 
<223> DNA primer

<400> 9
gctaggcaat aaacacattt gga                                            23


<210> 10
<211> 21
<212> DNA
<213> Artificial Sequence


<220> 
<223> DNA primer

<400> 10
ttcactggga tactccttcg c                                              21


<210> 11
<211> 22
<212> DNA
<213> Artificial Sequence


<220> 
<223> DNA primer

<400> 11
atcaaatacc atcttgcccc tc                                             22


<210> 12
<211> 21
<212> DNA
<213> Artificial Sequence


<220> 
<223> DNA primer

<400> 12
agtaaatcct ttgaccccac t                                              21


<210> 13
<211> 18
<212> DNA
<213> Artificial Sequence


<220> 
<223> DNA primer

<400> 13
ggcttaccgc aatgcact                                                  18


<210> 14
<211> 18
<212> DNA
<213> Artificial Sequence


<220> 
<223> DNA primer

<400> 14
cagagaacca ctccggtc                                                  18


<210> 15
<211> 493
<212> PRT
<213> Yellow fever virus


<220> 
<223> Sequence of the envelope protein of the YFV TV3111 or TV3112
      strains

<400> 15
Ala His Cys Ile Gly Ile Thr Asp Arg Asp Phe Ile Glu Gly Val His 
1               5                   10                  15      
Gly Gly Thr Trp Val Ser Ala Thr Leu Glu Gln Asp Lys Cys Val Thr 
            20                  25                  30          
Val Met Ala Pro Asp Lys Pro Ser Leu Asp Ile Ser Leu Glu Thr Val 
        35                  40                  45              
Ala Ile Asp Arg Pro Ala Glu Val Arg Lys Val Cys Tyr Asn Ala Val 
    50                  55                  60                  
Leu Thr His Val Lys Ile Asn Asp Lys Cys Pro Ser Thr Gly Glu Ala 
65                  70                  75                  80  
His Leu Ala Glu Glu Asn Glu Gly Asp Asn Ala Cys Lys Arg Thr Tyr 
                85                  90                  95      
Ser Asp Arg Gly Trp Gly Asn Gly Cys Gly Leu Phe Gly Lys Gly Ser 
            100                 105                 110         
Ile Val Ala Cys Ala Lys Phe Thr Cys Ala Lys Ser Met Ser Leu Phe 
        115                 120                 125             
Glu Val Asp Gln Thr Lys Ile Gln Tyr Val Ile Arg Ala Gln Leu His 
    130                 135                 140                 
Val Gly Ala Lys Gln Glu Asn Trp Thr Thr Asp Ile Lys Thr Leu Lys 
145                 150                 155                 160 
Phe Asp Ala Leu Ser Gly Ser Gln Glu Val Glu Phe Ile Gly Tyr Gly 
                165                 170                 175     
Lys Ala Thr Leu Glu Cys Gln Val Gln Thr Ala Val Asp Phe Gly Asn 
            180                 185                 190         
Ser Tyr Ile Ala Glu Met Glu Thr Glu Ser Trp Ile Val Asp Arg Gln 
        195                 200                 205             
Trp Ala Gln Asp Leu Thr Leu Pro Trp Gln Ser Gly Ser Gly Gly Val 
    210                 215                 220                 
Trp Arg Glu Met His His Leu Val Glu Phe Glu Pro Pro His Ala Ala 
225                 230                 235                 240 
Thr Ile Arg Val Leu Ala Leu Gly Asn Gln Glu Gly Ser Leu Lys Thr 
                245                 250                 255     
Ala Leu Thr Gly Ala Met Arg Val Thr Lys Asp Thr Asn Asp Asn Asn 
            260                 265                 270         
Leu Tyr Lys Leu His Gly Gly His Val Ser Cys Arg Val Lys Leu Ser 
        275                 280                 285             
Ala Leu Thr Leu Lys Gly Thr Ser Tyr Lys Ile Cys Thr Asp Lys Met 
    290                 295                 300                 
Phe Phe Val Lys Asn Pro Thr Asp Thr Gly His Gly Thr Val Val Met 
305                 310                 315                 320 
Gln Val Lys Val Ser Lys Gly Ala Pro Cys Arg Ile Pro Val Ile Val 
                325                 330                 335     
Ala Asp Asp Leu Thr Ala Ala Ile Asn Lys Gly Ile Leu Val Thr Val 
            340                 345                 350         
Asn Pro Ile Ala Ser Thr Asn Asp Asp Glu Val Leu Ile Glu Val Asn 
        355                 360                 365             
Pro Pro Phe Gly Asp Ser Tyr Ile Ile Val Gly Arg Gly Asp Ser Arg 
    370                 375                 380                 
Leu Thr Tyr Gln Trp His Lys Glu Gly Ser Ser Ile Gly Lys Leu Phe 
385                 390                 395                 400 
Thr Gln Thr Met Lys Gly Val Glu Arg Leu Ala Val Met Gly Asp Thr 
                405                 410                 415     
Ala Trp Asp Phe Ser Ser Ala Gly Gly Phe Phe Thr Ser Val Gly Lys 
            420                 425                 430         
Gly Ile His Thr Val Phe Gly Ser Ala Phe Gln Gly Leu Phe Gly Gly 
        435                 440                 445             
Leu Asn Trp Ile Thr Lys Val Ile Met Gly Ala Val Leu Ile Trp Val 
    450                 455                 460                 
Gly Ile Asn Thr Arg Asn Met Thr Met Ser Met Ser Met Ile Leu Leu 
465                 470                 475                 480 
Gly Val Ile Met Met Phe Leu Ser Leu Gly Val Gly Ala 
                485                 490             

<210> 16
<211> 224
<212> PRT
<213> Yellow fever virus


<220> 
<223> Sequence of the NS2a protein of the YFV TV3111 or TV3112 strains

<400> 16
Gly Glu Ile His Ala Val Pro Phe Gly Leu Val Ser Met Met Ile Ala 
1               5                   10                  15      
Met Glu Val Val Leu Arg Lys Arg Gln Gly Pro Lys Gln Met Leu Val 
            20                  25                  30          
Gly Gly Val Val Leu Leu Gly Ala Met Leu Val Gly Gln Val Thr Leu 
        35                  40                  45              
Leu Asp Leu Leu Lys Leu Thr Val Ala Val Gly Leu His Phe His Glu 
    50                  55                  60                  
Val Asn Asn Gly Gly Asp Ala Met Tyr Met Ala Leu Ile Ala Ala Phe 
65                  70                  75                  80  
Ser Ile Arg Pro Gly Leu Leu Ile Gly Phe Gly Leu Arg Thr Leu Trp 
                85                  90                  95      
Ser Pro Arg Glu Arg Leu Val Leu Thr Leu Gly Ala Ala Met Val Glu 
            100                 105                 110         
Ile Ala Leu Gly Gly Val Met Gly Gly Leu Trp Lys Tyr Leu Asn Ala 
        115                 120                 125             
Val Ser Leu Cys Ile Leu Thr Ile Asn Ala Val Ala Ser Arg Lys Ala 
    130                 135                 140                 
Ser Asn Thr Ile Leu Pro Leu Met Ala Leu Leu Thr Pro Val Thr Met 
145                 150                 155                 160 
Ala Glu Val Arg Leu Ala Ala Met Phe Phe Cys Ala Val Val Ile Ile 
                165                 170                 175     
Gly Val Leu His Gln Asn Phe Lys Asp Thr Ser Met Gln Lys Thr Ile 
            180                 185                 190         
Pro Leu Val Ala Leu Thr Leu Thr Ser Tyr Leu Gly Leu Thr Gln Pro 
        195                 200                 205             
Phe Leu Gly Leu Cys Ala Phe Leu Ala Thr Arg Ile Phe Gly Arg Arg 
    210                 215                 220                 



<210> 17
<211> 378
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA Sequence coding for the NS4a protein of the YFV TV3112 strain

<400> 17
ggagcugcug aagugcuagu ugugcugagu gaacucccug auuuccuggc uaaaaagggu      60

ggagaggcaa uggauaccau caguguguuu cuccacucug aggaaggcuc uagggcuuac     120

cgcaaugcac uaucaaugau gccugaggca augacaauag ucaugcuguu uauacuggcu     180

ggacuacuga caucgggaau ggucaucuuu uucaugucuc ccaaaggcau caguagaaug     240

ucuauggcga ugggcacaau ggccggcugu ggauaucuca uguuccuugg aggcgucaaa     300

cccacucaca ucuccuauau caugcucaua uucuuugucc ugaugguggu ugugaucccc     360

gagccagggc aacaaagg                                                   378


<210> 18
<211> 1479
<212> RNA
<213> Yellow fever virus


<220> 
<223> RNA Sequence coding for the envelope protein of the YFV TV3112
      strain

<400> 18
gcucacugca uuggaauuac ugacagggau uucauugagg gggugcaugg aggaacuugg      60

guuucagcua cccuggagca agacaagugu gucacuguua uggccccuga caagccuuca     120

uuggacaucu cacuagagac aguagccauu gauagaccug cugaggugag gaaagugugu     180

uacaaugcag uucucacuca ugugaagauu aaugacaagu gccccagcac uggagaggcc     240

caccuagcug aagagaacga aggggacaau gcgugcaagc gcacuuauuc ugauagaggc     300

uggggcaaug gcuguggccu auuugggaaa gggagcauug uggcaugcgc caaauucacu     360

ugugccaaau ccaugaguuu guuugagguu gaucagacca aaauucagua ugucaucaga     420

gcacaauugc auguuggggc caagcaggaa aauuggacua ccgacauuaa gacucucaag     480

uuugaugccc ugucaggcuc ccaggaaguc gaguucauug gguauggaaa agcuacacug     540

gaaugccagg ugcaaacugc gguggacuuu gguaacaguu acaucgcuga gauggaaaca     600

gagagcugga uaguggacag acagugggcc caggacuuga cccugccaug gcagagugga     660

aguggcgggg uguggagaga gaugcaucau cuugucgaau uugaaccucc gcaugccgcc     720

acuaucagag uacuggcccu gggaaaccag gaaggcuccu ugaaaacagc ucuuacuggc     780

gcaaugaggg uuacaaagga cacaaaugac aacaaccuuu acaaacuaca ugguggacau     840

guuucuugca gagugaaauu gucagcuuug acacucaagg ggacauccua caaaauaugc     900

acugacaaaa uguuuuuugu caagaaccca acugacacug gccauggcac uguugugaug     960

caggugaaag ugucaaaagg agcccccugc aggauuccag ugauaguagc ugaugaucuu    1020

acagcggcaa ucaauaaagg cauuuugguu acaguuaacc ccaucgccuc aaccaaugau    1080

gaugaagugc ugauugaggu gaacccaccu uuuggagaca gcuacauuau cguugggaga    1140

ggagauucac gucucacuua ccaguggcac aaagagggaa gcucaauagg aaaguuguuc    1200

acucagacca ugaaaggcgu ggaacgccug gccgucaugg gagacaccgc cugggauuuc    1260

agcuccgcug gaggguucuu cacuucgguu gggaaaggaa uucauacggu guuuggcucu    1320

gccuuucagg ggcuauuugg cggcuugaac uggauaacaa aggucaucau gggggcggua    1380

cuuauauggg uuggcaucaa cacaagaaac augacaaugu ccaugagcau gaucuuguua    1440

ggagugauca ugauguuuuu gucucuagga guuggggcg                           1479


