                         SEQUENCE LISTING

<110>  The Trustees of Princeton University
 
<120>  METHODS FOR PREDICTING GENOMIC VARIATION EFFFECTS ON GENE 
       TRANSCRIPTION

<130>  P48-06010.PCT

<160>  22    

<170>  PatentIn version 3.5

<210>  1
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  1
agggccatta cactctggtg ctttaatcaa atcagtctca gtccgtgtgg tgaggacagg       60

aacaaggcgg aggtaaagaa gaagaaaaca gattcgagga tgggggcgac cccttctgtc      120

ttcagccaat cacagaaatt ctctgagtga atgtatctgt tgctgggtaa agagggaaag      180

agccggggtg agaaggtgga aggattcact gggcccccag gagaggccag                 230


<210>  2
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  2
agggccatta cactctggtg ctttaatcaa atcagtctca gtccgtgtgg tgaggacagg       60

aacaaggcgg aggtaaagaa gaagaaaaca gattcgagga tgggggcgac ccctgctgtc      120

ttcagccaat cacagaaatt ctctgagtga atgtatctgt tgctgggtaa agagggaaag      180

agccggggtg agaaggtgga aggattcact gggcccccag gagaggccag                 230


<210>  3
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  3
tcctccccca ccccccagac tcccggggcc tctgcacctg gggacactgg acacatatgt       60

gcccatgatg atgaggacgg tgcccacgag gaagcccacc aggccgatgg ccagacccag      120

ggcacagacc agggtctcca tggcatctgg tggtggaata ggcacctgga gctctaggag      180

agaaaggaag gagttggtgg tatatgaaag gattctagag taaaggaaac                 230


<210>  4
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  4
tcctccccca ccccccagac tcccggggcc tctgcacctg gggacactgg acacatatgt       60

gcccatgatg atgaggacgg tgcccacgag gaagcccacc aggccgatgg ccaggcccag      120

ggcacagacc agggtctcca tggcatctgg tggtggaata ggcacctgga gctctaggag      180

agaaaggaag gagttggtgg tatatgaaag gattctagag taaaggaaac                 230


<210>  5
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  5
ttatgaattc aagtttcaag atcctgacca agtaggaagt actcagcttc ctgtgtgatg       60

atggagaatt ggctccagtt tcacagtctt tcaaaatgac aagaaaggga caaagttctt      120

ctttttgtgt ggtttggtgc tcatgaatgg ccacaacgcc caccagtggc cacttcctgg      180

aagccaagtt aactgcgagg attttctctg ctcactctga gcctcttgag                 230


<210>  6
<211>  227
<212>  DNA
<213>  Homo sapiens

<400>  6
ttatgaattc aagtttcaag atcctgacca agtaggaagt actcagcttc ctgtgtgatg       60

atggagaatt ggctccagtt tcacagtctt tcaaaatgac aagaaaggga caaagttctt      120

tttgtgtggt ttggtgctca tgaatggcca caacgcccac cagtggccac ttcctggaag      180

ccaagttaac tgcgaggatt ttctctgctc actctgagcc tcttgag                    227


<210>  7
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  7
gtttccctgg gtcacacatt cactcacggc ttctcttggc tgggagtggg ggttcccttg       60

ggtctgtgtt gctcctgggt gggctgacat cctgccctgc ttttctacat tctctgtggg      120

ttgaacagtt tctctgatca gtcctaatgt gagcacctgg atgttttagt tgaaggtgct      180

gaatttactc accccttttg tccatctccg tgagtgccac accctgtagc                 230


<210>  8
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  8
gtttccctgg gtcacacatt cactcacggc ttctcttggc tgggagtggg ggttcccttg       60

ggtctgtgtt gctcctgggt gggctgacat cctgccctgc ttttctacat tctccgtggg      120

ttgaacagtt tctctgatca gtcctaatgt gagcacctgg atgttttagt tgaaggtgct      180

gaatttactc accccttttg tccatctccg tgagtgccac accctgtagc                 230


<210>  9
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  9
cctgtgaaac aacgaacccc ccggggagaa acgaacaact ccagactcgc cgcctgaaga       60

gctgtaactc tcacttcgaa ggtctgcagc ttcgctcctg agtcagtgaa accatgaacc      120

caccggaagg aagaaactct gaacacatcc aaacatcaga aggaacaaac tccggacacg      180

cagcctttaa gaattgtaac actcaccgcg agggtccgtg gcttcattct                 230


<210>  10
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  10
cctgtgaaac aacgaacccc ccggggagaa acgaacaact ccagactcgc cgcctgaaga       60

gctgtaactc tcacttcgaa ggtctgcagc ttcgctcctg agtcagtgaa accacgaacc      120

caccggaagg aagaaactct gaacacatcc aaacatcaga aggaacaaac tccggacacg      180

cagcctttaa gaattgtaac actcaccgcg agggtccgtg gcttcattct                 230


<210>  11
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  11
cacagaaaaa gcctggaaaa ctatagggtt ttctgctgac ctcccacact caccatggac       60

agtcagtacc ctgcactggc ccgtgtcgta cccaagcaga gtgtgcttga aaatcggatg      120

tatattagta gaccccgtgc tcagcgggta cagtttagaa agggaagtta acttatctgt      180

caattagtaa gttaacaaca cacaaagtgt actatgtttt attaatcaaa                 230


<210>  12
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  12
cacagaaaaa gcctggaaaa ctatagggtt ttctgctgac ctcccacact caccatggac       60

agtcagtacc ctgcactggc ccgtgtcgta cccaagcaga gtgtgcttga aaattggatg      120

tatattagta gaccccgtgc tcagcgggta cagtttagaa agggaagtta acttatctgt      180

caattagtaa gttaacaaca cacaaagtgt actatgtttt attaatcaaa                 230


<210>  13
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  13
gtgggtgttt tcttggcact gatgcaacag tgttcaaaac tggacattct gaacttttgg       60

gggaatccta aatcctaata actccaatat acttgattgc aatgcccatg tgtatgctgt      120

tattttgtaa tagtttacta agaaacttta cttcctgagc aaccacagtc cctgtcctgg      180

agctcatgcc aaagagttaa taattatgca ggcaccacag gaacaaggtc                 230


<210>  14
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  14
gtgggtgttt tcttggcact gatgcaacag tgttcaaaac tggacattct gaacttttgg       60

gggaatccta aatcctaata actccaatat acttgattgc aatgcccatg tgtacgctgt      120

tattttgtaa tagtttacta agaaacttta cttcctgagc aaccacagtc cctgtcctgg      180

agctcatgcc aaagagttaa taattatgca ggcaccacag gaacaaggtc                 230


<210>  15
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  15
gaagcttcca aggatgtgca ggttatccaa aaatttaatt gcatgccagt gtttattttt       60

gttaaactgg cttacttgct tccatcagaa gtaagaaatg tagatgaggt ctgtgttaca      120

taaatgtgca ttgaaacacc agtgtcaatc agaaaaatta gaaaaatctt tgttttcaga      180

ttctctttgc atttattggt aatttaagca ctaaagaatt attcatgtgt                 230


<210>  16
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  16
gaagcttcca aggatgtgca ggttatccaa aaatttaatt gcatgccagt gtttattttt       60

gttaaactgg cttacttgct tccatcagaa gtaagaaatg tagatgaggt ctgtattaca      120

taaatgtgca ttgaaacacc agtgtcaatc agaaaaatta gaaaaatctt tgttttcaga      180

ttctctttgc atttattggt aatttaagca ctaaagaatt attcatgtgt                 230


<210>  17
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  17
tccatatatt tggtattttc cacatatttt catgttattt atttctaatg taattgattt       60

ctaatgaatt aaattagaat cacatgagaa tgagtcacct taccttttaa atttgttgct      120

ctgtcttggt aaatgcttca catggactta aaaatgtgta ttgtaccatt ttggggtggg      180

atgttctaca aatgtcaact aggtcaaatt ggttgatttt gctgttcaag                 230


<210>  18
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  18
tccatatatt tggtattttc cacatatttt catgttattt atttctaatg taattgattt       60

ctaatgaatt aaattagaat cacatgagaa tgagtcacct taccttttaa atttattgct      120

ctgtcttggt aaatgcttca catggactta aaaatgtgta ttgtaccatt ttggggtggg      180

atgttctaca aatgtcaact aggtcaaatt ggttgatttt gctgttcaag                 230


<210>  19
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  19
aaagagaagg tgcagtttca gatggtctac aataaagctg tccagttagc cctcaacaaa       60

ggcataacct ccatttgcaa aggtatgaag gtcataaaag tcatgacata tgtcgggaac      120

aatctaatca cagcaactag taaggaaagg cacttgattg gacaactctg agttattcag      180

ggaagccatc cttacccatt gagaccaggt ggctgtagtt ctccagcatc                 230


<210>  20
<211>  230
<212>  DNA
<213>  Homo sapiens

<400>  20
aaagagaagg tgcagtttca gatggtctac aataaagctg tccagttagc cctcaacaaa       60

ggcataacct ccatttgcaa aggtatgaag gtcataaaag tcatgacata tgtcaggaac      120

aatctaatca cagcaactag taaggaaagg cacttgattg gacaactctg agttattcag      180

ggaagccatc cttacccatt gagaccaggt ggctgtagtt ctccagcatc                 230


<210>  21
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Cloning Site

<400>  21
tggccggtac ctgag                                                        15


<210>  22
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Cloning site

<400>  22
atcaagatct ggcct                                                        15


