                         SEQUENCE LISTING

<110>  Charit - Universittsmedizin Berlin
 
<120>  METHOD FOR DETERMINING DERMATOPHYTES

<130>  XII 2200/17WO

<150>  EP18157464.1
<151>  2018-02-19

<160>  49    

<170>  PatentIn version 3.5

<210>  1
<211>  24
<212>  DNA
<213>  Unknown

<220>
<223>  primer

<400>  1
actcctccaa actacaccca gcaa                                              24


<210>  2
<211>  26
<212>  DNA
<213>  Trichophyton rubrum

<400>  2
agctctgatc tcaccggtga cgatag                                            26


<210>  3
<211>  22
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  3
tgccctcagc aagagttgca at                                                22


<210>  4
<211>  19
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  4
gcttggaggg ctggggagt                                                    19


<210>  5
<211>  20
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  5
tcactctcgt cgttgctgcc                                                   20


<210>  6
<211>  19
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  6
cctayggcct cctgatcgt                                                    19


<210>  7
<211>  18
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  7
ggcagccgtg gaggagca                                                     18


<210>  8
<211>  18
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  8
tggtggactt tggtggct                                                     18


<210>  9
<211>  15
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  9
gcgcycgccr gagga                                                        15


<210>  10
<211>  21
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  10
ccggaaccaa gagatccgtt g                                                 21


<210>  11
<211>  24
<212>  DNA
<213>  unknown

<220>
<223>  primer

<400>  11
cacattaact tggtcgtyat cggc                                              24


<210>  12
<211>  18
<212>  DNA
<213>  Unknown

<220>
<223>  primer

<400>  12
gaacttctca atggtacg                                                     18


<210>  13
<211>  32
<212>  DNA
<213>  Unknown

<220>
<223>  probe

<400>  13
gccrccgtct ctgccgtcac tcctccaaac ta                                     32


<210>  14
<211>  28
<212>  DNA
<213>  Unknown

<220>
<223>  probe

<400>  14
gagggcaccg gcgagtacca gtacagca                                          28


<210>  15
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  probe

<400>  15
tccctgcctc cctctggcaa cccaa                                             25


<210>  16
<211>  26
<212>  DNA
<213>  Unknown

<220>
<223>  probe

<400>  16
caaattcggc gtcaagaacg agggcc                                            26


<210>  17
<211>  31
<212>  DNA
<213>  Unknown

<220>
<223>  probe

<400>  17
cgataccacc gcacttgtag atcaagtgac c                                      31


<210>  18
<211>  33
<212>  DNA
<213>  Unknown

<220>
<223>  probe

<400>  18
gtaatgttat agtcagtttc tgtgtaattc ggt                                    33


<210>  19
<211>  768
<212>  DNA
<213>  Trichophyton verrucosum

<400>  19
atgaaggtca ctctcgtcgt tgctgccctc gcggccgccg tctctgccgt cactcctcca       60

aactactccc tgcctccctc tggcaacccc atcggcaccc caggcctcca cgagaaggtc      120

cctgtcgaca agccctacgc catcacctgg caggcaacca ccgagagcca tgtctccatc      180

atgctcctcc acggctgccc caagaactgc aacccagttc aaactcttgc tgagaacatc      240

ccgaacaccg gcagcctctc ttggactcct agttctgacc tcaccggtga cgactcctac      300

ggcctcgtga tcgtcgtcga gggcaccggc cagtaccagt acagcaccaa cttcggcatc      360

gagaaccaca gccccaagcc acagccacca aagtccacca cgccagccga gaagcctacc      420

tggactcccc agccctccaa gccagtcacc cacatcgtcg aggcttcctc cagcactccc      480

gtcccctccg gcggcgtcat cactctcacc acctccatct gcccgccatc tgctaccact      540

tccactgtcc ccggcgtgcc ccagccaact ggcagcgcgc cagtccccgg cactcctcac      600

ccaaccggcg gcaaccctgg cccagctcca gctccatctg gctccggtgc tcccgtgcca      660

ccaccagcct cgaccaacac ccctccacca ttcaacaacg gtgccggccg cgtcggcgct      720

ggcttcggtg ccgctctcct cgttgtcgcc gctgcttttg ccatgtaa                   768


<210>  20
<211>  762
<212>  DNA
<213>  Trichophyton tonsurans

<400>  20
atgaagttca ctctcgtcgt tgctgccttc gcggccaccg tctctgccgt cactcctcca       60

aactacaccc agcaaccctc cggcaacccc atcactactc cgggcctcgg cgagcgcgtc      120

ccagtcggcc aggtcttcac catctcctgg aagccaacca cccagaagcc cgtctccatc      180

atgctcctcc acggctgccc ccagaactgc aacccaattg caactcttgc tgagggcatc      240

cccaactccg gctctctccc ttggactcct gaagctgatc tcgtcgatga taacgcctac      300

ggcctcctga tcgttgtcga gggcaccggc gagtaccagt acagcaccca attcggcgtc      360

aagaacgacg gccccaagcc acagccacca aagtccacca agccagccga gaagcctacc      420

tgggttcccc agccctccaa gccagtcacc cacatcatcg acaccgcctc cagcactccc      480

gtcccctcca gcggcgtcgt caccctcacc acctctgtct gcccaccatc tgccaccacc      540

gtccccggtg tgccccagcc aaccggcagc atgcccatcc ccggtactcc tcagccaact      600

ggcggcaacc cgggcccagc tccagctccg tctggcacca gtgctcccat gccaccacca      660

ggctcgacca acacccctcc accattcaac aacggtgccg gccgcgtcgg cgctggtctc      720

ggtgccgctt tcctcgttct cgccgctgct tttgccatgt aa                         762


<210>  21
<211>  795
<212>  DNA
<213>  Trichophyton equinum

<400>  21
atgaagttca ctctcgtcgt tgctgccttc gcggccaccg tctctgccgt cactcctcca       60

aactacaccc agcaaccctc cggcaacccc atcactactc cgggcctcgg cgagcgcgtc      120

acagtcggcc aggtcttcac catctcctgg aagccaacca cccagaagcc cgtctccatc      180

atgctcctcc acggctgccc ccagaactgc aacccaattg caactcttgc tgagggcatc      240

cccaactccg gctctctccc ttggactcct gaagctgatc tcgtcgatga taacgcctac      300

ggcctcctga tcgttgtcga gggcaccggc gagtaccagt acagcaccca attcggcgtc      360

aagaacgacg gccccaagcc acagccacca aagtccacca agccagccga gaagcctacc      420

tgggttcccc agccctccaa gccagtcacc cacatcatcg acaccgcctc cagcactccc      480

gtcccctcca gcggcgtcgt caccctcacc acctccgtct gcccaccatc tgccaccacc      540

gtccccggtg tgccccagcc aaccggcagc atgcccatcc ccggtactcc tcagccaacc      600

ggcagcgtgc ccatccctgg cactcagcca actggcggca acccgggccc agctccagct      660

ccgtctggca ccagtgctcc catgccacca ccaggctcga ccaacacccc tccaccattc      720

aacaacggtg ccggccgcgt cggcgctggt ctcggtgccg ctttcctcgc tctcgccgct      780

gcttttgcca tgtaa                                                       795


<210>  22
<211>  798
<212>  DNA
<213>  Trichophyton interdigitale

<400>  22
atgaagttca ctctcgtcgt tgctgccttc gcggccaccg tctctgccgt cactcctcca       60

aactacaccc agcaaccctc cggcaacccc atcactgctc cgggcctcgg cgagcgcgtc      120

ccagtcggcc aggtcttcac catctcctgg cagccaacca cccagaagcc cgtctccctc      180

atgctcctcc acggctgccc cctgaactgc aacccaattg caactcttgc tgagggcatc      240

ccaaactccg gctctctccc ttggactcct gaagctggtc tcgtcgatga tgacgcctac      300

ggcctcctga tcgttgtcga gggcaccggc gagtaccagt acagcaccaa attcggcgtc      360

aagaacgagg gccccaagcc acagccacca aagtccacca agccagccga gaagcctacc      420

tgggttcccc agccctccaa gccagtcacc cacatcatcg acaccgcctc cagcactccc      480

gtcccctcca gcggcgtcgt caccctcacc acctccgtct gcccaccatc tgccaccaca      540

gtccccggtg tgccccagcc aaccggcagc atgcccatcc ccggtactcc tcagccaacc      600

ggcagcgtgc ccatccctgg cactcctcag ccaactggcg gcaacccggg cccagctcca      660

gctccatctg gcaccactgc tcccatgcca ccaccaggct cgaccaacac ccctccacca      720

ttcaacaacg gtgccggccg cgtcggcgct ggtctcggtg ccgctttcct cgttctcgcc      780

gctgcttttg ccatgtaa                                                    798


<210>  23
<211>  768
<212>  DNA
<213>  Trichophyton benhamiae

<400>  23
atgaaggtca ctctcgtcgt tgctgccctc gcggccgccg tctctgccgt cactcctcca       60

aactactccc agcctccctc cggcaacccc atcggcaccc caggcctcca cgagaaggtc      120

cctgtcggcc agccctacac catcacctgg caggcaacca ccgagagcca tgtctccatc      180

atgctcctcc acggctgccc caagaactgc aacccagttc aaactcttgc tgagaacatc      240

ccgaactccg gcagcctctc ttggactccc aagtccgacc tcaccggtga cgactcctac      300

ggcctcatga tcgtcgtcga gggcaccggc cagtaccagt acagcaccaa cttcggcatc      360

gagaaccaca gccccaagcc acagccacca aagtccacca cgccagtcga gaagcctacc      420

tggactcccc agccctccaa gccagtcacc cacatcgtcg agacttcctc cagcactccc      480

gtcccctccg gcggcgtcat cactctcacc acctccatct gcccgccatc tgctaccact      540

tccactgtcc ccggcgtgcc ccagccaact ggcagcgcgc cagtacccgg cactcctcac      600

ccaaccggcg gcaaccctgg accagctcca gctccatctg gctccggtgc tcccgtgcca      660

ccaccagcct cgaccaacac ccctccacca ttcaacaacg gtgccggccg cgttggcgct      720

ggtttcggtg ccgctctcct cgttgtcgcc gctgcttttg ccatgtaa                   768


<210>  24
<211>  759
<212>  DNA
<213>  Trichophyton rubrum

<400>  24
atgaagctca ctctcgtcgt tgctgccctc gcggccgccg tctctgccgt cactcctcca       60

aactacagcc agtctccctc cggcaacccc atcgcttccc cgggcctcca cgagcgcgtc      120

cctgtcagca agccctacac catcacctgg caggcaacca cctcgagcca cgtctccatc      180

atgctcctcc acggctgccc caagaactgc gaaccagttg caacgcttgc ggagaacatc      240

cccaactccg gccaccactc ctggactcct agctctgatc tcaccggtga cgatagctac      300

ggcctcatga ttgtcgtcga gggcaccggc cagtaccagt acagcaccaa cttcggcatc      360

gagaaccaca gccccaagcc acagccacca aagtccacca cgccagccga gaagcctacc      420

tggactcccc agccctccaa gccagtcacc catatcatcg agacctccag cactcccgtc      480

ccctccggcg gcgtcatcac tctcaccacc tccatctgcc ctccatccgg caccgccgtc      540

cccggtgtgc cccatccaac cggcagcgtg cctgtccccg gcactcctca cccaaccggc      600

ggcaacccag gcccagctcc agctccatct ggctctggtg ctcccatgcc accaccagcc      660

tcgaccaaca cccctccacc attcaacaac ggtgccggcc gcgtcggcgc tggtctcggt      720

gccgctctcc tcgttgtcgc cgctgctttt gccatgtaa                             759


<210>  25
<211>  759
<212>  DNA
<213>  Trichophyton soudanense

<400>  25
atgaagctca ctctcgtcgt tgctgccctc gcggccgccg tctctgccgt cactcctcca       60

aactacagcc agtctccctc cggcaacccc atcgcttccc cgggcctcca cgagcgcgtc      120

cctgtcagca agccctacac catcacctgg caggcaacca cctcgagcca cgtctccatc      180

atgctcctcc acggctgccc caagaactgc gaaccagttg caacgcttgc ggagaacatc      240

cccaactccg gccaccactc ctggactcct agctctgatc tcaccggtga cgatagctac      300

ggcctcatga ttgtcgtcga gggcaccggc cagtaccagt acagcaccaa cttcggcatc      360

gagaaccaca gcccccagcc acagccacca aagtccacca cgccagccga gaagcctacc      420

tggactcccc agccctccaa gccagtcacc catatcatcg agacctccag cactcccgtc      480

ccctccggcg gcgtcatcac tctcaccacc tccatctgcc ctccatccgg caccgccgtc      540

cccggtgtgc cccatccaac cggcagcgtg cctgtccccg gcactcctca cccaaccggc      600

ggcaacccag gcccagctcc agctccatct ggctctggtg ctcccatgcc accaccagcc      660

tcgaccaaca cccctccacc attcaacaac ggtgccggcc gcgtcggcgc tggtctcggt      720

gccgctctcc tcgttgtcgc cgctgctttt gccatgtaa                             759


<210>  26
<211>  759
<212>  DNA
<213>  Trichophyton violaceum

<400>  26
atgaagctca ctctcgtcgt tgctgccctc gcggccgccg tctctgccgt cactcctcca       60

aactacagcc agtctccctc cggcaacccc atcgcttccc cgggcctcca cgagcgcgtc      120

cctgtcagca agccctacac catcacctgg caggcaacca cctcgagcca cgtctccatc      180

atgctcctcc acggctgccc caagaactgc gaaccagttg caacgcttgc ggagaacatc      240

cccaactccg gccaccactc ctggactcct agctctgatc tcaccggtga cgatagctac      300

ggcctcatga ttgtcgtcga gggcaccggc cagtaccagt acagcaccaa tttcggcatc      360

gagaaccaca gccccaagcc acagccacca aagtccacca cgccagccga gaagcctacc      420

tggactcccc agccctccaa gccagtcacc catatcatcg agacctccag cactcccgtc      480

ccctccggcg gcgtcatcac tctcaccacc tccatctgcc ctccatccgg caccgccgtc      540

cccggtgtgc cccatccaac cggcagcgtg cctgtccccg gcactcctca cccaaccggc      600

ggcaacccag gcccagctcc agctccatct ggctctggtg ctcccatgcc accaccagcc      660

tcgaccaaca cccctccacc attcaacaac ggtgccggcc gcgtcggcgc tggtctcggt      720

gccgctctcc tcgttgtcgc cgctgctttt gccatgtaa                             759


<210>  27
<211>  617
<212>  DNA
<213>  Trichophyton rubrum

<400>  27
atcattaacg cgcaggccgg aggctggccc cccacgatag ggaccgacgt tccatcaggg       60

gtgagcagac gtgcgccggc cgtacgcccc cattcttgtc tacctcaccc ggttgcctcg      120

gcgggccgcg ctccccctgc cagggagagc cgtccggcgg gccccttctg ggagcctcga      180

gccggaccgc gcccgccgga ggacagacac caagaaaaaa ttctctgaag agctgtcagt      240

ctgagcgttt agcaagcaca atcagttaaa actttcaaca acggatctct tggttccggc      300

atcgatgaag aacgcagcga aatgcgataa gtaatgtgaa ttgcagaatt ccgtgaatca      360

tcgaatcttt gaacgcacat tgcgccctct ggcattccgg ggggcatgcc tgttcgagcg      420

tcatttcaac ccctcaagcc cggcttgtgt gatggacgac cgtccggccc ctcccttcgg      480

gggcgggacg cgcccgaaaa gcagtggcca ggccgcgatt ccggcttcct aggcgaatgg      540

gcagccaatt cagcgccctc aggaccggcc gccctggccc caatctttat atatatatat      600

atcttttcag gttgacc                                                     617


<210>  28
<211>  737
<212>  DNA
<213>  Trichophyton rubrum

<400>  28
cacattaact tggtcgttat cggccacgtc gattccggca aatccaccac tactggtaag       60

ccagccacca gatacctcta gccaggcacc gaattacaca gaaactgact ataacattac      120

aggtcacttg atctacaagt gcggtggtat cgaccagcgt accattgaga agttcgagaa      180

ggtaaataac cccccttttt tgaccctgct gtctccgttc tgttgcacaa ttttccccct      240

tcatcccact acaggtgaaa ttttggtgct gctggtggga tgtggcttgg cactcgcttg      300

ggcagcaaaa tccacacccc accaacatca aacatgcagc catcgctcca ggcaacgatc      360

gagcctcatg tcatgtttgg gatttgcttt tttctaagga tcgatgctaa caaggtacct      420

gtaggaagcc gaagagttgg gcaagaagtc cttcaagtac gcttgggttc ttgacaagct      480

caaggccgag cgtgagcgtg gtatcaccat cgatatcgcc ctctggaagt tcgagacccc      540

caagtacaat gtcaccgtca ttggtatgtt tctttgcctt gttccctcat gtggttgtac      600

catatctaac gagagtagac gcccccggtc accgtgactt catcaagaac atgatcactg      660

gtacctccca ggctgactgc gctattctca tcattgctgc cggtactggt gagttcgagg      720

ctggtatctc caaggat                                                     737


<210>  29
<211>  20
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  29
tcactctcgt cgctgctgcc                                                   20


<210>  30
<211>  20
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  30
tcactctcgt cgtcgctgcc                                                   20


<210>  31
<211>  32
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  31
gccgtcgcct ctgccgtcac tcctccaaac ta                                     32


<210>  32
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  32
acccagcaac cctccggcaa cccca                                             25


<210>  33
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  33
tcccagcaac cctccggcaa cccca                                             25


<210>  34
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  34
gcccagcaac cctccggcaa cccca                                             25


<210>  35
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  35
agccaggatc cctccggcaa cccct                                             25


<210>  36
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  36
tcccagcctc cctccggcaa cccca                                             25


<210>  37
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  37
tccctgcctc cctctggcaa cccca                                             25


<210>  38
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  38
agccagtctc cctccggcaa cccca                                             25


<210>  39
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  39
tcccagtcgc catccggcaa cccca                                             25


<210>  40
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  40
tccaactctc catccggcaa cccca                                             25


<210>  41
<211>  25
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  41
tccaactcgc cctccggcaa cccca                                             25


<210>  42
<211>  19
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  42
cctacggcct cgtgatcgt                                                    19


<210>  43
<211>  19
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  43
cctacggcct catgatcgt                                                    19


<210>  44
<211>  19
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  44
gctacggcct catgattgt                                                    19


<210>  45
<211>  28
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  45
gagggcaccg gccagtacca gtacagca                                          28


<210>  46
<211>  26
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  46
ccaattcggc gtcaagaacg agggcc                                            26


<210>  47
<211>  26
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  47
caacttcggc atcgagaaca acagcc                                            26


<210>  48
<211>  26
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  48
caacttcggc gtcgagaacc acagcc                                            26


<210>  49
<211>  26
<212>  DNA
<213>  Unknown

<220>
<223>  PCR target

<400>  49
caatttcggc atcgagaacc acagcc                                            26


