                         SEQUENCE LISTING

<110>  CHILDREN'S HOSPITAL MEDICAL CENTER
 
<120>  COMPOSITIONS AND METHODS FOR DETERMINING AVIAN INFLUENZA VIRUS 
       SUSCEPTABILTY

<130>  0713197

<150>  62/622,476
<151>  2018-01-18

<160>  3     

<170>  PatentIn version 3.5

<210>  1
<211>  226
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  HA1 Amino acid sequence

<400>  1

Cys Ser Lys Gly Lys Arg Thr Val Asp Leu Gly Gln Cys Gly Leu Leu 
1               5                   10                  15      


Gly Thr Ile Thr Gly Pro Pro Gln Cys Asp Gln Phe Leu Glu Phe Ser 
            20                  25                  30          


Ala Asp Leu Ile Ile Glu Arg Arg Glu Gly Ser Asp Val Cys Tyr Pro 
        35                  40                  45              


Gly Lys Phe Val Asn Glu Glu Ala Leu Arg Gln Ile Leu Arg Glu Ser 
    50                  55                  60                  


Gly Gly Ile Asp Lys Glu Thr Met Gly Phe Thr Tyr Asn Gly Ile Arg 
65                  70                  75                  80  


Thr Asn Gly Val Thr Ser Ala Cys Lys Arg Ser Gly Ser Ser Phe Tyr 
                85                  90                  95      


Ala Glu Met Lys Trp Leu Leu Ser Asn Thr Asp Asn Ala Ala Phe Pro 
            100                 105                 110         


Gln Met Thr Lys Ser Tyr Lys Asn Thr Arg Lys Ser Pro Ala Ile Ile 
        115                 120                 125             


Val Trp Gly Ile His His Ser Val Ser Thr Ala Glu Gln Thr Lys Leu 
    130                 135                 140                 


Tyr Gly Ser Gly Asn Lys Leu Val Thr Val Gly Ser Ser Asn Tyr Gln 
145                 150                 155                 160 


Gln Ser Phe Val Pro Ser Pro Gly Ala Arg Pro Gln Val Asn Gly Leu 
                165                 170                 175     


Ser Gly Arg Ile Asp Phe His Trp Leu Ile Leu Asn Pro Asn Asp Thr 
            180                 185                 190         


Val Thr Phe Ser Phe Asn Gly Ala Phe Ile Ala Pro Asp Arg Ala Ser 
        195                 200                 205             


Phe Leu Arg Gly Lys Ser Met Gly Ile Gln Ser Gly Val Gln Val Asp 
    210                 215                 220                 


Ala Asn 
225     


<210>  2
<211>  560
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Full HA protein

<400>  2

Met Asn Thr Gln Ile Leu Val Phe Ala Leu Ile Ala Ile Ile Pro Thr 
1               5                   10                  15      


Asn Ala Asp Lys Ile Cys Leu Gly His His Ala Val Ser Asn Gly Thr 
            20                  25                  30          


Lys Val Asn Thr Leu Thr Glu Arg Gly Val Glu Val Val Asn Ala Thr 
        35                  40                  45              


Glu Thr Val Glu Arg Thr Asn Ile Pro Arg Ile Cys Ser Lys Gly Lys 
    50                  55                  60                  


Arg Thr Val Asp Leu Gly Gln Cys Gly Leu Leu Gly Thr Ile Thr Gly 
65                  70                  75                  80  


Pro Pro Gln Cys Asp Gln Phe Leu Glu Phe Ser Ala Asp Leu Ile Ile 
                85                  90                  95      


Glu Arg Arg Glu Gly Ser Asp Val Cys Tyr Pro Gly Lys Phe Val Asn 
            100                 105                 110         


Glu Glu Ala Leu Arg Gln Ile Leu Arg Glu Ser Gly Gly Ile Asp Lys 
        115                 120                 125             


Glu Thr Met Gly Phe Thr Tyr Asn Gly Ile Arg Thr Asn Gly Val Thr 
    130                 135                 140                 


Ser Ala Cys Lys Arg Ser Gly Ser Ser Phe Tyr Ala Glu Met Lys Trp 
145                 150                 155                 160 


Leu Leu Ser Asn Thr Asp Asn Ala Ala Phe Pro Gln Met Thr Lys Ser 
                165                 170                 175     


Tyr Lys Asn Thr Arg Lys Ser Pro Ala Ile Ile Val Trp Gly Ile His 
            180                 185                 190         


His Ser Val Ser Thr Ala Glu Gln Thr Lys Leu Tyr Gly Ser Gly Asn 
        195                 200                 205             


Lys Leu Val Thr Val Gly Ser Ser Asn Tyr Gln Gln Ser Phe Val Pro 
    210                 215                 220                 


Ser Pro Gly Ala Arg Pro Gln Val Asn Gly Leu Ser Gly Arg Ile Asp 
225                 230                 235                 240 


Phe His Trp Leu Ile Leu Asn Pro Asn Asp Thr Val Thr Phe Ser Phe 
                245                 250                 255     


Asn Gly Ala Phe Ile Ala Pro Asp Arg Ala Ser Phe Leu Arg Gly Lys 
            260                 265                 270         


Ser Met Gly Ile Gln Ser Gly Val Gln Val Asp Ala Asn Cys Glu Gly 
        275                 280                 285             


Asp Cys Tyr His Ser Gly Gly Thr Ile Ile Ser Asn Leu Pro Phe Gln 
    290                 295                 300                 


Asn Ile Asp Ser Arg Ala Val Gly Lys Cys Pro Arg Tyr Val Lys Gln 
305                 310                 315                 320 


Arg Ser Leu Leu Leu Ala Thr Gly Met Lys Asn Val Pro Glu Ile Pro 
                325                 330                 335     


Lys Gly Arg Gly Leu Phe Gly Ala Ile Ala Gly Phe Ile Glu Asn Gly 
            340                 345                 350         


Trp Glu Gly Leu Ile Asp Gly Trp Tyr Gly Phe Arg His Gln Asn Ala 
        355                 360                 365             


Gln Gly Glu Gly Thr Ala Ala Asp Tyr Lys Ser Thr Gln Ser Ala Ile 
    370                 375                 380                 


Asp Gln Ile Thr Gly Lys Leu Asn Arg Leu Ile Ala Lys Thr Asn Gln 
385                 390                 395                 400 


Gln Phe Glu Leu Ile Asp Asn Glu Phe Asn Glu Val Glu Lys Gln Ile 
                405                 410                 415     


Gly Asn Val Ile Asn Trp Thr Arg Asp Ser Ile Thr Glu Val Trp Ser 
            420                 425                 430         


Tyr Asn Ala Glu Leu Leu Ile Ala Met Glu Asn Gln His Thr Ile Asp 
        435                 440                 445             


Leu Ala Asp Ser Glu Met Asp Lys Leu Tyr Glu Arg Val Lys Arg Gln 
    450                 455                 460                 


Leu Arg Glu Asn Ala Glu Glu Asp Gly Thr Gly Cys Phe Glu Ile Phe 
465                 470                 475                 480 


His Lys Cys Asp Asp Asp Cys Met Ala Ser Ile Arg Asn Asn Thr Tyr 
                485                 490                 495     


Asp His Arg Lys Tyr Arg Glu Glu Ala Met Gln Asn Arg Ile Gln Ile 
            500                 505                 510         


Asp Pro Val Lys Leu Ser Ser Gly Tyr Lys Asp Val Ile Leu Trp Phe 
        515                 520                 525             


Ser Phe Gly Ala Ser Cys Phe Ile Leu Leu Ala Ile Val Met Gly Leu 
    530                 535                 540                 


Val Phe Ile Cys Val Lys Asn Gly Asn Met Arg Cys Thr Ile Cys Ile 
545                 550                 555                 560 


<210>  3
<211>  678
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  H7 sequences of H7N9 avian influenza virus

<400>  3

Thr Gly Cys Thr Cys Ala Ala Ala Ala Gly Gly Gly Ala Ala Ala Cys 
1               5                   10                  15      


Gly Gly Ala Cys Ala Gly Thr Thr Gly Ala Cys Cys Thr Cys Gly Gly 
            20                  25                  30          


Thr Cys Ala Ala Thr Gly Thr Gly Gly Ala Cys Thr Cys Cys Thr Gly 
        35                  40                  45              


Gly Gly Gly Ala Cys Ala Ala Thr Cys Ala Cys Thr Gly Gly Ala Cys 
    50                  55                  60                  


Cys Ala Cys Cys Thr Cys Ala Ala Thr Gly Thr Gly Ala Cys Cys Ala 
65                  70                  75                  80  


Ala Thr Thr Cys Cys Thr Ala Gly Ala Ala Thr Thr Thr Thr Cys Gly 
                85                  90                  95      


Gly Cys Cys Gly Ala Thr Thr Thr Ala Ala Thr Thr Ala Thr Thr Gly 
            100                 105                 110         


Ala Gly Ala Gly Gly Cys Gly Ala Gly Ala Ala Gly Gly Ala Ala Gly 
        115                 120                 125             


Thr Gly Ala Thr Gly Thr Cys Thr Gly Thr Thr Ala Thr Cys Cys Thr 
    130                 135                 140                 


Gly Gly Ala Ala Ala Ala Thr Thr Cys Gly Thr Gly Ala Ala Thr Gly 
145                 150                 155                 160 


Ala Ala Gly Ala Ala Gly Cys Thr Cys Thr Gly Ala Gly Gly Cys Ala 
                165                 170                 175     


Ala Ala Thr Thr Cys Thr Cys Ala Gly Ala Gly Ala Ala Thr Cys Ala 
            180                 185                 190         


Gly Gly Cys Gly Gly Ala Ala Thr Thr Gly Ala Cys Ala Ala Gly Gly 
        195                 200                 205             


Ala Ala Ala Cys Ala Ala Thr Gly Gly Gly Gly Thr Thr Cys Ala Cys 
    210                 215                 220                 


Ala Thr Ala Cys Ala Ala Thr Gly Gly Ala Ala Thr Ala Ala Gly Ala 
225                 230                 235                 240 


Ala Cys Cys Ala Ala Thr Gly Gly Ala Gly Thr Ala Ala Cys Cys Ala 
                245                 250                 255     


Gly Thr Gly Cys Ala Thr Gly Thr Ala Ala Gly Ala Gly Ala Thr Cys 
            260                 265                 270         


Ala Gly Gly Ala Thr Cys Thr Thr Cys Ala Thr Thr Cys Thr Ala Thr 
        275                 280                 285             


Gly Cys Ala Gly Ala Ala Ala Thr Gly Ala Ala Ala Thr Gly Gly Cys 
    290                 295                 300                 


Thr Cys Cys Thr Gly Thr Cys Ala Ala Ala Cys Ala Cys Ala Gly Ala 
305                 310                 315                 320 


Thr Ala Ala Thr Gly Cys Thr Gly Cys Ala Thr Thr Cys Cys Cys Gly 
                325                 330                 335     


Cys Ala Gly Ala Thr Gly Ala Cys Thr Ala Ala Ala Thr Cys Ala Thr 
            340                 345                 350         


Ala Thr Ala Ala Ala Ala Ala Thr Ala Cys Ala Ala Gly Ala Ala Ala 
        355                 360                 365             


Ala Ala Gly Cys Cys Cys Ala Gly Cys Thr Ala Thr Ala Ala Thr Ala 
    370                 375                 380                 


Gly Thr Ala Thr Gly Gly Gly Gly Gly Ala Thr Cys Cys Ala Thr Cys 
385                 390                 395                 400 


Ala Thr Thr Cys Cys Gly Thr Thr Thr Cys Ala Ala Cys Thr Gly Cys 
                405                 410                 415     


Ala Gly Ala Gly Cys Ala Ala Ala Cys Cys Ala Ala Gly Cys Thr Ala 
            420                 425                 430         


Thr Ala Thr Gly Gly Gly Ala Gly Thr Gly Gly Ala Ala Ala Cys Ala 
        435                 440                 445             


Ala Ala Cys Thr Gly Gly Thr Gly Ala Cys Ala Gly Thr Thr Gly Gly 
    450                 455                 460                 


Gly Ala Gly Cys Thr Cys Thr Ala Ala Thr Thr Ala Thr Cys Ala Ala 
465                 470                 475                 480 


Cys Ala Ala Thr Cys Thr Thr Thr Cys Gly Thr Ala Cys Cys Gly Ala 
                485                 490                 495     


Gly Thr Cys Cys Ala Gly Gly Ala Gly Cys Gly Ala Gly Ala Cys Cys 
            500                 505                 510         


Ala Cys Ala Ala Gly Thr Thr Ala Ala Thr Gly Gly Thr Cys Thr Ala 
        515                 520                 525             


Thr Cys Cys Gly Gly Gly Ala Gly Ala Ala Thr Thr Gly Ala Cys Thr 
    530                 535                 540                 


Thr Thr Cys Ala Thr Thr Gly Gly Cys Thr Ala Ala Thr Ala Cys Thr 
545                 550                 555                 560 


Ala Ala Ala Thr Cys Cys Cys Ala Ala Thr Gly Ala Thr Ala Cys Ala 
                565                 570                 575     


Gly Thr Cys Ala Cys Thr Thr Thr Cys Ala Gly Thr Thr Thr Cys Ala 
            580                 585                 590         


Ala Thr Gly Gly Gly Gly Cys Thr Thr Thr Cys Ala Thr Ala Gly Cys 
        595                 600                 605             


Thr Cys Cys Ala Gly Ala Cys Cys Gly Thr Gly Cys Ala Ala Gly Cys 
    610                 615                 620                 


Thr Thr Cys Cys Thr Gly Ala Gly Ala Gly Gly Ala Ala Ala Ala Thr 
625                 630                 635                 640 


Cys Thr Ala Thr Gly Gly Gly Ala Ala Thr Cys Cys Ala Gly Ala Gly 
                645                 650                 655     


Thr Gly Gly Ala Gly Thr Ala Cys Ala Gly Gly Thr Thr Gly Ala Thr 
            660                 665                 670         


Gly Cys Cys Ala Ala Thr 
        675             


