                         SEQUENCE LISTING

<110>  Ludwig Institute for Cancer Research Ltd.
 
<120>  BISULFITE-FREE, BASE-RESOLUTION IDENTIFICATION OF CYTOSINE 
       MODIFICATIONS

<130>  084276.00229

<140>  PCT/US19/12627
<141>  2019-01-08

<150>  62/614,798
<151>  2018-01-08

<150>  62/771,409
<151>  2018-11-26

<150>  62/660,523
<151>  2018-04-20

<160>  80    

<170>  PatentIn version 3.5

<210>  1
<211>  12
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  1
gtcgaccgga tc                                                           12


<210>  2
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  2
ttggatccgg tcgactt                                                      17


<210>  3
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  3
cctgatgaaa caagcatgtc                                                   20


<210>  4
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  4
cautactcac utccccacut                                                   20


<210>  5
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n=methylcytosine

<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  n = hydroxymethylcytosine

<400>  5
cccgangcat gatctgtact tgatcgacng tgcaac                                 36


<210>  6
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  6
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatct         58


<210>  7
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n = phosphorylation

<400>  7
ngatcggaag agcacacgtc tgaactccag tcacgccaat atctcgtatg ccgtcttctg       60

cttg                                                                    64


<210>  8
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  8
tcttccgauc gttgcacggu cgatcaagua cagatcatgc gucgggagau cggaag           56


<210>  9
<211>  157
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (64)..(64)
<223>  n = methylcytosine

<220>
<221>  misc_feature
<222>  (87)..(87)
<223>  n = hydroxymethylcytosine

<400>  9
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatctcc       60

cgangcatga tctgtacttg atcgacngtg caacgatcgg aagagcacac gtctgaactc      120

cagtcacgcc aatatctcgt atgccgtctt ctgcttg                               157


<210>  10
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  10
aatgatacgg cgaccaccga g                                                 21


<210>  11
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  11
caagcagaag acggcatacg ag                                                22


<210>  12
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  n = methylcytosine

<220>
<221>  misc_feature
<222>  (19)..(19)
<223>  n = methylcytosine

<220>
<221>  misc_feature
<222>  (27)..(27)
<223>  n = methylcytosine

<400>  12
agcagtctng atcagctgnt actgtangta gcat                                   34


<210>  13
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  13
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatct         58


<210>  14
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n = phosphorylation

<400>  14
ngatcggaag agcacacgtc tgaactccag tcacgccaat atctcgtatg ccgtcttctg       60

cttg                                                                    64


<210>  15
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n = phosphorylation

<400>  15
naggtgcgct aagttctaga tcgccaactg gttgtggcct t                           41


<210>  16
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n = phosphorylation

<400>  16
nctatagccg gcttgctctc tctgcctcta gcagctgctc cctatagtga gtcgtattaa       60

c                                                                       61


<210>  17
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  17
atctagaact tagcgcacct agatcggaag agcgtcgtgt                             40


<210>  18
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  18
agagagcaag ccggctatag atgctacgta cagtagcagc tgatcaagac tgctaaggcc       60

acaaccagtt ggcg                                                         74


<210>  19
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  19
agacgtgtgc tcttccgatc gttaatacga ctcactatag gg                          42


<210>  20
<211>  255
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (107)..(107)
<223>  n =  methylcytosine

<220>
<221>  misc_feature
<222>  (117)..(117)
<223>  n =  methylcytosine

<220>
<221>  misc_feature
<222>  (125)..(125)
<223>  n =  methylcytosine

<400>  20
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatctag       60

gtgcgctaag ttctagatcg ccaactggtt gtggccttag cagtctngat cagctgntac      120

tgtangtagc atctatagcc ggcttgctct ctctgcctct agcagctgct ccctatagtg      180

agtcgtatta acgatcggaa gagcacacgt ctgaactcca gtcacgccaa tatctcgtat      240

gccgtcttct gcttg                                                       255


<210>  21
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  21
tgctagaggc agagagagca ag                                                22


<210>  22
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  n= DHU or U or T or C

<400>  22
agcagtctng atcagct                                                      17


<210>  23
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  23
gctactgtac gtagcat                                                      17


<210>  24
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  24
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatct         58


<210>  25
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n = phosphorylation

<400>  25
ngatcggaag agcacacgtc tgaactccag tcacgccaat atctcgtatg ccgtcttctg       60

cttg                                                                    64


<210>  26
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n = phosphorylation

<400>  26
naggtgcgct aagttctaga tcgccaactg gttgtggcct t                           41


<210>  27
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n = phosphorylation

<400>  27
nctatagccg gcttgctctc tctgcctcta gcagctgctc cctatagtga gtcgtattaa       60

c                                                                       61


<210>  28
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  28
atctagaact tagcgcacct agatcggaag agcgtcgtgt                             40


<210>  29
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  29
agagagcaag ccggctatag atgctacgta cagtagcagc tgatcaagac tgctaaggcc       60

acaaccagtt ggcg                                                         74


<210>  30
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  30
agacgtgtgc tcttccgatc gttaatacga ctcactatag gg                          42


<210>  31
<211>  255
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (107)..(107)
<223>  n = DHU or U or T or C

<400>  31
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatctag       60

gtgcgctaag ttctagatcg ccaactggtt gtggccttag cagtctngat cagctgctac      120

tgtacgtagc atctatagcc ggcttgctct ctctgcctct agcagctgct ccctatagtg      180

agtcgtatta acgatcggaa gagcacacgt ctgaactcca gtcacgccaa tatctcgtat      240

gccgtcttct gcttg                                                       255


<210>  32
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  32
cacagatgtc tgcctgttca                                                   20


<210>  33
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  33
agggtggtga atgtgaaacc                                                   20


<210>  34
<211>  2018
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  34
cacagatgtc tgcctgttca tccgcgtcca gctcgttgag tttctccaga agcgttaatg       60

tctggcttct gataaagcgg gccatgttaa gggcggtttt ttcctgtttg gtcactgatg      120

cctccgtgta agggggattt ctgttcatgg gggtaatgat accgatgaaa cgagagagga      180

tgctcacgat acgggttact gatgatgaac atgcccggtt actggaacgt tgtgagggta      240

aacaactggc ggtatggatg cggcgggacc agagaaaaat cactcagggt caatgccagc      300

gcttcgttaa tacagatgta ggtgttccac agggtagcca gcagcatcct gcgatgcaga      360

tccggaacat aatggtgcag ggcgctgact tccgcgtttc cagactttac gaaacacgga      420

aaccgaagac cattcatgtt gttgctcagg tcgcagacgt tttgcagcag cagtcgcttc      480

acgttcgctc gcgtatcggt gattcattct gctaaccagt aaggcaaccc cgccagccta      540

gccgggtcct caacgacagg agcacgatca tgcgcacccg tggggccgcc atgccggcga      600

taatggcctg cttctcgccg aaacgtttgg tggcgggacc agtgacgaag gcttgagcga      660

gggcgtgcaa gattccgaat accgcaagcg acaggccgat catcgtcgcg ctccagcgaa      720

agcggtcctc gccgaaaatg acccagagcg ctgccggcac ctgtcctacg agttgcatga      780

taaagaagac agtcataagt gcggcgacga tagtcatgcc ccgcgcccac cggaaggagc      840

tgactgggtt gaaggctctc aagggcatcg gtcgagatcc cggtgcctaa tgagtgagct      900

aacttacatt aattgcgttg cgctcactgc ccgctttcca gtcgggaaac ctgtcgtgcc      960

agctgcatta atgaatcggc caacgcgcgg ggagaggcgg tttgcgtatt gggcgccagg     1020

gtggtttttc ttttcaccag tgagacgggc aacagctgat tgcccttcac cgcctggccc     1080

tgagagagtt gcagcaagcg gtccacgctg gtttgcccca gcaggcgaaa atcctgtttg     1140

atggtggtta acggcgggat ataacatgag ctgtcttcgg tatcgtcgta tcccactacc     1200

gagatatccg caccaacgcg cagcccggac tcggtaatgg cgcgcattgc gcccagcgcc     1260

atctgatcgt tggcaaccag catcgcagtg ggaacgatgc cctcattcag catttgcatg     1320

gtttgttgaa aaccggacat ggcactccag tcgccttccc gttccgctat cggctgaatt     1380

tgattgcgag tgagatattt atgccagcca gccagacgca gacgcgccga gacagaactt     1440

aatgggcccg ctaacagcgc gatttgctgg tgacccaatg cgaccagatg ctccacgccc     1500

agtcgcgtac cgtcttcatg ggagaaaata atactgttga tgggtgtctg gtcagagaca     1560

tcaagaaata acgccggaac attagtgcag gcagcttcca cagcaatggc atcctggtca     1620

tccagcggat agttaatgat cagcccactg acgcgttgcg cgagaagatt gtgcaccgcc     1680

gctttacagg cttcgacgcc gcttcgttct accatcgaca ccaccacgct ggcacccagt     1740

tgatcggcgc gagatttaat cgccgcgaca atttgcgacg gcgcgtgcag ggccagactg     1800

gaggtggcaa cgccaatcag caacgactgt ttgcccgcca gttgttgtgc cacgcggttg     1860

ggaatgtaat tcagctccgc catcgccgct tccacttttt cccgcgtttt cgcagaaacg     1920

tggctggcct ggttcaccac gcgggaaacg gtctgataag agacaccggc atactctgcg     1980

acatcgtata acgttactgg tttcacattc accaccct                             2018


<210>  35
<211>  120
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Template

<400>  35
atactcatca ttaaacttcg cccttaccta ccacttcgtg tatgtagata ggtagtatac       60

aattgatatc gaaatgagta cgtagatagt agaaagtaag atggaggtga gagtgagagt      120


<210>  36
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  36
atactcatca ttaaacttcg cccttaccta ccacttcg                               38


<210>  37
<211>  120
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Template


<220>
<221>  misc_feature
<222>  (23)..(23)
<223>  n = hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (23)..(23)
<223>  n = 5-hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  n = 5-hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n = 5-hydroxymethylcytosine

<400>  37
gcggcgtgat actggtcccg agnctgaagt taggccnggg atgactgana gtcttccgag       60

accgacgaca caggtctccc tatagtgagt cgtattatgg cgagagaatg aatctccatc      120


<210>  38
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  38
gatggagatt cattctctcg ccataatacg actcactata gg                          42


<210>  39
<211>  90
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Template


<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (51)..(51)
<223>  n = methylcytosine

<220>
<221>  misc_feature
<222>  (52)..(52)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (53)..(53)
<223>  n = A or G or T or C

<400>  39
gaagatgcag aagacaggaa ggatgaaaca ctcaggcgca cgctggcatn nnngacaaac       60

cacaagaaca ggctagtgag aatgaaggga                                        90


<210>  40
<211>  90
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Template


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n = hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (51)..(51)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (52)..(52)
<223>  n = A or G or T or C

<400>  40
ccaactctga aacccaccaa cgccaacatc caccacacaa cccaagatnn nngaccatct       60

tacaaacata tcccttcatt ctcactagcc                                        90


<210>  41
<211>  160
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Template


<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (51)..(51)
<223>  n = methylcytosine

<220>
<221>  misc_feature
<222>  (52)..(52)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (53)..(53)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (109)..(109)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (110)..(110)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (112)..(112)
<223>  n = A or G or T or C

<400>  41
gaagatgcag aagacaggaa ggatgaaaca ctcaggcgca cgctggcatn nnngacaaac       60

cacaagaaca ggctagtgag aatgaaggga tatgtttgta agatggtcnn gnatcttggg      120

ttgtgtggtg gatgttggcg ttggtgggtt tcagagttgg                            160


<210>  42
<211>  160
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Template


<220>
<221>  misc_feature
<222>  (49)..(49)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  n =hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (51)..(51)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (52)..(52)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (108)..(108)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (109)..(109)
<223>  n = A or G or T or C

<220>
<221>  misc_feature
<222>  (111)..(111)
<223>  n = A or G or T or C

<400>  42
ccaactctga aacccaccaa cgccaacatc caccacacaa cccaagatnn nngaccatct       60

tacaaacata tcccttcatt ctcactagcc tgttcttgtg gtttgtcnng natgccagcg      120

tgcgcctgag tgtttcatcc ttcctgtctt ctgcatcttc                            160


<210>  43
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  43
cctgatgaaa caagcatgtc                                                   20


<210>  44
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  44
cattactcac ttccccactt                                                   20


<210>  45
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  45
gctgcagatt ggagccaaag ttgatggtga tggtggagcc                             40


<210>  46
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  46
tcagtgctca tggactcata ctataccctg ggagcaaagt tgttg                       45


<210>  47
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  47
cccactagac atgctctgcc caaaatgttg cttgccttcc g                           41


<210>  48
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  48
tccctgagcc ctgatctagt aatactggct gaccggttct                             40


<210>  49
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  49
acaccacagc agaagagagc taggattgtt gcacaggcca                             40


<210>  50
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  50
gctgagctgt atccttgagg tacacgtggg tattccacag c                           41


<210>  51
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  51
gtggatcttc agtggtggca atgctccctc atcctttgca                             40


<210>  52
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  52
agcctctgaa cttgactgcc gcctggaact cctgacagtc                             40


<210>  53
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  53
ggtccttgat ccacccagac acatggtgct ggtctaaccg                             40


<210>  54
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = 5-carboxylcytosine

<400>  54
tcgacnggat c                                                            11


<210>  55
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = DHU

<400>  55
tcgacnggat c                                                            11


<210>  56
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  primer


<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n = 5-formylcytosine

<400>  56
gtcgaccgga tcn                                                          13


<210>  57
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  5 oxime cytosine

<400>  57
gtcgaccgga tcn                                                          13


<210>  58
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Prime


<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n = Dihydrouracil

<400>  58
gtcgaccgga tcn                                                          13


<210>  59
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = 5-carboxylcytosine

<400>  59
tcgacnggat c                                                            11


<210>  60
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = amide cytosine

<400>  60
tcgacnggat c                                                            11


<210>  61
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = Dihydrouracil

<400>  61
tcgacnggat c                                                            11


<210>  62
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = 5-Methylcytosine

<400>  62
tcgacnggat c                                                            11


<210>  63
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = 5-formylcytosine

<400>  63
tcgacnggat c                                                            11


<210>  64
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = 5-hydroxymethylcytosine

<400>  64
tcgacnggat c                                                            11


<210>  65
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = glucosyl-5-hydroxymethyl-cytosine

<400>  65
tcgacnggat c                                                            11


<210>  66
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = Dihydrouracil

<400>  66
tcgacnggat c                                                            11


<210>  67
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = Methylcytosine

<400>  67
cctgtngagc                                                              10


<210>  68
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  68
cctgtcgagc                                                              10


<210>  69
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  69
cctgttgagc                                                              10


<210>  70
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  70
agtcttgatc                                                              10


<210>  71
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = Methylcytosine

<400>  71
agtctngatc                                                              10


<210>  72
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n = Methylcytosine

<400>  72
cctgtngagc                                                              10


<210>  73
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  73
cctgttgagc                                                              10


<210>  74
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  74
cctgtcgagc                                                              10


<210>  75
<211>  116
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (19)..(19)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (57)..(57)
<223>  n = hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (67)..(67)
<223>  n = hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (78)..(78)
<223>  n = hydroxymethylcytosine

<400>  75
atactcatca ttaaacttng cccttaccta cttngtgtat gatgataggt agtatanaat       60

tgatatngaa atgagtangt agatagtaga aagtaagatg gaggtgagag tgagag          116


<210>  76
<211>  119
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  76
atactcatca ttaaacttcg cccttaccta ccacttcgtg tatgtagata ggtagtatac       60

aattgatatc gaaatgagta cgtagatagt agaaagtaag atggaggtga gagtgagag       119


<210>  77
<211>  119
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (20)..(20)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (71)..(71)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (82)..(82)
<223>  n = Methylcytosine

<400>  77
tatgagtagt aatttgaagn gggaatggat ggtgaagnac atacatatat ccatcatatg       60

ttaactatag ntttactcat gnatctatca tctttcattc tacctccact ctcactctc       119


<210>  78
<211>  113
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (20)..(20)
<223>  n = hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  n = hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (46)..(46)
<223>  n = hydroxymethylcytosine

<220>
<221>  misc_feature
<222>  (54)..(54)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (60)..(60)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (63)..(63)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (88)..(88)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (98)..(98)
<223>  n = Methylcytosine

<400>  78
gngtgatact ggtccngagn ctgaagttag gccngggatg actganagtc ttcngagacn       60

gangacacag gtctccctat agtgagtngt attatggnga gagaatgaat ctc             113


<210>  79
<211>  113
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  79
gcgtgatact ggtcccgagc ctgaagttag gcccgggatg actgacagtc ttccgagacc       60

gacgacacag gtctccctat agtgagtcgt attatggcga gagaatgaat ctc             113


<210>  80
<211>  113
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (17)..(17)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (55)..(55)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (61)..(61)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (64)..(64)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (89)..(89)
<223>  n = Methylcytosine

<220>
<221>  misc_feature
<222>  (99)..(99)
<223>  n = Methylcytosine

<400>  80
cgnactatga ccagggntcg gacttcaatc cgggncctac tgactgtcag aaggntctgg       60

ntgntgtgtc cagagggata tcactcagna taataccgnt ctcttactta gag             113


