                         SEQUENCE LISTING

<110>  Gen-Probe Incorporated
 
<120>  COMPOSITIONS AND METHODS FOR DETECTING TOXIGENIC CLOSTRIDIUM 
       DIFFICILE

<130>  01159-0015-00PCT

<150>  US 62/599,494
<151>  2017-12-15

<160>  339   

<170>  PatentIn version 3.5

<210>  1
<211>  681
<212>  DNA
<213>  Clostridioides difficile

<400>  1
atgttttcta aaaaaaatga gggtaacgaa tttagtaatg aaggaaaagg aagctctaag       60

aaaataatta aattctttaa gagcacaaag ggtattgctc tactggcatt tattttgggc      120

gtgttttttg gcaatatatc ctcaccagct tgttctgaag accatgagga ggtcatttct      180

aatcaaacat cagttataga ttctcaaaaa acagaaatag aaactttaaa tagcaaattg      240

tctgatgctg aaccatggtt caaaatgaaa gacgacgaaa agaaagctat tgaagctgaa      300

aatcaacgta aagctgaaga agctaaaaag gctgaagaac aacgtaaaaa agaagaagaa      360

gagaagaaag gatatgatac tggtattact tatgaccaat tagctagaac acctgatgat      420

tataagtaca aaaaggtaaa atttgaaggt aaggttattc aagttattga agatggtgat      480

gaggtgcaaa taagattagc tgtgtctgga aattatgata aggtcgtact atgtagttat      540

aaaaaatcaa taactccttc aagagtgtta gaggatgatt acataactat aagaggtata      600

agtgctggaa ctataactta tgaatcaact atgggtggaa atataactat accagggata      660

gctgtagaga aaataaatta a                                                681


<210>  2
<211>  480
<212>  DNA
<213>  Clostridioides difficile

<400>  2
atgttttcta aaaaaaatga gggtaacgaa tttagtaatg aaggaaaagg aagctctaag       60

aaaataatta aattctttaa gagcacaaag ggtattgctc tactggcatt tattttaggc      120

gtgttttttg gcaatatatc ctcaccatct tgttctgaag accatgagga ggtcatttct      180

aaccaaacat cagttataga ttctcaaaaa acagaaatag aaactttaaa tagcaaattg      240

tctgatgctg aaccatggtt caaaatgaaa gacgacgaaa agaaagctat tgaagctgaa      300

aatcaacgta aagctgaaga agctaaaaaa gctgaagaag ctaaaaaggc tgaagaacaa      360

cgcaaaaaag aagaagagga gaagaaagga tatgatactg gtattactta tgaccaatta      420

gctagaacac ctgatgatta taagtacaaa aaggtaaaat ttgaaggtaa ggttattcaa      480


<210>  3
<211>  680
<212>  DNA
<213>  Clostridioides difficile

<400>  3
atgttttcta aaaaaaatga gggtaacgaa tttagtaatg aaggaaaagg aagctctaag       60

aaaataatta aattctttaa gagcacaaag ggtattgctc tactggcatt tattttggcg      120

tgttttttgg caatatatcc tcaccagctt gttctgaaga ccatgaggag gtcatttcta      180

atcaaacatc agttatagat tctcaaaaaa cagaaataga aactttaaat agcaaattgt      240

ctgatgctga accatggttc aaaatgaaag acgacgaaaa gaaagctatt gaagctgaaa      300

atcaacgtaa agctgaagaa gctaaaaagg ctgaagaaca acgtaaaaaa gaagaagaag      360

agaagaaagg atatgatact ggtattactt atgaccaatt agctagaaca cctgatgatt      420

ataagtacaa aaaggtaaaa tttgaaggta aggttattca agttattgaa gatggtgatg      480

aggtgcaaat aagattagct gtgtctggaa attatgataa ggtcgtacta tgtagttata      540

aaaaatcaat aactccttca agagtgttag aggatgatta cataactata agaggtataa      600

gtgctggaac tataacttat gaatcaacta tgggtggaaa tataactata ccagggatag      660

ctgtagagaa aataaattaa                                                  680


<210>  4
<211>  681
<212>  DNA
<213>  Clostridioides difficile

<400>  4
atgttttcta aaaaaaatga gggtaacgaa tttagtaatg aaggaaaagg aagctctaag       60

aaaataatta aattctttaa gagcacaaag ggtattgctc tactggcatt tatttttggc      120

gtgttttttg gcaatatatc ctcaccagct tgttctgaag accatgagga ggtcatttct      180

aatcaaacat cagttataga ttctcaaaaa acagaaatag aaactttaaa tagcaaattg      240

tctgatgctg aaccatggtt caaaatgaaa gacgacgaaa agaaagctat tgaagctgaa      300

aatcaacgta aagctgaaga agctaaaaag gctgaagaac aacgtaaaaa agaagaagaa      360

gagaagaaag gatatgatac tggtattact tatgaccaat tagctagaac acctgatgat      420

tataagtaca aaaaggtaaa atttgaaggt aaggttattc aagttattga agatggtgat      480

gaggtgcaaa taagattagc tgtgtctgga aattatgata aggtcgtact atgtagttat      540

aaaaaatcaa taactccttc aagagtgtta gaggatgatt acataactat aagaggtata      600

agtgctggaa ctataactta tgaatcaact atgggtggaa atataactat accagggata      660

gctgtagaga aaataaatta a                                                681


<210>  5
<211>  681
<212>  DNA
<213>  Clostridioides difficile

<400>  5
atgttttcta aaaaaaatga gggtaacgaa tttagtaatg aaggaaaagg aagctctaag       60

aaaataatta aattctttaa gagcacaaag ggtattgctc tactggcatt tattttgggc      120

gtgttttttg gcaatatatc ctcaccagct tgttctgaag accatgagga ggtcatttct      180

aattaaacat cagttataga ttctcaaaaa acagaaatag aaactttaaa tagcaaattg      240

tctgatgctg aaccatggtt caaaatgaaa gacgacgaaa agaaagctat tgaagctgaa      300

aatcaacgta aagctgaaga agctaaaaag gctgaagaac aacgtaaaaa agaagaagaa      360

gagaagaaag gatatgatac tggtattact tatgaccaat tagctagaac acctgatgat      420

tataagtaca aaaaggtaaa atttgaaggt aaggttattc aagttattga agatggtgat      480

gaggtgcaaa taagattagc tgtgtctgga aattatgata aggtcgtact atgtagttat      540

aaaaaatcaa taactccttc aagagtgtta gaggatgatt acataactat aagaggtata      600

agtgctggaa ctataactta tgaatcaact atgggtggaa atataactat accagggata      660

gctgtagaga aaataaatta a                                                681


<210>  6
<211>  2631
<212>  DNA
<213>  Clostridioides difficile

<400>  6
atgaaagtac aaatgaggaa taaaaaggta ttaagttttt taacacttac agccatagtt       60

agtcaagcat tagcatatcc tgtatatgct caaactagta caagtagcca ttctgataat      120

aaaaaagaaa ttataaatga agacatactc acaaacaacg gattaatggg atattatttc      180

acagacgaac actttaaaga tttaaaatta atggcaccca taaaagatgg taatttaaaa      240

tttgaagaaa agaaagtaga taaacttcta aataaagaca aatcaaatgt aaaatctata      300

cgatggacag gaagaataat tccttctaag gatggtgaat atacattatc aactgataga      360

gatgatattt taatgcaagt aaataatgag agtactatat caaatacact taaagttaat      420

atgaaaaagg gtaaagaata taaatttaga atagagctac aagataaaaa tttaggttca      480

atagataatt tatcatcacc aaatctttat tgggaattag atggtattaa gaaaattata      540

ccagcagaaa atttattctt aagagattat tctaatatag aaaaaaatga tccatttatc      600

ccaaataaca atttctttga cccaaggttg atgtctgatt gggaagacga agatttggat      660

acagataatg ataatatacc agattcatat gaacgaaatg gatatactat taaggactta      720

attgcagtta agtgggaaga tagctttgca gaacaaggct ataagaaata tgtatcaaat      780

tatttagagt caaatactgc tggagatcca tatacagatt atgaaaaagc ttcaggttct      840

tttgacaagg ctataaagac cgaagcaaga gatccgttag ttgcagcgta tccaattgtt      900

ggagtaggta tggaaaaatt aattatatct acaaatgaac atgcctctac tgatcaaggt      960

aaaactgttt ccagagctac tactaacagt aaaactgaat ctaatacagc tggtgtttct     1020

gttaatgtag gatatcaaaa tggattcaca gctaatgtaa ctacaaatta ttcccataca     1080

acagataatt caactgccgt tcaagatagt aatggagaat catggaatac tggattaagt     1140

ataaacaaag gagaatctgc atatataaat gcaaatgtta gatattacaa cacaggtact     1200

gcacctatgt acaaagtgac accaacaaca aatttagtgt tagatggaga tacattatca     1260

actatcaaag cacaagaaaa tcaaattggc aataatctat ctcctggaga tacttatccc     1320

aaaaaagggc tttcacctct ggctcttaac acaatggatc aatttagctc tagactgatt     1380

cctataaatt atgatcaatt aaaaaaatta gatgctggaa agcaaattaa attagaaaca     1440

acacaagtaa gtggaaattt tggtacaaaa aatagttctg gacaaatagt aacagaagga     1500

aatagttggt cagactatat aagtcaaatt gacagtattt ctgcatctat tatattagat     1560

acagagaatg aatcttacga aagaagagtt actgctaaaa atttacagaa tccagaagat     1620

aaaacacctg aacttacaat tggagaagca attgaaaaag cttttggcgc tactaaaaaa     1680

gatggtttgt tatattttaa tgatatacca atagatgaaa gttgtgttga actcatattt     1740

gatgataata cagccaataa gattaaagat agtttaaaaa ctttgtctga taaaaagata     1800

tataatgtta aacttgaaag aggaatgaat atacttataa aaacaccaac ttactttact     1860

aattttgatg attacaataa ttaccctagt acatggagta atgtcaatac tacgaatcaa     1920

gatggtttac aaggctcagc aaataaatta aatggtgaga caaagattaa aatacctatg     1980

tctaagctaa aaccttataa acgttatgtt tttagtggat attcaaagga tcctttaaca     2040

tctaattcaa taattgtaaa gataaaagca aaagaagaaa aaacggatta tttggtacca     2100

gaacaaggat atacaaagtt tagttatgaa tttgaaacta ctgaaaaaga ttcttctaat     2160

atagagataa cattaattgg tagtggtaca acatacttag ataacttatc tattacagaa     2220

ctgaatagta ctcctgaaat acttaatgaa ccagaagtta aaattccaac tgaccaagaa     2280

ataatagatg cacataaaat atattctgca gatttaaatt ttaatccaag tacaggaaat     2340

gcttatataa atggtatgta ttttacacca acacaaacta ataaagaagc tctcgattat     2400

atccaaaaat atagagttga agctacttta caatattctg gatttaaaga tattggaact     2460

aaagataaag aaatgcgtaa ttatttagga gatccaaatc aacctaaaac taattatgtc     2520

aatcttagga gttattttac aggtggagaa aatattatga catacaagaa attaagaata     2580

tatgcaatta ctccagatga tagagagtta ttagttctta gtgttgatta g              2631


<210>  7
<211>  8133
<212>  DNA
<213>  Clostridioides difficile

<400>  7
atgtctttaa tatctaaaga agagttaata aaactcgcat atagcattag accaagagaa       60

aatgagtata aaactatact aactaattta gacgaatata ataagttaac tacaaacaat      120

aatgaaaata aatatttaca attaaaaaaa ctaaatgaat caattgatgt ttttatgaat      180

aaatataaaa cttcaagcag aaatagagca ctctctaatc taaaaaaaga tatattaaaa      240

gaagtaattc ttattaaaaa ttccaataca agccctgtag aaaaaaattt acattttgta      300

tggataggtg gagaagtcag tgatattgct cttgaataca taaaacaatg ggctgatatt      360

aatgcagaat ataatattaa actgtggtat gatagtgaag cattcttagt aaatacacta      420

aaaaaggcta tagttgaatc ttctaccact gaagcattac agctactaga ggaagagatt      480

caaaatcctc aatttgataa tatgaaattt tacaaaaaaa ggatggaatt tatatatgat      540

agacaaaaaa ggtttataaa ttattataaa tctcaaatca ataaacctac agtacctaca      600

atagatgata ttataaagtc tcatctagta tctgaatata atagagatga aactgtatta      660

gaatcatata gaacaaattc tttgagaaaa ataaatagta atcatgggat agatatcagg      720

gctaatagtt tgtttacaga acaagagtta ttaaatattt atagtcagga gttgttaaat      780

cgtggaaatt tagctgcagc atctgacata gtaagattat tagccctaaa aaattttggc      840

ggagtatatt tagatgttga tatgcttcca ggtattcact ctgatttatt taaaacaata      900

tctagaccta gctctattgg actagaccgt tgggaaatga taaaattaga ggctattatg      960

aagtataaaa aatatataaa taattataca tcagaaaact ttgataaact tgatcaacaa     1020

ttaaaagata attttaaact cattatagaa agtaaaagtg aaaaatctga gatattttct     1080

aaattagaaa atttaaatgt atctgatctt gaaattaaaa tagctttcgc tttaggcagt     1140

gttataaatc aagccttgat atcaaaacaa ggttcatatc ttactaacct agtaatagaa     1200

caagtaaaaa atagatatca atttttaaac caacacctta acccagccat agagtctgat     1260

aataacttca cagatactac taaaattttt catgattcat tatttaattc agctaccgca     1320

gaaaactcta tgtttttaac aaaaatagca ccatacttac aagtaggttt tatgccagaa     1380

gctcgctcca caataagttt aagtggtcca ggagcttatg cgtcagctta ctatgatttc     1440

ataaatttac aagaaaatac tatagaaaaa actttaaaag catcagattt aatagaattt     1500

aaattcccag aaaataatct atctcaattg acagaacaag aaataaatag tctatggagc     1560

tttgatcaag caagtgcaaa atatcaattt gagaaatatg taagagatta tactggtgga     1620

tctctttctg aagacaatgg ggtagacttt aataaaaata ctgccctcga caaaaactat     1680

ttattaaata ataaaattcc atcaaacaat gtagaagaag ctggaagtaa aaattatgtt     1740

cattatatca tacagttaca aggagatgat ataagttatg aagcaacatg caatttattt     1800

tctaaaaatc ctaaaaatag tattattata caacgaaata tgaatgaaag tgcaaaaagc     1860

tactttttaa gtgatgatgg agaatctatt ttagaattaa ataaatatag gatacctgaa     1920

agattaaaaa ataaggaaaa agtaaaagta acctttattg gacatggtaa agatgaattc     1980

aacacaagcg aatttgctag attaagtgta gattcacttt ccaatgagat aagttcattt     2040

ttagatacca taaaattaga tatatcacct aaaaatgtag aagtaaactt acttggatgt     2100

aatatgttta gttatgattt taatgttgaa gaaacttatc ctgggaagtt gctattaagt     2160

attatggaca aaattacttc cactttacct gatgtaaata aaaattctat tactatagga     2220

gcaaatcaat atgaagtaag aattaatagt gagggaagaa aagaacttct ggctcactca     2280

ggtaaatgga taaataaaga agaagctatt atgagcgatt tatctagtaa agaatacatt     2340

ttttttgatt ctatagataa taagctaaaa gcaaagtcca agaatattcc aggattagca     2400

tcaatatcag aagatataaa aacattatta cttgatgcaa gtgttagtcc tgatacaaaa     2460

tttattttaa ataatcttaa gcttaatatt gaatcttcta ttggtgatta catttattat     2520

gaaaaattag agcctgttaa aaatataatt cacaattcta tagatgattt aatagatgag     2580

ttcaatctac ttgaaaatgt atctgatgaa ttatatgaat taaaaaaatt aaataatcta     2640

gatgagaagt atttaatatc ttttgaagat atctcaaaaa ataattcaac ttactctgta     2700

agatttatta acaaaagtaa tggtgagtca gtttatgtag aaacagaaaa agaaattttt     2760

tcaaaatata gcgaacatat tacaaaagaa ataagtacta taaagaatag tataattaca     2820

gatgttaatg gtaatttatt ggataatata cagttagatc atacttctca agttaataca     2880

ttaaacgcag cattctttat tcaatcatta atagattata gtagcaataa agatgtactg     2940

aatgatttaa gtacctcagt taaggttcaa ctttatgctc aactatttag tacaggttta     3000

aatactatat atgactctat ccaattagta aatttaatat caaatgcagt aaatgatact     3060

ataaatgtac tacctacaat aacagagggg atacctattg tatctactat attagacgga     3120

ataaacttag gtgcagcaat taaggaatta ctagacgaac atgacccatt actaaaaaaa     3180

gaattagaag ctaaggtggg tgttttagca ataaatatgt cattatctat agctgcaact     3240

gtagcttcaa ttgttggaat aggtgctgaa gttactattt tcttattacc tatagctggt     3300

atatctgcag gaataccttc attagttaat aatgaattaa tattgcatga taaggcaact     3360

tcagtggtaa actattttaa tcatttgtct gaatctaaaa aatatggccc tcttaaaaca     3420

gaagatgata aaattttagt tcctattgat gatttagtaa tatcagaaat agattttaat     3480

aataattcga taaaactagg aacatgtaat atattagcaa tggagggggg atcaggacac     3540

acagtgactg gtaatataga tcactttttc tcatctccat ctataagttc tcatattcct     3600

tcattatcaa tttattctgc aataggtata gaaacagaaa atctagattt ttcaaaaaaa     3660

ataatgatgt tacctaatgc tccttcaaga gtgttttggt gggaaactgg agcagttcca     3720

ggtttaagat cattggaaaa tgacggaact agattacttg attcaataag agatttatac     3780

ccaggtaaat tttactggag attctatgct tttttcgatt atgcaataac tacattaaaa     3840

ccagtttatg aagacactaa tattaaaatt aaactagata aagatactag aaacttcata     3900

atgccaacta taactactaa cgaaattaga aacaaattat cttattcatt tgatggagca     3960

ggaggaactt actctttatt attatcttca tatccaatat caacgaatat aaatttatct     4020

aaagatgatt tatggatatt taatattgat aatgaagtaa gagaaatatc tatagaaaat     4080

ggtactatta aaaaaggaaa gttaataaaa gatgttttaa gtaaaattga tataaataaa     4140

aataaactta ttataggcaa tcaaacaata gatttttcag gcgatataga taataaagat     4200

agatatatat tcttgacttg tgagttagat gataaaatta gtttaataat agaaataaat     4260

cttgttgcaa aatcttatag tttgttattg tctggggata aaaattattt gatatccaat     4320

ttatctaata ctattgagaa aatcaatact ttaggcctag atagtaaaaa tatagcgtac     4380

aattacactg atgaatctaa taataaatat tttggagcta tatctaaaac aagtcaaaaa     4440

agcataatac attataaaaa agacagtaaa aatatattag aattttataa tgacagtaca     4500

ttagaattta acagtaaaga ttttattgct gaagatataa atgtatttat gaaagatgat     4560

attaatacta taacaggaaa atactatgtt gataataata ctgataaaag tatagatttc     4620

tctatttctt tagttagtaa aaatcaagta aaagtaaatg gattatattt aaatgaatcc     4680

gtatactcat cttaccttga ttttgtgaaa aattcagatg gacaccataa tacttctaat     4740

tttatgaatt tatttttgga caatataagt ttctggaaat tgtttgggtt tgaaaatata     4800

aattttgtaa tcgataaata ctttaccctt gttggtaaaa ctaatcttgg atatgtagaa     4860

tttatttgtg acaataataa aaatatagat atatattttg gtgaatggaa aacatcgtca     4920

tctaaaagca ctatatttag cggaaatggt agaaatgttg tagtagagcc tatatataat     4980

cctgatacgg gtgaagatat atctacttca ctagattttt cctatgaacc tctctatgga     5040

atagatagat atataaataa agtattgata gcacctgatt tatatacaag tttaataaat     5100

attaatacca attattattc aaatgagtac taccctgaga ttatagttct taacccaaat     5160

acattccaca aaaaagtaaa tataaattta gatagttctt cttttgagta taaatggtct     5220

acagaaggaa gtgactttat tttagttaga tacttagaag aaagtaataa aaaaatatta     5280

caaaaaataa gaatcaaagg tatcttatct aatactcaat catttaataa aatgagtata     5340

gattttaaag atattaaaaa actatcatta ggatatataa tgagtaattt taaatcattt     5400

aattctgaaa atgaattaga tagagatcat ttaggattta aaataataga taataaaact     5460

tattactatg atgaagatag taaattagtt aaaggattaa tcaatataaa taattcatta     5520

ttctattttg atcctataga atttaactta gtaactggat ggcaaactat caatggtaaa     5580

aaatattatt ttgatataaa tactggagca gctttaacta gttataaaat tattaatggt     5640

aaacactttt attttaataa tgatggtgtg atgcagttgg gagtatttaa aggacctgat     5700

ggatttgaat attttgcacc tgccaatact caaaataata acatagaagg tcaggctata     5760

gtttatcaaa gtaaattctt aactttgaat ggcaaaaaat attattttga taatgactca     5820

aaagcagtca ctggatggag aattattaac aatgagaaat attactttaa tcctaataat     5880

gctattgctg cagtcggatt gcaagtaatt gacaataata agtattattt caatcctgac     5940

actgctatca tctcaaaagg ttggcagact gttaatggta gtagatacta ctttgatact     6000

gataccgcta ttgcctttaa tggttataaa actattgatg gtaaacactt ttattttgat     6060

agtgattgtg tagtgaaaat aggtgtgttt agtacctcta atggatttga atattttgca     6120

cctgctaata cttataataa taacatagaa ggtcaggcta tagtttatca aagtaaattc     6180

ttaactttga atggtaaaaa atattacttt gataataact caaaagcagt taccggatgg     6240

caaactattg atagtaaaaa atattacttt aatactaaca ctgctgaagc agctactgga     6300

tggcaaacta ttgatggtaa aaaatattac tttaatacta acactgctga agcagctact     6360

ggatggcaaa ctattgatgg taaaaaatat tactttaata ctaacactgc tatagcttca     6420

actggttata caattattaa tggtaaacat ttttatttta atactgatgg tattatgcag     6480

ataggagtgt ttaaaggacc taatggattt gaatattttg cacctgctaa tacggatgct     6540

aacaacatag aaggtcaagc tatactttac caaaatgaat tcttaacttt gaatagtaaa     6600

aaatattact ttggtagtga ctcaaaagca gttactggat ggagaattat taacaataag     6660

aaatattact ttaatcctaa taatgctatt gctgcaattc atctatgcac tataaataat     6720

gacaagtatt actttagtta tgatggaatt cttcaaaatg gatatattac tattgaaaga     6780

aataatttct attttgatgc taataatgaa tctaaaatgg taacaggagt atttaaagga     6840

cctaatggat ttgagtattt tgcacctgct aatactcaca ataataacat agaaggtcag     6900

gctatagttt accagaacaa attcttaact ttgaatggca aaaaatatta ttttgataat     6960

gactcaaaag cagttactgg atggcaaacc attgatggta aaaaatatta ctttaatctt     7020

aacactgctg aagcagctac tggatggcaa actattgatg gtaaaaaata ttactttaat     7080

cttaacactg ctgaagcagc tactggatgg caaactattg atggtaaaaa atattacttt     7140

aatactaaca ctttcatagc ctcaactggt tatacaagta ttaatggtaa acatttttat     7200

tttaatactg atggtattat gcagatagga gtgtttaaag gacctaatgg atttgaatac     7260

tttgcacctg ctaatactca taataataac atagaaggtc aagctatact ttaccaaaat     7320

aaattcttaa ctttgaatgg taaaaaatat tactttggta gtgactcaaa agcagttacc     7380

ggattgcgaa ctattgatgg taaaaaatat tactttaata ctaacactgc tgttgcagtt     7440

actggatggc aaactattaa tggtaaaaaa tactacttta atactaacac ttctatagct     7500

tcaactggtt atacaattat tagtggtaaa catttttatt ttaatactga tggtattatg     7560

cagataggag tgtttaaagg acctgatgga tttgaatact ttgcacctgc taatacagat     7620

gctaacaata tagaaggtca agctatacgt tatcaaaata gattcctata tttacatgac     7680

aatatatatt attttggtaa taattcaaaa gcggctactg gttgggtaac tattgatggt     7740

aatagatatt acttcgagcc taatacagct atgggtgcga atggttataa aactattgat     7800

aataaaaact tttactttag aaatggttta cctcagatag gagtgtttaa agggtctaat     7860

ggatttgaat actttgcacc tgctaatacg gatgctaaca atatagaagg tcaagctata     7920

cgttatcaaa atagattcct acatttactt ggaaaaatat attactttgg taataattca     7980

aaagcagtta ctggatggca aactattaat ggtaaagtat attactttat gcctgatact     8040

gctatggctg cagctggtgg acttttcgag attgatggtg ttatatattt ctttggtgtt     8100

gatggagtaa aagcccctgg gatatatggc taa                                  8133


<210>  8
<211>  7101
<212>  DNA
<213>  Clostridioides difficile

<400>  8
atgagtttag ttaatagaaa acagttagaa aaaatggcaa atgtaagatt tcgtactcaa       60

gaagatgaat atgttgcaat attggatgct ttagaagaat atcataatat gtcagagaat      120

actgtagtcg aaaaatattt aaaattaaaa gatataaata gtttaacaga tatttatata      180

gatacatata aaaaatctgg tagaaataaa gccttaaaaa aatttaagga atatctagtt      240

acagaagtat tagagctaaa gaataataat ttaactccag ttgagaaaaa tttacatttt      300

gtttggattg gaggtcaaat aaatgacact gctattaatt atataaatca atggaaagat      360

gtaaatagtg attataatgt taatgttttt tatgatagta atgcattttt gataaacaca      420

ttgaaaaaaa ctgtagtaga atcagcaata aatgatacac ttgaatcatt tagagaaaac      480

ttaaatgacc ctagatttga ctataataaa ttcttcagaa aacgtatgga aataatttat      540

gataaacaga aaaatttcat aaactactat aaagctcaaa gagaagaaaa tcctgaactt      600

ataattgatg atattgtaaa gacatatctt tcaaatgagt attcaaagga gatagatgaa      660

cttaatacct atattgaaga atccttaaat aaaattacac agaatagtgg aaatgatgtt      720

agaaactttg aagaatttaa aaatggagag tcattcaact tatatgaaca agagttggta      780

gaaaggtgga atttagctgc tgcttctgac atattaagaa tatctgcatt aaaagaaatt      840

ggtggtatgt atttagatgt tgatatgtta ccaggaatac aaccagactt atttgagtct      900

atagagaaac ctagttcagt aacagtggat ttttgggaaa tgacaaagtt agaagctata      960

atgaaataca aagaatatat accagaatat acctcagaac attttgacat gttagacgaa     1020

gaagttcaaa gtagttttga atctgttcta gcttctaagt cagataaatc agaaatattc     1080

tcatcacttg gtgatatgga ggcatcacca ctagaagtta aaattgcatt taatagtaag     1140

ggtattataa atcaagggct aatttctgtg aaagactcat attgtagcaa tttaatagta     1200

aaacaaatcg agaatagata taaaatattg aataatagtt taaatccagc tattagcgag     1260

gataatgatt ttaatactac aacgaatacc tttattgata gtataatggc tgaagctaat     1320

gcagataatg gtagatttat gatggaacta ggaaagtatt taagagttgg tttcttccca     1380

gatgttaaaa ctactattaa cttaagtggc cctgaagcat atgcggcagc ttatcaagat     1440

ttattaatgt ttaaagaagg cagtatgaat atccatttga tagaagctga tttaagaaac     1500

tttgaaatct ctaaaactaa tatttctcaa tcaactgaac aagaaatggc tagcttatgg     1560

tcatttgacg atgcaagagc taaagctcaa tttgaagaat ataaaaggaa ttattttgaa     1620

ggttctcttg gtgaagatga taatcttgat ttttctcaaa atatagtagt tgacaaggag     1680

tatcttttag aaaaaatatc ttcattagca agaagttcag agagaggata tatacactat     1740

attgttcagt tacaaggaga taaaattagt tatgaagcag catgtaactt atttgcaaag     1800

actccttatg atagtgtact gtttcagaaa aatatagaag attcagaaat tgcatattat     1860

tataatcctg gagatggtga aatacaagaa atagacaagt ataaaattcc aagtataatt     1920

tctgatagac ctaagattaa attaacattt attggtcatg gtaaagatga atttaatact     1980

gatatatttg caggttttga tgtagattca ttatccacag aaatagaagc agcaatagat     2040

ttagctaaag aggatatttc tcctaagtca atagaaataa atttattagg atgtaatatg     2100

tttagctact ctatcaacgt agaggagact tatcctggaa aattattact taaagttaaa     2160

gataaaatat cagaattaat gccatctata agtcaagact ctattatagt aagtgcaaat     2220

caatatgaag ttagaataaa tagtgaagga agaagagaat tattggatca ttctggtgaa     2280

tggataaata aagaagaaag tattataaag gatatttcat caaaagaata tatatcattt     2340

aatcctaaag aaaataaaat tacagtaaaa tctaaaaatt tacctgagct atctacatta     2400

ttacaagaaa ttagaaataa ttctaattca agtgatattg aactagaaga aaaagtaatg     2460

ttaacagaat gtgagataaa tgttatttca aatatagata cgcaaattgt tgaggaaagg     2520

attgaagaag ctaagaattt aacttctgac tctattaatt atataaaaga tgaatttaaa     2580

ctaatagaat ctatttctga tgcactatgt gacttaaaac aacagaatga attagaagat     2640

tctcatttta tatcttttga ggacatatca gagactgatg agggatttag tataagattt     2700

attaataaag aaactggaga atctatattt gtagaaactg aaaaaacaat attctctgaa     2760

tatgctaatc atataactga agagatttct aagataaaag gtactatatt tgatactgta     2820

aatggtaagt tagtaaaaaa agtaaattta gatactacac acgaagtaaa tactttaaat     2880

gctgcatttt ttatacaatc attaatagaa tataatagtt ctaaagaatc tcttagtaat     2940

ttaagtgtag caatgaaagt ccaagtttac gctcaattat ttagtactgg tttaaatact     3000

attacagatg cagccaaagt tgttgaatta gtatcaactg cattagatga aactatagac     3060

ttacttccta cattatctga aggattacct ataattgcaa ctattataga tggtgtaagt     3120

ttaggtgcag caatcaaaga gctaagtgaa acgagtgacc cattattaag acaagaaata     3180

gaagctaaga taggtataat ggcagtaaat ttaacaacag ctacaactgc aatcattact     3240

tcatctttgg ggatagctag tggatttagt atacttttag ttcctttagc aggaatttca     3300

gcaggtatac caagcttagt aaacaatgaa cttgtacttc gagataaggc aacaaaggtt     3360

gtagattatt ttaaacatgt ttcattagtt gaaactgaag gagtatttac tttattagat     3420

gataaaataa tgatgccaca agatgattta gtgatatcag aaatagattt taataataat     3480

tcaatagttt taggtaaatg tgaaatctgg agaatggaag gtggttcagg tcatactgta     3540

actgatgata tagatcactt cttttcagca ccatcaataa catatagaga gccacactta     3600

tctatatatg acgtattgga agtacaaaaa gaagaacttg atttgtcaaa agatttaatg     3660

gtattaccta atgctccaaa tagagtattt gcttgggaaa caggatggac accaggttta     3720

agaagcttag aaaatgatgg cacaaaactg ttagaccgta taagagataa ctatgaaggt     3780

gagttttatt ggagatattt tgcttttata gctgatgctt taataacaac attaaaacca     3840

agatatgaag atactaatat aagaataaat ttagatagta atactagaag ttttatagtt     3900

ccaataataa ctacagaata tataagagaa aaattatcat attctttcta tggttcagga     3960

ggaacttatg cattgtctct ttctcaatat aatatgggta taaatataga attaagtgaa     4020

agtgatgttt ggattataga tgttgataat gttgtgagag atgtaactat agaatctgat     4080

aaaattaaaa aaggtgattt aatagaaggt attttatcta cactaagtat tgaagagaat     4140

aaaattatct taaatagcca tgagattaat ttttctggtg aggtaaatgg aagtaatgga     4200

tttgtttctt taacattttc aattttagaa ggaataaatg caattataga agttgattta     4260

ttatctaaat catataaatt acttatttct ggcgaattaa aaatattgat gttaaattca     4320

aatcatattc aacagaaaat agattatata ggattcaata gcgaattaca gaaaaatata     4380

ccatatagct ttgtagatag tgaaggaaaa gagaatggtt ttattaatgg ttcaacaaaa     4440

gaaggtttat ttgtatctga attacctgat gtagttctta taagtaaggt ttatatggat     4500

gatagtaagc cttcatttgg atattatagt aataatttga aagatgtcaa agttataact     4560

aaagataatg ttaatatatt aacaggttat tatcttaagg atgatataaa aatctctctt     4620

tctttgactc tacaagatga aaaaactata aagttaaata gtgtgcattt agatgaaagt     4680

ggagtagctg agattttgaa gttcatgaat agaaaaggta atacaaatac ttcagattct     4740

ttaatgagct ttttagaaag tatgaatata aaaagtattt tcgttaattt cttacaatct     4800

aatattaagt ttatattaga tgctaatttt ataataagtg gtactacttc tattggccaa     4860

tttgagttta tttgtgatga aaatgataat atacaaccat atttcattaa gtttaataca     4920

ctagaaacta attatacttt atatgtagga aatagacaaa atatgatagt ggaaccaaat     4980

tatgatttag atgattctgg agatatatct tcaactgtta tcaatttctc tcaaaagtat     5040

ctttatggaa tagacagttg tgttaataaa gttgtaattt caccaaatat ttatacagat     5100

gaaataaata taacgcctgt atatgaaaca aataatactt atccagaagt tattgtatta     5160

gatgcaaatt atataaatga aaaaataaat gttaatatca atgatctatc tatacgatat     5220

gtatggagta atgatggtaa tgattttatt cttatgtcaa ctagtgaaga aaataaggtg     5280

tcacaagtta aaataagatt cgttaatgtt tttaaagata agactttggc aaataagcta     5340

tcttttaact ttagtgataa acaagatgta cctgtaagtg aaataatctt atcatttaca     5400

ccttcatatt atgaggatgg attgattggc tatgatttgg gtctagtttc tttatataat     5460

gagaaatttt atattaataa ctttggaatg atggtatctg gattaatata tattaatgat     5520

tcattatatt attttaaacc accagtaaat aatttgataa ctggatttgt gactgtaggc     5580

gatgataaat actactttaa tccaattaat ggtggagctg cttcaattgg agagacaata     5640

attgatgaca aaaattatta tttcaaccaa agtggagtgt tacaaacagg tgtatttagt     5700

acagaagatg gatttaaata ttttgcccca gctaatacac ttgatgaaaa cctagaagga     5760

gaagcaattg attttactgg aaaattaatt attgacgaaa atatttatta ttttgatgat     5820

aattatagag gagctgtaga atggaaagaa ttagatggtg aaatgcacta ttttagccca     5880

gaaacaggta aagcttttaa aggtctaaat caaataggtg atgataaata ctatttcaat     5940

tctgatggag ttatgcaaaa aggatttgtt agtataaatg ataataaaca ctattttgat     6000

gattctggtg ttatgaaagt aggttacact gaaatagatg gcaagcattt ctactttgct     6060

gaaaacggag aaatgcaaat aggagtattt aatacagaag atggatttaa atattttgct     6120

catcataatg aagatttagg aaatgaagaa ggtgaagaaa tctcatattc tggtatatta     6180

aatttcaata ataaaattta ctattttgat gattcattta cagctgtagt tggatggaaa     6240

gatttagagg atggttcaaa gtattatttt gatgaagata cagcagaagc atatataggt     6300

ttgtcattaa taaatgatgg tcaatattat tttaatgatg atggaattat gcaagttgga     6360

tttgtcacta taaatgataa agtcttctac ttttctgact ctggaattat agaatctgga     6420

gtacaaaaca tagatgacaa ttatttctat atagatgata atggtatagt tcaaattggt     6480

gtatttgata cttcagatgg atataaatat tttgcacctg ctaatactgt aaatgataat     6540

atttacggac aagcagttga atatagtggt ttagttagag ttggggaaga tgtatattat     6600

tttggagaaa catatacaat tgagactgga tggatatatg atatggaaaa tgaaagtgat     6660

aaatattatt tcaatccaga aactaaaaaa gcatgcaaag gtattaattt aattgatgat     6720

ataaaatatt attttgatga gaagggcata atgagaacgg gtcttatatc atttgaaaat     6780

aataattatt actttaatga gaatggtgaa atgcaatttg gttatataaa tatagaagat     6840

aagatgttct attttggtga agatggtgtc atgcagattg gagtatttaa tacaccagat     6900

ggatttaaat actttgcaca tcaaaatact ttggatgaga attttgaggg agaatcaata     6960

aactatactg gttggttaga tttagatgaa aagagatatt attttacaga tgaatatatt     7020

gcagcaactg gttcagttat tattgatggt gaggagtatt attttgatcc tgatacagct     7080

caattagtga ttagtgaata g                                               7101


<210>  9
<211>  1392
<212>  DNA
<213>  Clostridioides difficile

<400>  9
atgaaaaaat ttagaaaaca taaaagtatt agtaattgta tatctatatt gttgatatta       60

tatctaactt taggtagttt gttacctaat aacatttatg cacaagactt acaaagctat      120

agtgaaaaag tttgcaatac tacttacaag gctcctatag aaagaccaga agattttctt      180

aaagataaag aaagggctaa agaatgggaa agaaaagaag cagaaagaat agagcaaaaa      240

cttgaaagat ctgaaaaaga agcattagaa tcatataaaa aagattctgt agaaataaat      300

aaatattctc agacaagaaa ttatttttat gattatcaaa tagaagcaaa ttctcgagaa      360

aaagaatata gagaacttcg aaatgctata tcaaaaaata aaatagataa acctatgtat      420

gtctattatt ttgaatctcc agaaaaattt gcatttaata aagtaataag aacagaaaat      480

caaaacgaaa tttcattaga aaaatttaat gagtttaaag aaactataca aaacaaatta      540

tttaagcaag atggatttaa agaaatttct ttatatgaac ctggaaaagg tgatgaagaa      600

cctacaccat tacttatgca cttaaaatta cctagaaata ctggtatgtt accatataca      660

aatactaaca atgtaagtac attaatagag caaggatata gtataaaaat agataaaatt      720

gttcgtatag ttatagatgg gaaacattat attaaagcag aagcatctgt tgtaagtagt      780

cttgatttta aggatgatgt aagtaagggg gactcttggg gtaaagcaaa ttataatgat      840

tggagtaata aattaacacc taatgaactt gctgatgtaa atgattatat gcgtggagga      900

tatactgcaa ttaataatta tttaatatca aatggtccag taaataaccc taacccagaa      960

ttagattcta aaatcacaaa cattgaaaat gcattaaaac gtgaacctat tccaactaat     1020

ttaactgtat atagaagatc tggtcctcaa gaatttggtt taacccttac ttcccctgaa     1080

tatgatttta acaaaccaga aaatatagat gcttttaaat caaaatggga aggacaaaca     1140

ctgtcttatc caaactttat tagtactagt attggtagtg tgaatatgag tgcatttgct     1200

aaaagaaaaa tagtactacg tataactata cctaaaggtt ctcctggagc ctatctatca     1260

gctattccag gttatgcagg tgaatatgaa gtacttttaa atcatggaag caaatttaaa     1320

atcagtaaaa ttgattctta caaagatggc gctataacaa aattaattgt tgatgcaaca     1380

ttgatacctt aa                                                         1392


<210>  10
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Exemplary cdtB FRET cassette


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Redmond Red fluorophore labeled

<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  Eclipse Quencher

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  3'-terminal Hexanediol

<400>  10
tctagccggt tttccggctg agacgtccgt ggcct                                  35


<210>  11
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Exemplary tcdC FRET cassette


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Hexochloro-Fluorescein labeled

<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  Blackberry Quencher 650 dT

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  11
tcttagccgg ttttccggct gagacctcgg cgcg                                   34


<210>  12
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Exemplary tcdB/tcdA FRET cassette


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  Fluorescein labeled

<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  Blackberry Quencher 650 dT

<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  3'-terminal Hexanediol

<400>  12
tcttagccgg ttttccggct gagactccgc gtccgt                                 36


<210>  13
<211>  53
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Forward Primer

<400>  13
gagcaaggat atagtataaa aatagataaa attgttcgta tagttataga tgg              53


<210>  14
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Invader

<400>  14
tatattaaag cagaagcatc tgttgtaagt agtcttgt                               38


<210>  15
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Invader

<400>  15
tatattaaag cagaagcatc tgttgtaagt agtcttgc                               38


<210>  16
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtA probe

<400>  16
attttaagga tgatgtaagt aagggag                                           27


<210>  17
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtA probe

<400>  17
cgattttaag gatgatgtaa gtaaggg                                           27


<210>  18
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Primary Probe


<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  18
cgcgaggccg attttaagga tgatgtaagt aagggag                                37


<210>  19
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Primary Probe


<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  3'-terminal Hexanediol

<400>  19
aggccacgga cgattttaag gatgatgtaa gtaagggag                              39


<210>  20
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Primary Probe


<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  20
aggccacgga cgattttaag gatgatgtaa gtaaggg                                37


<210>  21
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  21
actccaatca ctataatttg ctttacccca ag                                     32


<210>  22
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  22
cgcatataat catttacatc agcaagttca ttaggt                                 36


<210>  23
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  23
atttgcttta ccccaagagt ctccc                                             25


<210>  24
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  24
gctttacccc aagagtctcc c                                                 21


<210>  25
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  25
actccaatca ctataatttg ctttacccca agagtc                                 36


<210>  26
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  26
caatcactat aatttgcttt accccaagag tc                                     32


<210>  27
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  27
aggtgttaat ttattactcc aatcactata atttgcttta cc                          42


<210>  28
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  28
tgttaattta ttactccaat cactataatt tgctttacc                              39


<210>  29
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtA Reverse Primer

<400>  29
gttcattagg tgttaattta ttactccaat cactataatt tgc                         43


<210>  30
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer

<400>  30
gttgatgtct gattgggaag acgaagattt gg                                     32


<210>  31
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer

<400>  31
tttgacccaa ggttgatgtc tgattgg                                           27


<210>  32
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer

<400>  32
gacccaaggt tgatgtctga ttgg                                              24


<210>  33
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Forward Primer

<400>  33
ctttgaccca aggttgatgt ctgattgg                                          28


<210>  34
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtB probe

<400>  34
cgttcatatg aatctggtat attatcatta tc                                     32


<210>  35
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtB probe

<400>  35
gttcatatga atctggtata ttatcattat ct                                     32


<210>  36
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtB probe

<400>  36
cgttcatatg aatctggtat attatc                                            26


<210>  37
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (44)..(44)
<223>  3'-terminal Hexanediol

<400>  37
aggccacgga cgcgttcata tgaatctggt atattatcat tatc                        44


<210>  38
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (44)..(44)
<223>  3'-terminal Hexanediol

<400>  38
aggccacgga cggttcatat gaatctggta tattatcatt atct                        44


<210>  39
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  3'-terminal Hexanediol

<400>  39
aggccacgga cgcgttcata tgaatctggt atattatc                               38


<210>  40
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Reverse iPrimer

<400>  40
cacttaactg caattaagtc cttaatagta tatccatttc                             40


<210>  41
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Reverse iPrimer

<400>  41
acttaactgc aattaagtcc ttaatagtat atccatttcg                             40


<210>  42
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Invader

<400>  42
acttaactgc aattaagtcc ttaatagtat atccatttct                             40


<210>  43
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtB probe

<400>  43
ggaagacgaa gatttggata c                                                 21


<210>  44
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtB probe

<400>  44
gatacagata atgataatat accagattca tat                                    33


<210>  45
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for cdtB probe

<400>  45
gttcatatga atctggtata ttatcattat ct                                     32


<210>  46
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  46
cgcgaggccg ggaagacgaa gatttggata c                                      31


<210>  47
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (43)..(43)
<223>  3'-terminal Hexanediol

<400>  47
cgcgaggccg gatacagata atgataatat accagattca tat                         43


<210>  48
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (42)..(42)
<223>  3'-terminal Hexanediol

<400>  48
cgcgaggccg gttcatatga atctggtata ttatcattat ct                          42


<210>  49
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Reverse Primer

<400>  49
cataatctgt atatggatct ccagcagtat ttgactc                                37


<210>  50
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Reverse Primer

<400>  50
gactctaaat aatttgatac atatttctta tagccttgtt ctgc                        44


<210>  51
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe

<400>  51
ggaagacgaa gatttggata c                                                 21


<210>  52
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe

<400>  52
ggaagacgaa gatttggata ca                                                22


<210>  53
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  53
aggccacgga cgggaagacg aagatttgga tac                                    33


<210>  54
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Primary Probe


<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  54
aggccacgga cgggaagacg aagatttgga taca                                   34


<210>  55
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Forward Primer

<400>  55
gatccattta tcccaaataa c                                                 21


<210>  56
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cdtB Reverse Primer

<400>  56
catatttctt atagccttgt tctg                                              24


<210>  57
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdA Probe

<400>  57
gaataaactt aggtgcagca a                                                 21


<210>  58
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Primary Probe


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  58
tccgcgcgtc cgaataaact taggtgcagc aa                                     32


<210>  59
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Forward Primer

<400>  59
ctttatgctc aactatttag tac                                               23


<210>  60
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Forward Primer

<400>  60
cagtaaatga tactataaat gtactac                                           27


<210>  61
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdA Probe

<400>  61
ctagacgaac atgacccat                                                    19


<210>  62
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  62
acggacgcgg agctagacga acatgaccca t                                      31


<210>  63
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Invader


<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  RNA

<400>  63
ataaacttag gtgcagcaat taaggaatta a                                      31


<210>  64
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Forward iPrimer

<400>  64
cagaggggat acctattgta tctactatat tagacgg                                37


<210>  65
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Forward iPrimer

<400>  65
gaggggatac ctattgtatc tactatatta gacgg                                  35


<210>  66
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdA Probe

<400>  66
ctagacgaac atgacccat                                                    19


<210>  67
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdA Probe

<400>  67
gaataaactt aggtgcagca a                                                 21


<210>  68
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  3'-terminal Hexanediol

<400>  68
cgcgccgagg ctagacgaac atgacccat                                         29


<210>  69
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  69
acggacgcgg aggaataaac ttaggtgcag caa                                    33


<210>  70
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Reverse Primer

<400>  70
gtaacttcag cacctattcc aacaattgaa gctac                                  35


<210>  71
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Reverse Primer

<400>  71
agtaatgggt catgttcgtc tagtaattcc                                        30


<210>  72
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Reverse Primer

<400>  72
gacatattta ttgctaaaac acccacctta gcttc                                  35


<210>  73
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdA Reverse Primer

<400>  73
gatataccag ctataggtaa taag                                              24


<210>  74
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117 Invader


<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  RNA

<400>  74
ggtgaggata tattgccaaa aaacacgcg                                         29


<210>  75
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117 Invader


<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  RNA

<400>  75
acaaagggta ttgctctact ggcatttatt ttc                                    33


<210>  76
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117 Iprimer


<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  n is a, c, g, or t

<400>  76
acaaagggta ttgctctact ggcatttatt ttn                                    33


<210>  77

<400>  77
000

<210>  78

<400>  78
000

<210>  79

<400>  79
000

<210>  80

<400>  80
000

<210>  81

<400>  81
000

<210>  82

<400>  82
000

<210>  83

<400>  83
000

<210>  84

<400>  84
000

<210>  85

<400>  85
000

<210>  86
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Invader


<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  RNA

<400>  86
ggtgaggata tattgccaaa aaacacacg                                         29


<210>  87
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  87
ggtgaggata tattgccaaa aaacacacca                                        30


<210>  88
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  88
ggtgaggata tattgccaaa aaacacacc                                         29


<210>  89
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  89
ggtgaggata tattgccaaa aaacacgc                                          28


<210>  90
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  90
ggtgaggata tattgccaaa aaacacac                                          28


<210>  91
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  91
ggtgaggata tattgccaaa aaacacg                                           27


<210>  92
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  92
ggtgaggata tattgccaaa aaacaca                                           27


<210>  93
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  93
caaaataaat gccagtagag c                                                 21


<210>  94
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  94
aaaataaatg ccagtagagc aatat                                             25


<210>  95
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  95
aaaataaatg ccagtagagc aatatc                                            26


<210>  96
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  96
caaaataaat gccagtagag                                                   20


<210>  97
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  97
caaaataaat gccagtaga                                                    19


<210>  98
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  98
caaaataaat gccagtagag caa                                               23


<210>  99
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  99
caaaataaat gccagtagag caatac                                            26


<210>  100
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  100
caaataaatg ccagtagagc aa                                                22


<210>  101
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  101
caataaatgc cagtagagca a                                                 21


<210>  102
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  102
cataaatgcc agtagagcaa                                                   20


<210>  103
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is U

<400>  103
caaaanaaat gccagtagag caa                                               23


<210>  104
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  n is 2-O-Methyladenosine

<400>  104
caanataaat gccagtagag caa                                               23


<210>  105
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  n is 2-O-Methyladenosine

<400>  105
canaataaat gccagtagag caa                                               23


<210>  106
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<400>  106
caaanaaatg ccagtagagc aa                                                22


<210>  107
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  n is U

<400>  107
caanaaatgc cagtagagca a                                                 21


<210>  108
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  n is U

<400>  108
canaaatgcc agtagagcaa                                                   20


<210>  109
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<400>  109
caannaaatg ccagtagagc aa                                                22


<210>  110
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<400>  110
caaannaatg ccagtagagc aa                                                22


<210>  111
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<400>  111
caannnaatg ccagtagagc aa                                                22


<210>  112
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is 2-O-Methyladenosine

<400>  112
cnaataaatg ccagtagagc aa                                                22


<210>  113
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is 2-O-Methyladenosine

<400>  113
cnaaataaat gccagtagag caa                                               23


<210>  114
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<400>  114
cnaanaaatg ccagtagagc aa                                                22


<210>  115
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is U

<400>  115
cnaaanaaat gccagtagag caa                                               23


<210>  116
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<400>  116
caaannaatg ccagtagagc aata                                              24


<210>  117
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<400>  117
caaannaatg ccagtagagc aatac                                             25


<210>  118
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<400>  118
caaannaatg ccagtagagc aatacc                                            26


<210>  119
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<400>  119
caaannaatg ccagtagagc aataccc                                           27


<210>  120
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (11)..(12)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (20)..(20)
<223>  n is 5-methylated cytosine

<400>  120
caaannaatg nnagtagagn aata                                              24


<210>  121
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (11)..(12)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (20)..(20)
<223>  n is 5-methylated cytosine

<400>  121
naaannaatg nnagtagagn aata                                              24


<210>  122
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is U

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 2-O-Methyladenosine

<400>  122
naaannaatg ccagtagagc aata                                              24


<210>  123
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  123
caaaataaat gccagtagag c                                                 21


<210>  124
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  124
caaaataaat gccagtagag c                                                 21


<210>  125
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  125
caaaataaat gccagtagag                                                   20


<210>  126
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  126
caaaataaat gccagtaga                                                    19


<210>  127
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  127
aaaataaatg ccagtagagc aatac                                             25


<210>  128
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  128
aaaataaatg ccagtagagc aatat                                             25


<210>  129
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe

<400>  129
aaaataaatg ccagtagagc aatatc                                            26


<210>  130
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with abasic linker


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  (abasic)-linker follows position 1

<400>  130
caaataaatg ccagtagagc aa                                                22


<210>  131
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with abasic linker


<220>
<221>  misc_feature
<222>  (2)..(3)
<223>  (abasic)-linker follows position 2

<400>  131
caaataaatg ccagtagagc aa                                                22


<210>  132
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with C9 linker


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  (sp9)-linker follows position 1

<400>  132
caaataaatg ccagtagagc aa                                                22


<210>  133
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with C9 linker


<220>
<221>  misc_feature
<222>  (2)..(3)
<223>  (sp9)-linker follows position 2

<400>  133
caaataaatg ccagtagagc aa                                                22


<210>  134
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with abasic linker


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  (abasic)-linker follows position 1

<400>  134
caaataaatg ccagtagagc                                                   20


<210>  135
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with abasic linker


<220>
<221>  misc_feature
<222>  (2)..(3)
<223>  (abasic)-linker follows position 2

<400>  135
caaataaatg ccagtagagc                                                   20


<210>  136
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with C9 linker


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  (sp9)-linker follows position 1

<400>  136
caaataaatg ccagtagagc                                                   20


<210>  137
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Probe with C9 linker


<220>
<221>  misc_feature
<222>  (2)..(3)
<223>  (sp9)-linker follows position 2

<400>  137
caaataaatg ccagtagagc                                                   20


<210>  138
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  138
cgcgccgagg caaaataaat gccagtagag c                                      31


<210>  139
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  3'-terminal Hexanediol

<400>  139
cgcgccgagg aaaataaatg ccagtagagc aatat                                  35


<210>  140
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  3'-terminal Hexanediol

<400>  140
cgcgccgagg aaaataaatg ccagtagagc aatatc                                 36


<210>  141
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  3'-terminal Hexanediol

<400>  141
cgcgccgagg caaaataaat gccagtagag                                        30


<210>  142
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  3'-terminal Hexanediol

<400>  142
cgcgccgagg caaaataaat gccagtaga                                         29


<210>  143
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  143
cgcgccgagg caaaataaat gccagtagag caa                                    33


<210>  144
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  3'-terminal Hexanediol

<400>  144
cgcgccgagg caaaataaat gccagtagag caatac                                 36


<210>  145
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  145
cgcgccgagg caaataaatg ccagtagagc aa                                     32


<210>  146
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  146
cgcgccgagg caataaatgc cagtagagca a                                      31


<210>  147
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  3'-terminal Hexanediol

<400>  147
cgcgccgagg cataaatgcc agtagagcaa                                        30


<210>  148
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is U

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  148
cgcgccgagg caaaanaaat gccagtagag caa                                    33


<210>  149
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  149
cgcgccgagg caanataaat gccagtagag caa                                    33


<210>  150
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  150
cgcgccgagg canaataaat gccagtagag caa                                    33


<210>  151
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  151
cgcgccgagg caaanaaatg ccagtagagc aa                                     32


<210>  152
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is U

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  152
cgcgccgagg caanaaatgc cagtagagca a                                      31


<210>  153
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n is U

<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  3'-terminal Hexanediol

<400>  153
cgcgccgagg canaaatgcc agtagagcaa                                        30


<210>  154
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  154
cgcgccgagg caannaaatg ccagtagagc aa                                     32


<210>  155
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is U

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  155
cgcgccgagg caaannaatg ccagtagagc aa                                     32


<210>  156
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  156
cgcgccgagg caannnaatg ccagtagagc aa                                     32


<210>  157
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  157
cgcgccgagg cnaataaatg ccagtagagc aa                                     32


<210>  158
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  158
cgcgccgagg cnaaataaat gccagtagag caa                                    33


<210>  159
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  159
cgcgccgagg cnaanaaatg ccagtagagc aa                                     32


<210>  160
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is U

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  160
cgcgccgagg cnaaanaaat gccagtagag caa                                    33


<210>  161
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  161
cgcgccgagg caaannaatg ccagtagagc aata                                   34


<210>  162
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  3'-terminal Hexanediol

<400>  162
cgcgccgagg caaannaatg ccagtagagc aatac                                  35


<210>  163
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  3'-terminal Hexanediol

<400>  163
cgcgccgagg caaannaatg ccagtagagc aatacc                                 36


<210>  164
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  164
cgcgccgagg caaannaatg ccagtagagc aataccc                                37


<210>  165
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (21)..(22)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  165
cgcgccgagg caaannaatg nnagtagagn aata                                   34


<210>  166
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (11)..(11)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (21)..(22)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  166
cgcgccgagg naaannaatg nnagtagagn aata                                   34


<210>  167
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe w/methoxy


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (11)..(11)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is U

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2-O-Methyladenosine

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  167
cgcgccgagg naaannaatg ccagtagagc aata                                   34


<210>  168
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(14)
<223>  RNA

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  3'-terminal Hexanediol

<400>  168
atgacgtggc agaccaaaat aaatgccagt agagc                                  35


<210>  169
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  169
acggacgcgg agcaaaataa atgccagtag agc                                    33


<210>  170
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  170
acggacgcgg agcaaaataa atgccagtag ag                                     32


<210>  171
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  171
acggacgcgg agcaaaataa atgccagtag a                                      31


<210>  172
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  172
acggacgcgg agaaaataaa tgccagtaga gcaatac                                37


<210>  173
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  173
acggacgcgg agaaaataaa tgccagtaga gcaatat                                37


<210>  174
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  3'-terminal Hexanediol

<400>  174
acggacgcgg agaaaataaa tgccagtaga gcaatatc                               38


<210>  175
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with abasic linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  (abasic)-linker follows position 13

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  175
acggacgcgg agcaaataaa tgccagtaga gcaa                                   34


<210>  176
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with abasic linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  (abasic)-linker follows position 14

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  176
acggacgcgg agcaaataaa tgccagtaga gcaa                                   34


<210>  177
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with C9 linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  (sp9)-linker follows position 13

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  177
acggacgcgg agcaaataaa tgccagtaga gcaa                                   34


<210>  178
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with C9 linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  (sp9)-linker follows position 14

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  178
acggacgcgg agcaaataaa tgccagtaga gcaa                                   34


<210>  179
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with abasic linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  (abasic)-linker follows position 13

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  179
acggacgcgg agcaaataaa tgccagtaga gc                                     32


<210>  180
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with abasic linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  (abasic)-linker follows position 14

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  180
acggacgcgg agcaaataaa tgccagtaga gc                                     32


<210>  181
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with C9 linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (13)..(14)
<223>  (sp9)-linker follows position 13

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  181
acggacgcgg agcaaataaa tgccagtaga gc                                     32


<210>  182
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe with C9 linker


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (14)..(15)
<223>  (sp9)-linker follows position 14

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  182
acggacgcgg agcaaataaa tgccagtaga gc                                     32


<210>  183
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Invader


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  RNA

<400>  183
acaaagggta ttgctctact ggcatttatt tc                                     32


<210>  184
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  RNA

<400>  184
tggtgtgttt tttggcaata t                                                 21


<210>  185
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  RNA

<400>  185
ggtgtgtttt ttggcaatat atc                                               23


<210>  186
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Primary Probe

<400>  186
ggtgtgtttt ttggcaatat                                                   20


<210>  187
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 117del Primary Probe

<400>  187
ggtgtgtttt ttggcaatat atc                                               23


<210>  188
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  188
acggacgcgg agtggtgtgt tttttggcaa tat                                    33


<210>  189
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(14)
<223>  RNA

<220>
<221>  misc_feature
<222>  (17)..(17)
<223>  RNA

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  189
atgacgtggc agacggtgtg ttttttggca atatatc                                37


<210>  190
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(14)
<223>  RNA

<220>
<221>  misc_feature
<222>  (17)..(17)
<223>  RNA

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  190
atgacgtggc agacggtgtg ttttttggca atat                                   34


<210>  191
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  RNA

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  3'-terminal Hexanediol

<400>  191
acggacgcgg agggtgtgtt ttttggcaat atatc                                  35


<210>  192
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  192
ggtgaggata tattgccaaa aaacacgcc                                         29


<210>  193
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 117del Reverse iPrimer

<400>  193
ggtgaggata tattgccaaa aaacacgcca                                        30


<210>  194
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183/184 Invader


<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  RNA

<400>  194
ctgaagacca tgaggaggtc atttctaata                                        30


<210>  195
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183/184 Invader

<400>  195
gttctgaaga ccatgaggag gtcatttcta ag                                     32


<210>  196
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183/184 Invader

<400>  196
gttctgaaga ccatgaggag gtcatttcta atg                                    33


<210>  197
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183/184 CC>TT Primary Probe

<400>  197
ttaaacatca gttatagatt ctc                                               23


<210>  198
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183/184 CC>TT Primary Probe

<400>  198
taaacatcag ttatagattc tc                                                22


<210>  199
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183/184 CC>TT Primary Probe

<400>  199
ttaaacatca gttatagatt ctc                                               23


<210>  200
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183/184 CC>TT Primary Probe


<220>
<221>  misc_feature
<222>  (5)..(5)
<223>  n is 5-methylated cytosine

<400>  200
taaanatcag ttatagattc tc                                                22


<210>  201
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183/184 CC>TT Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  201
cgcgccgagg ttaaacatca gttatagatt ctc                                    33


<210>  202
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183/184 CC>TT Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  202
cgcgccgagg taaacatcag ttatagattc tc                                     32


<210>  203
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183/184 CC>TT Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  203
cgcgccgagg ttaaacatca gttatagatt ctc                                    33


<210>  204
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183/184 CC>TT Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  204
cgcgccgagg taaanatcag ttatagattc tc                                     32


<210>  205
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184 Invader


<220>
<221>  misc_feature
<222>  (41)..(41)
<223>  RNA

<400>  205
gtttctattt ctgttttttg agaatctata actgatgttt t                           41


<210>  206
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183C>T 184C>T Primary Probe

<400>  206
aattagaaat gacctcctca tgg                                               23


<210>  207
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183C>T 184C>T Primary Probe

<400>  207
attagaaatg acctcctcat ggt                                               23


<210>  208
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183C>T 184C>T Primary Probe

<400>  208
aattagaaat gacctcctc                                                    19


<210>  209
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183C>T 184C>T Primary Probe

<400>  209
attagaaatg acctcctc                                                     18


<210>  210
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183C>T 184C>T Primary Probe

<400>  210
aattagaaat gacctcctca tgg                                               23


<210>  211
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183C>T 184C>T Primary Probe

<400>  211
aattagaaat gacctcctca tgg                                               23


<210>  212
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 183C>T 184C>T Primary Probe

<400>  212
attagaaatg acctcctcat ggt                                               23


<210>  213
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183C>T 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  213
cgcgccgagg aattagaaat gacctcctca tgg                                    33


<210>  214
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183C>T 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  214
cgcgccgagg attagaaatg acctcctcat ggt                                    33


<210>  215
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183C>T 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  3'-terminal Hexanediol

<400>  215
cgcgccgagg aattagaaat gacctcctc                                         29


<210>  216
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183C>T 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (28)..(28)
<223>  3'-terminal Hexanediol

<400>  216
cgcgccgagg attagaaatg acctcctc                                          28


<210>  217
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183C>T 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(14)
<223>  RNA

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  217
atgacgtggc agacaattag aaatgacctc ctcatgg                                37


<210>  218
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183C>T 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  3'-terminal Hexanediol

<400>  218
acggacgcgg agaattagaa atgacctcct catgg                                  35


<210>  219
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183C>T 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  3'-terminal Hexanediol

<400>  219
acggacgcgg agattagaaa tgacctcctc atggt                                  35


<210>  220
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 183T Forward iPrimer (+)

<400>  220
cttgttctga agaccatgag gaggtcattt ctaat                                  35


<210>  221
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184 Forward iPrimer (-)

<400>  221
gtttctattt ctgttttttg agaatctata actgatgttt aa                          42


<210>  222
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184 Forward Primer

<400>  222
gcaatatatc ctcaccagct tgttctgaag                                        30


<210>  223
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184 Invader

<400>  223
gaagaccatg aggaggtcat ttctaaca                                          28


<210>  224

<400>  224
000

<210>  225
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184 Iprimer 2 (-)

<400>  225
gtttctattt ctgttttttg agaatctata actgatgttt a                           41


<210>  226

<400>  226
000

<210>  227

<400>  227
000

<210>  228

<400>  228
000

<210>  229

<400>  229
000

<210>  230

<400>  230
000

<210>  231

<400>  231
000

<210>  232

<400>  232
000

<210>  233
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 184C>T Primary Probe

<400>  233
agttagaaat gacctcctca tg                                                22


<210>  234
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 184C>T Primary Probe

<400>  234
taaacatcag ttatagattc tcaaaaagc                                         29


<210>  235
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 184C>T Primary Probe

<400>  235
taaacatcag ttatagattc tcaaaaagc                                         29


<210>  236
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 184C>T Primary Probe

<400>  236
agttagaaat gacctcctca tg                                                22


<210>  237
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdC 184C>T Primary Probe

<400>  237
taaacatcag ttatagattc tc                                                22


<210>  238
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(14)
<223>  RNA

<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  3'-terminal Hexanediol

<400>  238
atgacgtggc agacagttag aaatgacctc ctcatg                                 36


<210>  239
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(14)
<223>  RNA

<220>
<221>  misc_feature
<222>  (43)..(43)
<223>  3'-terminal Hexanediol

<400>  239
atgacgtggc agactaaaca tcagttatag attctcaaaa agc                         43


<210>  240
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (41)..(41)
<223>  3'-terminal Hexanediol

<400>  240
acggacgcgg agtaaacatc agttatagat tctcaaaaag c                           41


<210>  241
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  241
acggacgcgg agagttagaa atgacctcct catg                                   34


<210>  242
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC 184C>T Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  242
acggacgcgg agtaaacatc agttatagat tctc                                   34


<210>  243
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Forward Primer

<400>  243
ggaaaaggaa gctctaagaa aataattaaa ttctttaaga gc                          42


<210>  244
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Forward Primer

<400>  244
ggaagctcta agaaaataat taaattcttt aagagcacaa aggg                        44


<210>  245
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Forward Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 5-methylated cytosine

<400>  245
ggtaangaat ttagtaatga a                                                 21


<210>  246
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Forward Primer


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 5-methylated cytosine

<400>  246
ggtaangaat ttagtaatga a                                                 21


<210>  247
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Forward Primer

<400>  247
ggaagctcta agaaaataat taaattcttt aagagcacaa agg                         43


<210>  248
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Forward Primer

<400>  248
ggtaacgaat ttagtaatga aggaaaagga agc                                    33


<210>  249
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  249
gttcagcatc agacaatttg ctatttaaag tttctatttc                             40


<210>  250
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  250
gaaccatggt tcagcatcag acaatttgc                                         29


<210>  251
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  251
ctttcttttc gtcgtctttc attttgaacc atgg                                   34


<210>  252
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  252
caatagcttt cttttcgtcg tctttcattt tgaacc                                 36


<210>  253
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  253
tcataagtaa taccagtatc atatc                                             25


<210>  254
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  254
tcataagtaa taccagtatc atatcc                                            26


<210>  255
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  255
gtcgtctttc attttgaacc atggttcagc                                        30


<210>  256
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  256
gtttctattt ctgttttttg agaatctata actgatgttt ga                          42


<210>  257
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  257
cctcctcatg gtcttcagaa caag                                              24


<210>  258
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  258
cctcctcatg gtcttcagaa caagc                                             25


<210>  259
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdC Reverse Primer

<400>  259
gacctcctca tggtcttcag aacaag                                            26


<210>  260
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward iPrimer

<400>  260
gtaagtttag gtgcagcaat caaagagct                                         29


<210>  261
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward iPrimer

<400>  261
gtaagtttag gtgcagcaat caaagagtt                                         29


<210>  262
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward iPrimer

<400>  262
ggattacctg taattgctac tattatagat ggtgtaagt                              39


<210>  263
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward iPrimer

<400>  263
gattacctgt aattgctact attatagatg gtgtaagt                               38


<210>  264
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  264
gtgtaagttt aggtgcagca atcaaagag                                         29


<210>  265
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  265
ggtgcagcaa tcaaagag                                                     18


<210>  266
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  266
tggtgtaagt ttaggtgcag caatcaaaga g                                      31


<210>  267
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  267
gattggaggt caaataaatg acactgctat taat                                   34


<210>  268
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  268
atagatggtg taagtttagg tgcagcaatc                                        30


<210>  269
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  269
tggtgtaagt ttaggtgcat caattaaaga g                                      31


<210>  270
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  270
ggtgcagcaa tcaaagagct aagtg                                             25


<210>  271
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  271
gtaagtttag gtgcatcaat taaagagttg agtg                                   34


<210>  272
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  272
gtgtaagttt aggtgcatca attaaagagt tgagtg                                 36


<210>  273
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  273
gtggatttag tatactttta gttc                                              24


<210>  274
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  274
gtattaccta atgctccaaa tagagtattt gcttg                                  35


<210>  275
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  275
cctaatgccc cagatagagt atttggctg                                         29


<210>  276
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  276
gccccagata gaatctttgg ctg                                               23


<210>  277
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  277
ctaatgcccc agatagaatc tttggctg                                          28


<210>  278
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  278
cttgatttgt caaaagattt aatg                                              24


<210>  279
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (11)..(11)
<223>  n is 5-methylated cytosine

<400>  279
nttgatttat naaaagattt aatg                                              24


<210>  280
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Invader

<400>  280
tttactgcca ttatacctat cttagcttct attta                                  35


<210>  281
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  281
cttgtcttaa taatgggtca ct                                                22


<210>  282
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  282
taattatata aatcaatgga aagatgtaaa tagtg                                  35


<210>  283
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  283
gggaaagagg atggacg                                                      17


<210>  284
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  284
gggaaagagg atggacgc                                                     18


<210>  285
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  285
gggaaagagg atggac                                                       16


<210>  286
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  286
gggaaagagg atggacgcca g                                                 21


<210>  287
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  287
gggaaacagg atggacacc                                                    19


<210>  288
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  288
gggaaagagg atggacgcc                                                    19


<210>  289
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  289
attatagtca ctatttacat ctttccattg atttatat                               38


<210>  290
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  290
caaagagcta agtgaaacca gtgac                                             25


<210>  291
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  291
caaagagcta agtgaaacca gtgacc                                            26


<210>  292
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  292
caaagagcta agtgaaacca gtgaccc                                           27


<210>  293
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  293
taagtgaaac cagtgaccca ttattaagac                                        30


<210>  294
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  294
cttgtcttaa taatgggtca ct                                                22


<210>  295
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  295
tgagtgaaac cagtgaccca ttattaagac                                        30


<210>  296
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  296
tttaggtgca tcaattaaag agttg                                             25


<210>  297
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe

<400>  297
tttaggtgca gcaattaaag agtta                                             25


<210>  298
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  THS for tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (19)..(19)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (21)..(21)
<223>  n is 5-methylated cytosine

<400>  298
cttgtnttaa taatgggtna nt                                                22


<210>  299
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(10)
<223>  RNA

<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  3'-terminal Hexanediol

<400>  299
cgcgccgagg cttgtcttaa taatgggtca ct                                     32


<210>  300
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (47)..(47)
<223>  3'-terminal Hexanediol

<400>  300
acggacgcgg agtaattata taaatcaatg gaaagatgta aatagtg                     47


<210>  301
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  3'-terminal Hexanediol

<400>  301
acggacgcgg aggggaaaga ggatggacg                                         29


<210>  302
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  3'-terminal Hexanediol

<400>  302
acggacgcgg aggggaaaga ggatggacgc                                        30


<210>  303
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (28)..(28)
<223>  3'-terminal Hexanediol

<400>  303
acggacgcgg aggggaaaga ggatggac                                          28


<210>  304
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  3'-terminal Hexanediol

<400>  304
acggacgcgg aggggaaaga ggatggacgc cag                                    33


<210>  305
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  305
acggacgcgg aggggaaaca ggatggacac c                                      31


<210>  306
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  3'-terminal Hexanediol

<400>  306
acggacgcgg aggggaaaga ggatggacgc c                                      31


<210>  307
<211>  50
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (50)..(50)
<223>  3'-terminal Hexanediol

<400>  307
acggacgcgg agattatagt cactatttac atctttccat tgatttatat                  50


<210>  308
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  308
acggacgcgg agcaaagagc taagtgaaac cagtgac                                37


<210>  309
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  3'-terminal Hexanediol

<400>  309
acggacgcgg agcaaagagc taagtgaaac cagtgacc                               38


<210>  310
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  3'-terminal Hexanediol

<400>  310
acggacgcgg agcaaagagc taagtgaaac cagtgaccc                              39


<210>  311
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (42)..(42)
<223>  3'-terminal Hexanediol

<400>  311
acggacgcgg agtaagtgaa accagtgacc cattattaag ac                          42


<210>  312
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  312
acggacgcgg agcttgtctt aataatgggt cact                                   34


<210>  313
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (42)..(42)
<223>  3'-terminal Hexanediol

<400>  313
acggacgcgg agtgagtgaa accagtgacc cattattaag ac                          42


<210>  314
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  314
acggacgcgg agtttaggtg catcaattaa agagttg                                37


<210>  315
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  3'-terminal Hexanediol

<400>  315
acggacgcgg agtttaggtg cagcaattaa agagtta                                37


<210>  316
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Primary Probe


<220>
<221>  misc_feature
<222>  (1)..(12)
<223>  RNA

<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (33)..(33)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (34)..(34)
<223>  3'-terminal Hexanediol

<400>  316
acggacgcgg agcttgtntt aataatgggt nant                                   34


<210>  317
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse iPrimer

<400>  317
tttactgcca ttatacctat cttagcttct atttc                                  35


<210>  318
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  318
ctgccattat acctatctta gcttctattt cttgtc                                 36


<210>  319
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  319
ctgccattat acctatctta gcttctattt cttg                                   34


<210>  320
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  320
ctgccattat acctattttt gcttctattt cttg                                   34


<210>  321
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  321
gtaagtttag gtgcatcaat taaagagtt                                         29


<210>  322
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  322
gaactaaaag tatactaaat ccactagc                                          28


<210>  323
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse iPrimer

<400>  323
tcaatgtgtt tatcaaaaat gcattactat cataaaaaac attaaca                     47


<210>  324
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse iPrimer

<400>  324
tttactgcca ttatacctat ttttgcttct atttc                                  35


<210>  325
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse iPrimer

<400>  325
tttactgcca ttatacctat tttggcttct atttc                                  35


<210>  326
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse iPrimer

<400>  326
gtttactgcc attataccta ttttggcttc tatttc                                 36


<210>  327
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  327
caatgtgttt atcaaaaatg cattactatc ataaaaaaca ttaacat                     47


<210>  328
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  328
ctatttcttg tcttaataat gggtcacttg tttcac                                 36


<210>  329
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  329
cttgtcttaa taatgggtca cttgtttcac                                        30


<210>  330
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  330
ctatttcttg tcttaataat gggtcactag tttcac                                 36


<210>  331
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  331
cttgtcttaa taatgggtca ctagtttcac                                        30


<210>  332
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  332
cctgctgaaa ttcctgctaa aggaactaaa agtatactaa atcc                        44


<210>  333
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  333
cctgctgaaa ttcctgctaa aggaactaaa agtatactaa atc                         43


<210>  334
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  334
acctgctgaa attcctgcta aaggaactaa aagtatac                               38


<210>  335
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  335
agttttgtac catcattttc taagcttctt aaacc                                  35


<210>  336
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  336
cagttttgtg ccatcatttt ctaagcttct taaacc                                 36


<210>  337
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer

<400>  337
ctcttatacg gtctaacag                                                    19


<210>  338
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Reverse Primer


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5-methylated cytosine

<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  n is 5-methylated cytosine

<400>  338
ntcttatang gtctaatag                                                    19


<210>  339
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  tcdB Forward Primer

<400>  339
tggattggag gtcaaataaa tgatactgct att                                    33


