                               SEQUENCE LISTING

<110> ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI
 
<120> METHODS FOR HIGH-RESOLUTION MICROBIOME ANALYSIS

<130> 242096.000034

<140> PCT/US2018/039678
<141> 2018-06-27

<150> 62/525,908
<151> 2017-06-28

<160> 64    

<170> PatentIn version 3.5

<210> 1
<211> 12
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 1
ccaynnnnnt cc                                                           12


<210> 2
<211> 12
<212> DNA
<213> Bacteroides thetaiotaomicron


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 2
ccannnnnnc at                                                           12


<210> 3
<211> 12
<212> DNA
<213> Bacteroides thetaiotaomicron


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 3
atgnnnnnnt gg                                                           12


<210> 4
<211> 11
<212> DNA
<213> Bacteroides sp.


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 4
cagnnnnngg a                                                            11


<210> 5
<211> 12
<212> DNA
<213> Bacteroides vulgatus


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 5
tcacnnnnna tg                                                           12


<210> 6
<211> 11
<212> DNA
<213> Bacteroides vulgatus


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 6
cacnnnnnat g                                                            11


<210> 7
<211> 13
<212> DNA
<213> Escherichia coli


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 7
gcacnnnnnn gtt                                                          13


<210> 8
<211> 13
<212> DNA
<213> Escherichia coli


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 8
aacnnnnnng tgc                                                          13


<210> 9
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteroidales (order) motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 9
ccasnnnnnn atgt                                                         14


<210> 10
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteroidales (order) motif


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 10
tcagnnnnnc ctc                                                          13


<210> 11
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteroidales (order) motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 11
ccagnnnnnn vtgg                                                         14


<210> 12
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteroidales (order) motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 12
ccagnnnnnn rtgg                                                         14


<210> 13
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Actinobacteria (phylum) motif


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 13
gattnnnnnc agt                                                          13


<210> 14
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Actinobacteria (phylum) motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 14
gattnnnnnn agt                                                          13


<210> 15
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteroidales (order) motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 15
agcannnnnn rtc                                                          13


<210> 16
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteroidales (order) motif


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 16
gacnnnnnnt gct                                                          13


<210> 17
<211> 11
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteroidales (order) motif


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 17
ccannnnntc g                                                            11


<210> 18
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteria (kingdom) motif


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 18
gaagnnnnna cgt                                                          13


<210> 19
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteria (kingdom) motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 19
cgagnnnnnn cctt                                                         14


<210> 20
<211> 12
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Proteobacteria (phylum) motif


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 20
gatcnnnnnw mt                                                           12


<210> 21
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Proteobacteria (phylum) motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 21
gatcnnnnnn wsa                                                          13


<210> 22
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteria (kingdom) motif


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 22
actnnnnnna atc                                                          13


<210> 23
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacteria (kingdom) motif


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 23
accannnnna atc                                                          13


<210> 24
<211> 11
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 24
aagnnnnnct t                                                            11


<210> 25
<211> 12
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 25
gaghnnnnnc tt                                                           12


<210> 26
<211> 12
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 26
cyannnnnnt ga                                                           12


<210> 27
<211> 12
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 27
tcannnnnnt rg                                                           12


<210> 28
<211> 12
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 28
aagnnnnnnc tc                                                           12


<210> 29
<211> 13
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (5)..(11)
<223> a, c, t, g, unknown or other

<400> 29
crtannnnnn ntc                                                          13


<210> 30
<211> 13
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (3)..(9)
<223> a, c, t, g, unknown or other

<400> 30
gannnnnnnt ayg                                                          13


<210> 31
<211> 12
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 31
cyannnnnnt tc                                                           12


<210> 32
<211> 12
<212> DNA
<213> Helicobacter pylori


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 32
gaannnnnnt rg                                                           12


<210> 33
<211> 15
<212> DNA
<213> Escherichia coli


<220>
<221> modified_base
<222> (4)..(10)
<223> a, c, t, g, unknown or other

<400> 33
tacnnnnnnn rtrtc                                                        15


<210> 34
<211> 15
<212> DNA
<213> Escherichia coli


<220>
<221> modified_base
<222> (6)..(12)
<223> a, c, t, g, unknown or other

<400> 34
gayaynnnnn nngta                                                        15


<210> 35
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 35
catannnnnn htc                                                          13


<210> 36
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (5)..(11)
<223> a, c, t, g, unknown or other

<400> 36
catannnnnn ntc                                                          13


<210> 37
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 37
ggannnnnng ttg                                                          13


<210> 38
<211> 12
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 38
cagnnnnnrt gt                                                           12


<210> 39
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 39
ytcannnnnn gtty                                                         14


<210> 40
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 40
gtannnnncg atc                                                          13


<210> 41
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 41
gatgnnnnnn tac                                                          13


<210> 42
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (3)..(3)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8)..(10)
<223> a, c, t, g, unknown or other

<400> 42
atnaaaannn ggt                                                          13


<210> 43
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(10)
<223> a, c, t, g, unknown or other

<400> 43
cagnnnnnnn gttc                                                         14


<210> 44
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 44
aagnnnnnnc atc                                                          13


<210> 45
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(10)
<223> a, c, t, g, unknown or other

<400> 45
tacnnnnnnn gttc                                                         14


<210> 46
<211> 16
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (5)..(12)
<223> a, c, t, g, unknown or other

<400> 46
craannnnnn nntayc                                                       16


<210> 47
<211> 14
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(10)
<223> a, c, t, g, unknown or other

<400> 47
cacnnnnnnn ctgg                                                         14


<210> 48
<211> 15
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (5)..(11)
<223> a, c, t, g, unknown or other

<400> 48
gaaynnnnnn nctgg                                                        15


<210> 49
<211> 13
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 49
gcannnnncg atc                                                          13


<210> 50
<211> 13
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 50
gcannnnnnc atc                                                          13


<210> 51
<211> 15
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(11)
<223> a, c, t, g, unknown or other

<400> 51
cgannnnnnn ntgcc                                                        15


<210> 52
<211> 12
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 52
acgnnnnngt tg                                                           12


<210> 53
<211> 15
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (5)..(11)
<223> a, c, t, g, unknown or other

<400> 53
ccagnnnnnn nrttc                                                        15


<210> 54
<211> 13
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (5)..(5)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7)..(9)
<223> a, c, t, g, unknown or other

<400> 54
gyacnannnr ttg                                                          13


<210> 55
<211> 13
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(5)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7)..(9)
<223> a, c, t, g, unknown or other

<400> 55
caannannng tvc                                                          13


<210> 56
<211> 13
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(6)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8)..(9)
<223> a, c, t, g, unknown or other

<400> 56
caannntnng tdc                                                          13


<210> 57
<211> 14
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 57
gaynnnnnnr tayc                                                         14


<210> 58
<211> 12
<212> DNA
<213> Klebsiella pneumoniae


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 58
acgnnnnnnc tg                                                           12


<210> 59
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 59
aacnnnnnng tgc                                                          13


<210> 60
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (5)..(10)
<223> a, c, t, g, unknown or other

<400> 60
gcacnnnnnn gtt                                                          13


<210> 61
<211> 12
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (5)..(9)
<223> a, c, t, g, unknown or other

<400> 61
tcacnnnnna tg                                                           12


<210> 62
<211> 11
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(8)
<223> a, c, t, g, unknown or other

<400> 62
cagnnnnngg a                                                            11


<210> 63
<211> 12
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 63
atgnnnnnnt gg                                                           12


<210> 64
<211> 12
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Bacterial contig motif


<220>
<221> modified_base
<222> (4)..(9)
<223> a, c, t, g, unknown or other

<400> 64
ccannnnnnc at                                                           12


