                         SEQUENCE LISTING

<110>  THE TRANSLATIONAL GENOMICS RESEARCH INSTITUTE
       ARIZONA BOARD OF REGENTS ON BEHALF OF NORTHERN ARIZONA 
       UNIVERSITY
       CENTERS FOR DISEASE CONTROL AND PREVENTION (CDC)
 
<120>  METHODS AND ASSAYS FOR SUBTYPING STAPHYLOCOCCUS AUREUS CLONAL 
       COMPLEX 8 STRAINS

<130>  91482.125PCT

<150>  US 62/490,460
<151>  2017-04-26

<160>  85    

<170>  PatentIn version 3.5

<210>  1
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  1
cgagtcagct agtggtccgt t                                                 21


<210>  2
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  2
atgcatagct cttgctaaag tgta                                              24


<210>  3
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  3
acctatacct gaacgtcaa                                                    19


<210>  4
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  4
ctatacctga gcgtcaaa                                                     18


<210>  5
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  5
tgcccataac acatttgaca cttt                                              24


<210>  6
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  6
ttcggccaca gctaaactcg                                                   20


<210>  7
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  7
gttcggctac agctaaactt gc                                                22


<210>  8
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  8
atcggacccg gtaacc                                                       16


<210>  9
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  9
taatcggacc tggtaacc                                                     18


<210>  10
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  10
cgccaaatga ctcgcattgt                                                   20


<210>  11
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  11
gcatgtgcct ttccgaarta aa                                                22


<210>  12
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  12
attactgtag cagggctg                                                     18


<210>  13
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  13
ctgtagcagg gttgc                                                        15


<210>  14
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  14
gatgacgtga taactgtacg tsgat                                             25


<210>  15
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  15
cgcgattgag ggtgaatatt gc                                                22


<210>  16
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  16
aagctaacaa aatcacctac tg                                                22


<210>  17
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  17
caaagctaac aaaattacct ac                                                22


<210>  18
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  18
tgcggatgtc ctatgtctga aag                                               23


<210>  19
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  19
gcgcaacagg gaagcaa                                                      17


<210>  20
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  20
tgcacttaca tatcatccat                                                   20


<210>  21
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  21
cacttacata ccatccatc                                                    19


<210>  22
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  22
accttatacr gaacatagca gacg                                              24


<210>  23
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  23
tcgatgcgct tctatcactt c                                                 21


<210>  24
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  24
tattagatga aggcctcaat a                                                 21


<210>  25
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  25
tttattagat gaaggcttca ata                                               23


<210>  26
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  26
cctgaagaag aagagcgttt aagaa                                             25


<210>  27
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  27
rcatcctacg atggccgaat c                                                 21


<210>  28
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  28
taaacgtcgt aaagtagaac aa                                                22


<210>  29
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  29
acgtaaacgt cgtaaagaag aac                                               23


<210>  30
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  30
catgaccgcc actataacca ga                                                22


<210>  31
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  31
atgcaacatt agcaggagga tg                                                22


<210>  32
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  32
tacgactgac ctgatgc                                                      17


<210>  33
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  33
cgactgactt gatgcc                                                       16


<210>  34
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  34
actgcaccta tacctgaacg tcaaaattta tttgg                                  35


<210>  35
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  35
acctatacct gaacgtcaaa attta                                             25


<210>  36
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  36
actgcaccta tacctgagcg tcaaaattta tttgg                                  35


<210>  37
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  37
acctatacct gagcgtcaaa attta                                             25


<210>  38
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  38
acttttgtaa tcggacccgg taaccgcttt ccaca                                  35


<210>  39
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  39
tgtaatcgga cccggtaacc gcttt                                             25


<210>  40
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  40
acttttgtaa tcggacctgg taaccgcttt ccaca                                  35


<210>  41
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  41
tgtaatcgga cctggtaacc gcttt                                             25


<210>  42
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  42
aaattactgt agcagggctg catgctggta aacat                                  35


<210>  43
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  43
actgtagcag ggctgcatgc tggta                                             25


<210>  44
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  44
aaattactgt agcagggttg catgctggta aacat                                  35


<210>  45
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  45
actgtagcag ggttgcatgc tggta                                             25


<210>  46
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  46
gatcaaagct aacaaaatca cctactgaaa tacct                                  35


<210>  47
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  47
agctaacaaa atcacctact gaaat                                             25


<210>  48
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  48
gatcaaagct aacaaaatta cctactgaaa tacct                                  35


<210>  49
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  49
agctaacaaa attacctact gaaat                                             25


<210>  50
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  50
gttaatgcac ttacatatca tccatcctct aacaa                                  35


<210>  51
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  51
tgcacttaca tatcatccat cctct                                             25


<210>  52
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  52
gttaatgcac ttacatacca tccatcctct aacaa                                  35


<210>  53
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  53
tgcacttaca taccatccat cctct                                             25


<210>  54
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  54
atttattaga tgaaggcctc aataaagcga atatc                                  35


<210>  55
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  55
ttagatgaag gcctcaataa agcga                                             25


<210>  56
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  56
atttattaga tgaaggcttc aataaagcga atatc                                  35


<210>  57
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  57
ttagatgaag gcttcaataa agcga                                             25


<210>  58
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  58
acgtaaacgt cgtaaagtag aacaagatag aaagc                                  35


<210>  59
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  59
aacgtcgtaa agtagaacaa gatag                                             25


<210>  60
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  60
acgtaaacgt cgtaaagaag aacaagatag aaagc                                  35


<210>  61
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  61
aacgtcgtaa agaagaacaa gatag                                             25


<210>  62
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  62
aaccagatac gactgacctg atgcctggat atgat                                  35


<210>  63
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  63
gatacgactg acctgatgcc tggat                                             25


<210>  64
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  64
aaccagatac gactgacttg atgcctggat atgat                                  35


<210>  65
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer/Probe

<400>  65
gatacgactg acttgatgcc tggat                                             25


<210>  66
<211>  88
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  66
cgagtcagct agtggtccgt ttaatttaac tgcacctata cctgaacgtc aaaatttatt       60

tggctacact ttagcaagag ctatgcat                                          88


<210>  67
<211>  79
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  67
tgcccataac acatttgaca cttttgtaat cggacccggt aaccgctttc cacatgcagc       60

gagtttagct gtggccgaa                                                    79


<210>  68
<211>  241
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  68
cgccaaatga ctcgcattgt gaaattactg tagcagggyt gcatgctggt aaacatgtga       60

tgtgtgaaaa accaatggct aaaacgacag cagaagctca aaaaatgata gatacagcta      120

aatcaacagg taaaaaatta acaataggtt atcaaaatcg tttccgagca gatagtcaat      180

ttttacatca agcagcgcaa cgtggcgact taggagacat ttacttcgga aaggcacatg      240

c                                                                      241


<210>  69
<211>  240
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  69
gatgacgtga taactgtacg tsgatcaaag ctaacaaaat yacctactga aatacctaaa       60

ctctttgtat cttcttctga tgtagttact tcatcaattc ttatttccat atgcttttga      120

tctctaggta tttcatgatt atttctatat acatgaacac ttgtttcatg cagacaaatt      180

gttcctgtat atatttgacc agcatcagtt ttaatttggc aatattcacc ctcaatcgcg      240


<210>  70
<211>  118
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  70
tgcggatgtc ctatgtctga aagtttacga ttattcttat ttctagttaa tgcacttaca       60

taycatccat cctctaacaa ctgttttaca actgcattac cttgcttccc tgttgcgc        118


<210>  71
<211>  106
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  71
accttatacg gaacatagca gacgttattt attagatgaa ggcctcaata aagcgaatat       60

ctttgtgaca ggatcaccga tgacagaagt gatagaagcg catcga                     106


<210>  72
<211>  243
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  72
cctgaagaag aagagcgttt aagaaacgta aacgtcgtaa agwagaacaa gatagaaagc       60

aacgacatga agaacgtaaa cgtcgtaaag wagaacaaga tagaaagctt aaagaaaaat      120

tagaaaagcg aaaagcacaa caataaagcc tgatggcagc atcattcaat gcgtgccacc      180

aggtttttat gttttgtcta gaaattaaat aaatcattaa atgattcggc catcgtagga      240

tgy                                                                    243


<210>  73
<211>  99
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  73
catgaccgcc actataacca gatacgactg acctgatgcc tggatatgat gtaaatggtt       60

taaccatgca ccagaaacat cctcctgcta atgttgcat                              99


<210>  74
<211>  88
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  74
cgagtcagct agtggtccgt ttaatttaac tgcacctata cctgagcgtc aaaatttatt       60

tggctacact ttagcaagag ctatgcat                                          88


<210>  75
<211>  79
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  75
tgcccataac acatttgaca cttttgtaat cggacctggt aaccgctttc cacatgcagc       60

gagtttagct gtggccgaa                                                    79


<210>  76
<211>  241
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  76
cgccaaatga ctcgcattgt gaaattactg tagcagggtt gcatgctggt aaacatgtga       60

tgtgtgaaaa accaatggct aaaacgacag cagaagctca aaaaatgata gatacagcta      120

aatcaacagg taaaaaatta acaataggtt atcaaaatcg tttccgagca gatagtcaat      180

ttttacatca agcagcgcaa cgtggcgact taggagacat ttacttcgga aaggcacatg      240

c                                                                      241


<210>  77
<211>  240
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  77
gatgacgtga taactgtacg tsgatcaaag ctaacaaaat tacctactga aatacctaaa       60

ctctttgtat cttcttctga tgtagttact tcatcaattc ttatttccat atgcttttga      120

tctctaggta tttcatgatt atttctatat acatgaacac ttgtttcatg cagacaaatt      180

gttcctgtat atatttgacc agcatcagtt ttaatttggc aatattcacc ctcaatcgcg      240


<210>  78
<211>  118
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  78
tgcggatgtc ctatgtctga aagtttacga ttattcttat ttctagttaa tgcacttaca       60

taccatccat cctctaacaa ctgttttaca actgcattac cttgcttccc tgttgcgc        118


<210>  79
<211>  106
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  79
accttatacg gaacatagca gacgttattt attagatgaa ggcttcaata aagcgaatat       60

ctttgtgaca ggatcaccga tgacagaagt gatagaagcg catcga                     106


<210>  80
<211>  243
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  80
cctgaagaag aagagcgttt aagaaacgta aacgtcgtaa agwagaacaa gatagaaagc       60

aacgacatga agaacgtaaa cgtcgtaaag aagaacaaga tagaaagctt aaagaaaaat      120

tagaaaagcg aaaagcacaa caataaagcc tgatggcagc atcattcaat gcgtgccacc      180

aggtttttat gttttgtcta gaaattaaat aaatcattaa atgattcggc catcgtagga      240

tgy                                                                    243


<210>  81
<211>  99
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  81
catgaccgcc actataacca gatacgactg acttgatgcc tggatatgat gtaaatggtt       60

taaccatgca ccagaaacat cctcctgcta atgttgcat                              99


<210>  82
<211>  241
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  82
cgccaaatga ctcgcattgt gaaattactg tagcagggct gcatgctggt aaacatgtga       60

tgtgtgaaaa accaatggct aaaacgacag cagaagctca aaaaatgata gatacagcta      120

aatcaacagg taaaaaatta acaataggtt atcaaaatcg tttccgagca gatagtcaat      180

ttttacatca agcagcgcaa cgtggcgact taggagacat ttacttcgga aaggcacatg      240

c                                                                      241


<210>  83
<211>  240
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  83
gatgacgtga taactgtacg tsgatcaaag ctaacaaaat cacctactga aatacctaaa       60

ctctttgtat cttcttctga tgtagttact tcatcaattc ttatttccat atgcttttga      120

tctctaggta tttcatgatt atttctatat acatgaacac ttgtttcatg cagacaaatt      180

gttcctgtat atatttgacc agcatcagtt ttaatttggc aatattcacc ctcaatcgcg      240


<210>  84
<211>  118
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  84
tgcggatgtc ctatgtctga aagtttacga ttattcttat ttctagttaa tgcacttaca       60

tatcatccat cctctaacaa ctgttttaca actgcattac cttgcttccc tgttgcgc        118


<210>  85
<211>  243
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Amplicon

<400>  85
cctgaagaag aagagcgttt aagaaacgta aacgtcgtaa agwagaacaa gatagaaagc       60

aacgacatga agaacgtaaa cgtcgtaaag tagaacaaga tagaaagctt aaagaaaaat      120

tagaaaagcg aaaagcacaa caataaagcc tgatggcagc atcattcaat gcgtgccacc      180

aggtttttat gttttgtcta gaaattaaat aaatcattaa atgattcggc catcgtagga      240

tgy                                                                    243


