                         SEQUENCE LISTING

<110>  Universitaet des Saarlandes
 
<120>  Assay system for BK-polyomavirus and uses thereof

<130>  SAR15588PCT

<150>  LU100065
<151>  2017-02-08

<160>  6     

<170>  PatentIn version 3.5

<210>  1
<211>  375
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BK polyomavirus strain WW NCCR

<400>  1
ttttgcaaaa attgcaaaag aatagggatt tccccaaata tttttgctag gcctcagaaa       60

aagcctccac acccttacta cttgagagaa agggtggagg cagaggcggc ctcggcctct      120

tatatattat aaaaaaaaag gccacaggga ggagctgcta acccatggaa tgtagccaaa      180

ccatgacctc aggaaggaaa gtgcatgact gggcagccag ccagtggcag ttaatagtga      240

aaccccgccc ctaaaattct caaataaaca caagaggaag tggaaactgg ccaaaggagt      300

ggaaagcagc cagacagaca tgttttgcga gcctaggaat cttggccttg tccccagtta      360

aactggacaa aggcc                                                       375


<210>  2
<211>  5141
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Archetypal BK polyomavirus strain WW genome

<400>  2
gcctcggcct cttatatatt ataaaaaaaa aggccacagg gaggagctgc taacccatgg       60

aatgtagcca aaccatgacc tcaggaagga aagtgcatga ctgggcagcc agccagtggc      120

agttaatagt gaaaccccgc ccctaaaatt ctcaaataaa cacaagagga agtggaaact      180

ggccaaagga gtggaaagca gccagacaga catgttttgc gagcctagga atcttggcct      240

tgtccccagt taaactggac aaaggccatg gttctgcgcc agctgtcacg acaagcttct      300

gtgaaagtta gtaaaacctg gactggaaca aaaaaaaggg ctcagaggat ttttattttt      360

attttagagc ttttgctgga attttgtaga ggtgaagaca gtgtagacgg gaaaaacaaa      420

agtaccactg ctttacctgc tgtaaaagac tctgtaaaag actcctaggt aagtaatccc      480

tttttttttg tatttccagg ttgatgggtg ctgctctagc acttttgggg gacctagttg      540

ccagtgtatc tgaggctgct gctgccacag gattttcagt ggctgaaatt gctgctgggg      600

aggctgctgc tgctatagaa gttcaaattg catcccttgc tactgtagag ggcataacaa      660

gtacctcaga ggctatagct gctataggcc taactcctca aacatatgct gtaattgctg      720

gtgctcctgg ggctattgct gggtttgctg ctttaattca aactgttact ggtattagtt      780

ccttggctca agtagggtat aggtttttta gtgattggga tcacaaagtt tccactgtag      840

gcctctatca gcaatcaggc atggctttgg aattgtttaa cccagatgag tactatgata      900

ttttgtttcc tggtgtaaat acttttgtaa ataatattca ataccttgat cctaggcatt      960

ggggtccttc cttgtttgct actatttccc aggctttgtg gcatgttatt agggatgata     1020

tacctgctat aacctcacaa gaattgcaaa gaagaacaga aagatttttt agagactcct     1080

tggctagatt tttggaggaa actacctgga caattgtaaa tgcccctata aacttttata     1140

attatattca agaatattat tctgatcttt cccctattag gccctcaatg gttagacaag     1200

tggctgaaag ggaaggtacc cgtgtacatt ttggccatac ttatagtata gatgatgctg     1260

acagtataga agaagttaca caaagaatgg acttaagaaa tcaacaaact gtacattcag     1320

gagagtttat agaaaaaact attgccccag gaggtgctaa tcaaagaact gctcctcaat     1380

ggatgttgcc tttacttcta ggcctgtacg ggactgtaac acctgctctt gaagcatatg     1440

aagatggccc caaccaaaag aaaaggagag tgtccagggg cagctcccaa aaagccaaag     1500

gaacccgtgc aagtgccaaa actactaata aaaggaggag tagaagttct agaagttaaa     1560

actggggtag atgctataac agaggtagaa tgcttcctaa acccagaaat gggggatcca     1620

gatgaaaacc ttaggggctt tagtctaaag ctaagtgcta aaaatgactt tagcagtgat     1680

agcccagaaa gaaaaatgct tccctgttac agcacagcaa gaattcccct ccccaattta     1740

aatgaggacc taacctgtgg aaatctactg atgtgggagg ctgtaactgt acaaacagag     1800

gtcattggaa taactagcat gcttaacctt catgcagggt cacaaaaagt gcatgagcat     1860

ggtggaggta aacctattca aggcagtaat ttccacttct ttgctgttgg tggagacccc     1920

ttggaaatgc agggagtgct aatgaattac aggaccaagt acccagatgg tactataacc     1980

ccaaaaaacc caacagccca gtcccaggta atgaatactg accataaggc ctatttggac     2040

aaaaacaatg cttatccagt tgagtgctgg gttcctgatc ctagtagaaa tgaaaatact     2100

aggtattttg ggactttcac aggaggggaa aatgttcccc cagtacttca tgtgaccaac     2160

acagctacca cagtgttgct agatgaacag ggtgtggggc ctctttgtaa agctgatagc     2220

ctgtatgttt cagctgctga tatttgtggc ctgtttacta acagctctgg aacacaacag     2280

tggagaggcc ttgcaagata ttttaagatt cgcctgagaa aaagatctgt aaaaaatcct     2340

tacccaattt cctttttgct aagtgacctt ataaacagga gaacccagag agtggatggg     2400

cagcctatgt atggtatgga atcccaggta gaagaggtta gggtgtttga tggcacagaa     2460

agacttccag gggacccaga tatgataaga tatattgata aacaaggaca attgcaaacc     2520

aaaatgcttt aaacaggtgc ttttattgta catatacatt taataaatgc tgcttttgta     2580

taagccactt ttaagcttgt gttattttgg gggtggtgtt ttaggccttt taaaacattg     2640

aaagccttta cacaaatgca actcttgact atgggggtct aacctttggg aatcttcagc     2700

aggggctgaa gtatctgaga cttgggaaga gcattgtgat tgggattcag tgcttgatcc     2760

atgtccagag tcttcagttt ctgaatcttc ttctcttgtg atatcaagaa tacatttccc     2820

catgcatata ttatatttca tccttgaaaa agtatacata cttatctcag aatccagcct     2880

ttccttccat tcaacaattc tagattgtat atctgttgca aaatcagcta caggcctaaa     2940

ccaaattagc agtagcaaca aggtcattcc actttgtaaa attctttttt caagtaagaa     3000

ctctgagttt tgtaaggatt ttcttaaata tattttgggt ctaaaatcta tctgtcttac     3060

aaatctagcc tgcagggttt taggaacagg atactcattc attgtaacca ggcctggtgg     3120

aaatatttgg gttcttttgt ttaaatgttt cttttctaaa ttaaccttaa cacttccatc     3180

taaataatct ctcaaactgt ctaaattgtt tattccatgt cctgaaggca aatcctttga     3240

ttcagcccct gttcctttta catcttcaaa aacaaccatg tactgatcta tagctacacc     3300

tagttcaaag gttagccttt ccatgggtag gtttacattt aaggctttac ctccacacaa     3360

atctaataac cctgcagcta gtgttgtttt tccactatca atgggacctt taaataacca     3420

gtatcttctt ttaggtacat taaaaacaat acagtgcaaa aaatcaaata taacagaatc     3480

cattttaggt agcaaacagt gcagccaagc aacacctgcc atatattgtt ccagtacagc     3540

atttccatga gctccaaata ttaaatccat tttatctaat atatgattaa atctttctgt     3600

tagcatttct tctctggtca tatgaagggt atctactctt tttttagcta aaactgtatc     3660

tactgcttgc tgacaaatac ttttttgatt tttactttct gcaaaaatag tagcatttgc     3720

aaaatgcttt tcatgatact taaagtgata aggttggtct tttttctgac actttttaca     3780

ctcttctaca ttgtattgaa attctaaata catacccaat aataaaaaca catcctcaca     3840

ctttgtctct actgcatact cagtaattaa tttccaagac acctgctttg tttcttcagg     3900

ctcttctggg ttaaaatcat gctcctttaa gcccccttga atgctttctt ctattgtatg     3960

gtatggatct ctagttaagg cactatatag taagtattcc ttattaacac ccttacaaat     4020

taaaaaacta aaggtacaca gcttttgaca gaaattatta attgcagaaa ctctatgtct     4080

atgtggagtt aaaaagaata taatattatg cccagcacac atgtgtctac taataaaagt     4140

tacagaatat ttttccataa gttttttata cagaatttga gctttttctt tagtagtata     4200

cacagcaaag caggcaaggg ttctattact aaatacagct tgactaagaa actggtgtag     4260

atcagaagga aagtctttag ggtcttctac ctttctcttt ttcttgggtg gtgtggagtg     4320

ttgagaatct gctgttgctt cttcatcact ggcaaacata tcttcatggc aaaataaatc     4380

ttcatcccat ttttcattaa aggagctcca ccaggactcc cactcttctg ttccataggt     4440

tggcacctat aaaaaaaata attacttagg gcctttaaat attttcttat ttatctaaat     4500

ataagttagt taccttaaag ctttagatct ctgaagggag tttctccaat tatttggacc     4560

caccattgca gagtttcttc agttaggtct aagccaaacc actgtgtgaa gcagtcaatg     4620

cagtagcaat ctatccaaac caagggctct tttcttaaaa attttctatt taaatgcctt     4680

aatctaagct gacatagcat gcaagggcag tgcacagaag gctttttgga acaaataggc     4740

caatccttgc agtacagggt atctgggcaa agaggaaaat cagcacaaac ctctgagcta     4800

ctccaggttc caaaatcagg ctgatgagct acctttacat cctgctccat ttttttatat     4860

aaagtattca ttctcttcat tttatcctcg tcgccccctt tgtcagggtg aaattcctta     4920

cacttcctta aataggcttt tctcattaag ggaaggtttc cccaggcagc tctttcaagg     4980

cctaaaaggt ccatgagctc catggattct tccctgttaa gcactttatc catttttgca     5040

aaaattgcaa aagaataggg atttccccaa atatttttgc taggcctcag aaaaagcctc     5100

cacaccctta ctacttgaga gaaagggtgg aggcagaggc g                         5141


<210>  3
<211>  375
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BK polyomavirus strain WWM12 NCCR

<400>  3
ttttgcaaaa attgcaaaag aatagggatt tccccaaata tttttgctag gcctcagaaa       60

aagcctccac acccttacta cttgagagaa agggtggagg ccgaggcggc ctcggcctct      120

tatatattat aaaaaaaaag gccacaggga ggagctgcta acccatggaa tgtagccaaa      180

ccatgacctc aggaaggaaa gtgcatgact gggcagccag ccagtggcag ttaatagtga      240

aaccccgccc ctaaaattct caaataaaca caagaggaag tggaaactgg ccaaaggagt      300

ggaaagcagc cagacagaca tgttttgcga gcctaggaat cttggccttg tccccagtta      360

aactggacaa aggcc                                                       375


<210>  4
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  VP2-F primer

<400>  4
ccccaggagg tgctaatc                                                     18


<210>  5
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  VP2-B primer

<400>  5
cagtcccgta caggcctaga a                                                 21


<210>  6
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NCCR probe

<400>  6
aagaactgct cctcaatgga tgttgcctt                                         29


