                         SEQUENCE LISTING

<110>  THE UNIVERSITY OF CHICAGO
 
<120>  METHODS FOR DETECTING CYTOSINE MODIFICATIONS

<130>  ARCD.P0622WO

<150>  62/442,230
<151>  2017-01-04

<160>  6     

<170>  PatentIn version 3.5

<210>  1
<211>  375
<212>  PRT
<213>  Homo sapiens

<400>  1

Ser His His His His His His Ser Ser Gly Val Asp Leu Gly Thr Glu 
1               5                   10                  15      


Asn Leu Tyr Phe Gln Ser Asn Ala Met Lys Ile Ala Ile Ile Asn Met 
            20                  25                  30          


Gly Asn Asn Val Ile Asn Phe Lys Thr Val Pro Ser Ser Glu Thr Ile 
        35                  40                  45              


Tyr Leu Phe Lys Val Ile Ser Glu Met Gly Leu Asn Val Asp Ile Ile 
    50                  55                  60                  


Ser Leu Lys Asn Gly Val Tyr Thr Lys Ser Phe Asp Glu Val Asp Val 
65                  70                  75                  80  


Asn Asp Tyr Asp Arg Leu Ile Val Val Asn Ser Ser Ile Asn Phe Phe 
                85                  90                  95      


Gly Gly Lys Pro Asn Leu Ala Ile Leu Ser Ala Gln Lys Phe Met Ala 
            100                 105                 110         


Lys Tyr Lys Ser Lys Ile Tyr Tyr Leu Phe Thr Asp Ile Arg Leu Pro 
        115                 120                 125             


Phe Ser Gln Ser Trp Pro Asn Val Lys Asn Arg Pro Trp Ala Tyr Leu 
    130                 135                 140                 


Tyr Thr Glu Glu Glu Leu Leu Ile Lys Ser Pro Ile Lys Val Ile Ser 
145                 150                 155                 160 


Gln Gly Ile Asn Leu Asp Ile Ala Lys Ala Ala His Lys Lys Val Asp 
                165                 170                 175     


Asn Val Ile Glu Phe Glu Tyr Phe Pro Ile Glu Gln Tyr Lys Ile His 
            180                 185                 190         


Met Asn Asp Phe Gln Leu Ser Lys Pro Thr Lys Lys Thr Leu Asp Val 
        195                 200                 205             


Ile Tyr Gly Gly Ser Phe Arg Ser Gly Gln Arg Glu Ser Lys Met Val 
    210                 215                 220                 


Glu Phe Leu Phe Asp Thr Gly Leu Asn Ile Glu Phe Phe Gly Asn Ala 
225                 230                 235                 240 


Arg Glu Lys Gln Phe Lys Asn Pro Lys Tyr Pro Trp Thr Lys Ala Pro 
                245                 250                 255     


Val Phe Thr Gly Lys Ile Pro Met Asn Met Val Ser Glu Lys Asn Ser 
            260                 265                 270         


Gln Ala Ile Ala Ala Leu Ile Ile Gly Asp Lys Asn Tyr Asn Asp Asn 
        275                 280                 285             


Phe Ile Thr Leu Arg Val Trp Glu Thr Met Ala Ser Asp Ala Val Met 
    290                 295                 300                 


Leu Ile Asp Glu Glu Phe Asp Thr Lys His Arg Ile Ile Asn Asp Ala 
305                 310                 315                 320 


Arg Phe Tyr Val Asn Asn Arg Ala Glu Leu Ile Asp Arg Val Asn Glu 
                325                 330                 335     


Leu Lys His Ser Asp Val Leu Arg Lys Glu Met Leu Ser Ile Gln His 
            340                 345                 350         


Asp Ile Leu Asn Lys Thr Arg Ala Lys Lys Ala Glu Trp Gln Asp Ala 
        355                 360                 365             


Phe Lys Lys Ala Ile Asp Leu 
    370                 375 


<210>  2
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Adapter

<400>  2
gtctcgtggg ctcggagatg tgtataagag acag                                   34


<210>  3
<211>  13
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Primer

<400>  3
cgtcggcagc gtc                                                          13


<210>  4
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Probe


<220>
<221>  misc_feature
<222>  (8)..(15)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (45)..(47)
<223>  U is d configuration

<400>  4
cgagtcannn nnnnnctgtc tcttatacac atctgacgct gccguuutcg tcggcagcgt       60

c                                                                       61


<210>  5
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Adapter


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' biotin tagged

<400>  5
gtctcgtggg ctcggagatg tgtataagag acag                                   34


<210>  6
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Adapter


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' DBCO tagged

<220>
<221>  misc_feature
<222>  (8)..(15)
<223>  n is a, c, g, t or u

<220>
<221>  misc_feature
<222>  (45)..(47)
<223>  U is d configuration

<400>  6
cgagtcannn nnnnnctgtc tcttatacac atctgacgct gccguuutcg tcggcagcgt       60

c                                                                       61


