                         SEQUENCE LISTING

<110>  The BROAD Institute, Inc
       Massachusetts Institute of Technology
       President and Fellows of Harvard College
       Baniecki, Mary Lynn
       Metsky, Hayden
       Sabeti, Pardis
 
<120>  Nucleic Acid Amplification Assays for Detection of Pathogens

<130>  BROD-0741WP

<150>  US 62/380,352
<151>  2016-08-26

<150>  US 62/459,578
<151>  2017-02-15

<150>  US 62/507,619
<151>  2017-05-17

<160>  47    

<170>  PatentIn version 3.5

<210>  1
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic primer

<400>  1
tcctttaacg aggatccatt gg                                                22


<210>  2
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic primer

<400>  2
cgagcttttt aactgcagca act                                               23


<210>  3
<211>  20
<212>  DNA
<213>  Zika virus

<400>  3
ggcttgaagc aagaatgctc                                                   20


<210>  4
<211>  20
<212>  DNA
<213>  Zika virus

<400>  4
ccctcaatgg ctgctacttt                                                   20


<210>  5
<211>  24
<212>  DNA
<213>  Zika virus

<400>  5
agatggcctc atagcctcgc tcta                                              24


<210>  6
<211>  100
<212>  DNA
<213>  Zika virus

<400>  6
ggcttgaagc aagaatgctc cttgacaata tttacctcca agatggcctc atagcctcgc       60

tctatcgacc tgaggccgac aaagtagcag ccattgaggg                            100


<210>  7
<211>  21
<212>  DNA
<213>  Zika virus

<400>  7
attgaggaat ggtgctgtag g                                                 21


<210>  8
<211>  21
<212>  DNA
<213>  Zika virus

<400>  8
gttctttcct gggccttatc t                                                 21


<210>  9
<211>  24
<212>  DNA
<213>  Zika virus

<400>  9
aagacggctg ctggtatgga atgg                                              24


<210>  10
<211>  100
<212>  DNA
<213>  Zika virus

<400>  10
attgaggaat ggtgctgtag ggaatgcaca atgcccccac tatcgtttcg agcaaaagac       60

ggctgctggt atggaatgga gataaggccc aggaaagaac                            100


<210>  11
<211>  20
<212>  DNA
<213>  Zika virus

<400>  11
tcatgaagaa cccrtgytgg                                                   20


<210>  12
<211>  20
<212>  DNA
<213>  Zika virus

<400>  12
ctcagccgcc atrtgraaga                                                   20


<210>  13
<211>  21
<212>  DNA
<213>  Zika virus

<400>  13
tgcaaagcta tgggtggaac a                                                 21


<210>  14
<211>  88
<212>  DNA
<213>  Zika virus

<400>  14
tcatgaagaa cccgtgttgg tgcaaagcta tgggtggaac atagtccgtc ttaagagtgg       60

ggtggacgtc tttcatatgg cggctgag                                          88


<210>  15
<211>  20
<212>  DNA
<213>  Zika virus

<400>  15
agyygaytgg gthccaactg                                                   20


<210>  16
<211>  22
<212>  DNA
<213>  Zika virus

<400>  16
ytcctcaatc cacactctrt tc                                                22


<210>  17
<211>  24
<212>  DNA
<213>  Zika virus

<400>  17
acctggtcaa tccatggaaa ggga                                              24


<210>  18
<211>  109
<212>  DNA
<213>  Zika virus

<400>  18
agttgactgg gttccaactg ggagaactac ctggtcaatc catggaaagg gagaatggat       60

gaccactgaa gacatgcttg tggtgtggaa cagagtgtgg attgaggag                  109


<210>  19
<211>  21
<212>  DNA
<213>  Zika virus

<400>  19
ccayttcaac aarctsyayc t                                                 21


<210>  20
<211>  19
<212>  DNA
<213>  Zika virus

<400>  20
tttgcwarca rgcagtctc                                                    19


<210>  21
<211>  22
<212>  DNA
<213>  Zika virus

<400>  21
tgccgccacc aagatgaact ga                                                22


<210>  22
<211>  135
<212>  DNA
<213>  Zika virus

<400>  22
ccacttcaac aagctccatc tcaaggacgg gaggtccatt gtggttccct gccgccacca       60

agatgaactg attggccggg cccgcgtctc tccaggggcg ggatggagca tccgggagac      120

tgcttgccta gcaaa                                                       135


<210>  23
<211>  17
<212>  DNA
<213>  Zika virus

<400>  23
tsyagggart gcacaat                                                      17


<210>  24
<211>  24
<212>  DNA
<213>  Zika virus

<400>  24
actaagttrc tytctggttc ytty                                              24


<210>  25
<211>  24
<212>  DNA
<213>  Zika virus

<400>  25
tggtatggaa tggagataag gccc                                              24


<210>  26
<211>  102
<212>  DNA
<213>  Zika virus

<400>  26
agggagtgca caatgccccc actgtcgttc cgggctaaag atggctgttg gtatggaatg       60

gagataaggc ccaggaaaga accagaaagc aacttagtaa gg                         102


<210>  27
<211>  20
<212>  DNA
<213>  Zika virus

<400>  27
agagaccctg ggagagaaat                                                   20


<210>  28
<211>  19
<212>  DNA
<213>  Zika virus

<400>  28
ctcggtgatg cctgacttt                                                    19


<210>  29
<211>  24
<212>  DNA
<213>  Zika virus

<400>  29
agatgtcggc cctggagttc tact                                              24


<210>  30
<211>  88
<212>  DNA
<213>  Zika virus

<400>  30
agagaccctg ggagagaaat ggaaggcccg cttgaaccag atgtcggccc tggagttcta       60

ctcctacaaa aagtcaggca tcaccgag                                          88


<210>  31
<211>  19
<212>  DNA
<213>  Chikungunya virus

<400>  31
tttgcaagct ccagatcca                                                    19


<210>  32
<211>  23
<212>  DNA
<213>  Chikungunya virus

<400>  32
gtagctgtag tgcgtaccta ttt                                               23


<210>  33
<211>  20
<212>  DNA
<213>  Chikungunya virus

<400>  33
gagaagctca gaggacccgt                                                   20


<210>  34
<211>  89
<212>  DNA
<213>  Chikungunya virus

<400>  34
tttgcaagct ccagatccaa cttcgagaag ctcagaggac ccgtcataac tttgtacggc       60

ggtcctaaat aggtacgcac tacagctac                                         89


<210>  35
<211>  21
<212>  DNA
<213>  Chikungunya virus

<400>  35
cgttctcgca tctagccata a                                                 21


<210>  36
<211>  23
<212>  DNA
<213>  Chikungunya virus

<400>  36
tgatcccgac tcaaccatcc tgg                                               23


<210>  37
<211>  22
<212>  DNA
<213>  Chikungunya virus

<400>  37
gtacttcctg tccgacatca tc                                                22


<210>  38
<211>  110
<212>  DNA
<213>  Chikungunya virus

<400>  38
cgttctcgca tctagccata aaactaatag agcaggaaat tgatcccgac tcaaccatcc       60

tggatatagg tagtgcgcca gcaaggagga tgatgtcgga caggaagtac                 110


<210>  39
<211>  18
<212>  DNA
<213>  Chikungunya virus

<400>  39
cccgactcaa ccatcctg                                                     18


<210>  40
<211>  18
<212>  DNA
<213>  Chikungunya virus

<400>  40
gcagacgcag tggtactt                                                     18


<210>  41
<211>  22
<212>  DNA
<213>  Chikungunya virus

<400>  41
ccagcaagga ggatgatgtc gg                                                22


<210>  42
<211>  90
<212>  DNA
<213>  Chikungunya virus

<400>  42
ccccgactca accatcctgg atatcggcag tgcgccagca aggaggatga tgtcggacag       60

gaagtaccag gaagtaccac tgcgtctgcc                                        90


<210>  43
<211>  19
<212>  DNA
<213>  Dengue virus

<400>  43
aaccwacgra araagrcgv                                                    19


<210>  44
<211>  20
<212>  DNA
<213>  Dengue virus

<400>  44
grgaawctct tygyyarctg                                                   20


<210>  45
<211>  17
<212>  DNA
<213>  Dengue virus

<400>  45
tcaatatgct gaaacgc                                                      17


<210>  46
<211>  95
<212>  DNA
<213>  Dengue virus

<400>  46
aacctacgaa aaaagacggc tcgaccgtct ttcaatatgc tgaaacgcgc gagaaaccgc       60

gtgtcaactg tttcacagtt ggcgaagaga ttctc                                  95


<210>  47
<211>  25
<212>  DNA
<213>  Dengue virus

<400>  47
cgtctttcaa tatgctgaaa cgcgc                                             25


