                         SEQUENCE LISTING

<110>  LUDWIG INSTITUTE FOR CANCER RESEARCH LTD
 
<120>  METHODS OF SMALL-RNA TRANSCRIPTOME SEQUENCING AND APPLICATIONS 
       THEREOF

<130>   084276.00207

<140>  PCT/US17/37620
<141>  2017-06-15

<150>  62/351,765
<151>  2016-06-17

<160>  83    

<170>  PatentIn version 3.5

<210>  1
<211>  76
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  1
atcggcaagc gacgctcaga caggcgtagc cccgggagga acccggggcc gcaagtgcgt       60

tcgaagtgtc gatgat                                                       76


<210>  2
<211>  29
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  2
ggcgaagccc aaccgacgct cagacaggc                                         29


<210>  3
<211>  48
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  3
ggcgaagcca agcgacgctc agacaggcgt agccccggga ggaacccg                    48


<210>  4
<211>  33
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  4
ggcgaagcca agcgacgctc agacaggcgt agc                                    33


<210>  5
<211>  21
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  5
aaaagcgacg ctcagacagg c                                                 21


<210>  6
<211>  94
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  6
ggcgaagcca agcgacgctc agacaggcgt agccccggga ggaacccggg gccgcaagtg       60

cgttcgaagt gtcgatgatc aatgtggcga agcc                                   94


<210>  7
<211>  98
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  7
ggcgaagccg tcctgcaatt cacattaatt ctcgcagcta gctgcgttct tcatcgacgc       60

acgagccgag tgatccaccg ctaagagtcg gcgaagcc                               98


<210>  8
<211>  76
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  8
gcatcggcaa gcgacgctca gacaggcgta gccccgggag gaacccgggg ccgcaagtgc       60

gttcgaagtg tcgatg                                                       76


<210>  9
<211>  170
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  9
atcggcaagc gacgctcaga caggcgtagc cccgggagga acccggggcc gcaagtgcgt       60

tcgaagtgtc gatgatcaat gtgtcctgca attcacatta attctcgcag ctagctgcgt      120

tcttcatcga cgcacgagcc gagtgatcca ccgctaagag tcgtacgagg                 170


<210>  10
<211>  31
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  10
atcggcaagc gacgctcaga caggcgtagc c                                      31


<210>  11
<211>  31
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  11
cgagtgatcc accgctaaga gtcgtacgag g                                      31


<210>  12
<211>  22
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  12
ccttggcacc cgagaattcc ra                                                22


<210>  13
<211>  31
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  13
acccgagaat tccaattgat ggtgcctaca g                                      31


<210>  14
<211>  20
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  14
ccttggcacc cgagaattcc                                                   20


<210>  15
<211>  20
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  15
ccttggcacc cgagaattcc                                                   20


<210>  16
<211>  22
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  16
gccttggcac ccgagaattc ca                                                22


<210>  17
<211>  72
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  17
rgrururcra rgrargruru rcrurarcra rgrurcrcrg rarcrgraru rcrhrhrhrh       60

rhrhrhrhrc ra                                                           72


<210>  18
<211>  34
<212>  RNA
<213>  artificial

<220>
<223>  synthetic


<220>
<221>  misc_feature
<222>  (27)..(32)
<223>  n is a, c, g, or u

<400>  18
guucagaguu cuacaguccg acgaucnnnn nnca                                   34


<210>  19
<211>  36
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  19
guucagaguu cuacaguccg acgaucvvvv vvvvca                                 36


<210>  20
<211>  38
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  20
guucagaguu cuacaguccg acgauchhhh hhhhhhca                               38


<210>  21
<211>  39
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  21
gttcagagtt ctacagtccg acgatchhhr hrhrhrcra                              39


<210>  22
<211>  41
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  22
gttcagagtt ctacagtccg acgatchhhh hrhrhrhrcr a                           41


<210>  23
<211>  37
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  23
guucagaguu cuacaguccg acgaucrddd dddgaga                                37


<210>  24
<211>  36
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  24
guucagaguu cuacaguccg acgaucvvvv vvvvca                                 36


<210>  25
<211>  34
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  25
guucagaguu cuacaguccg acgaucvvvv vvvv                                   34


<210>  26
<211>  33
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  26
ccuuggcacc cgaguucuac aguccgacga uch                                    33


<210>  27
<211>  44
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  27
ccuuggcacc cgaguucuac aguccgacga uchhhhhhhh hhca                        44


<210>  28
<211>  35
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  28
guucagaguu cuacaguccg acgauchhha hhhca                                  35


<210>  29
<211>  35
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  29
guucagaguu cuacaguccg acgauchhhu hhhca                                  35


<210>  30
<211>  34
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  30
guucagaguu cuacaguccg acgauchhhh hhca                                   34


<210>  31
<211>  35
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  31
guucagaguu cuacaguccg acgaucvvva vvvca                                  35


<210>  32
<211>  35
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  32
guucagaguu cuacaguccg acgaucvvvc vvvca                                  35


<210>  33
<211>  34
<212>  RNA
<213>  artificial

<220>
<223>  synthetic

<400>  33
guucagaguu cuacaguccg acgaucvvvv vvca                                   34


<210>  34
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  34
caagcagaag acggcatacg agatcgtgat gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  35
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  35
caagcagaag acggcatacg agatacatcg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  36
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  36
caagcagaag acggcatacg agatgcctaa gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  37
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  37
caagcagaag acggcatacg agattggtca gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  38
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  38
caagcagaag acggcatacg agatcactgt gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  39
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  39
caagcagaag acggcatacg agatattggc gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  40
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  40
caagcagaag acggcatacg agatgatctg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  41
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  41
caagcagaag acggcatacg agattcaagt gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  42
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  42
caagcagaag acggcatacg agatctgatc gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  43
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  43
caagcagaag acggcatacg agataagcta gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  44
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  44
caagcagaag acggcatacg agatgtagcc gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  45
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  45
caagcagaag acggcatacg agattacaag gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  46
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  46
caagcagaag acggcatacg agatttgact gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  47
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  47
caagcagaag acggcatacg agatggaact gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  48
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  48
caagcagaag acggcatacg agattgacat gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  49
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  49
caagcagaag acggcatacg agatggacgg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  50
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  50
caagcagaag acggcatacg agatctctac gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  51
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  51
caagcagaag acggcatacg agatgcggac gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  52
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  52
caagcagaag acggcatacg agattttcac gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  53
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  53
caagcagaag acggcatacg agatggccac gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  54
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  54
caagcagaag acggcatacg agatcgaaac gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  55
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  55
caagcagaag acggcatacg agatcgtacg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  56
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  56
caagcagaag acggcatacg agatccactc gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  57
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  57
caagcagaag acggcatacg agatgctacc gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  58
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  58
caagcagaag acggcatacg agatatcagt gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  59
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  59
caagcagaag acggcatacg agatgctcat gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  60
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  60
caagcagaag acggcatacg agataggaat gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  61
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  61
caagcagaag acggcatacg agatcttttg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  62
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  62
caagcagaag acggcatacg agattagttg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  63
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  63
caagcagaag acggcatacg agatccggtg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  64
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  64
caagcagaag acggcatacg agatatcgtg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  65
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  65
caagcagaag acggcatacg agattgagtg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  66
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  66
caagcagaag acggcatacg agatcgcctg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  67
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  67
caagcagaag acggcatacg agatgccatg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  68
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  68
caagcagaag acggcatacg agataaaatg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  69
<211>  47
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  69
caagcagaag acggcatacg agattgttgg gtgactggag ttccttg                     47


<210>  70
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  70
caagcagaag acggcatacg agatattccg gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  71
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  71
caagcagaag acggcatacg agatagctag gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  72
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  72
caagcagaag acggcatacg agatgtatag gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  73
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  73
caagcagaag acggcatacg agattctgag gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  74
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  74
caagcagaag acggcatacg agatgtcgtc gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  75
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  75
caagcagaag acggcatacg agatcgatta gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  76
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  76
caagcagaag acggcatacg agatgctgta gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  77
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  77
caagcagaag acggcatacg agatattata gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  78
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  78
caagcagaag acggcatacg agatgaatga gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  79
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  79
caagcagaag acggcatacg agattcggga gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  80
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  80
caagcagaag acggcatacg agatcttcga gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  81
<211>  63
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  81
caagcagaag acggcatacg agattgccga gtgactggag ttccttggca cccgagaatt       60

cca                                                                     63


<210>  82
<211>  21
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  82
tggaattctc gggtgccaag g                                                 21


<210>  83
<211>  50
<212>  DNA
<213>  artificial

<220>
<223>  synthetic

<400>  83
aatgatacgg cgaccaccga gatctacacg ttcagagttc tacagtccga                  50


