                         SEQUENCE LISTING

<110>  University of the Witwatersrand, Johannesburg
 
<120>  GENETICALLY MODIFIED STRAINS OF MYCOBACTERIUM SMEGMATIS

<130>  PA165143/PCT

<150>  2016/02181
<151>  2016-03-31

<160>  14    

<170>  PatentIn version 3.5

<210>  1
<211>  80
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  1
gcaccagcca gctgagccaa ttcatggacc agaacaaccc gctgtcgggg ttgacccaca       60

agcgccgact gtcggcgctg                                                   80


<210>  2
<211>  80
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  2
gcaccagcca gctgagccta ttcatggacc agaacaaccc gctgtcgggg ttgacccaca       60

agcgccgact gtcggcgctg                                                   80


<210>  3
<211>  80
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  3
gcaccagcca gctgagccaa ttcatggtcc agaacaaccc gctgtcgggg ttgacccaca       60

agcgccgact gtcggcgctg                                                   80


<210>  4
<211>  80
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  4
gcaccagcca gctgagccaa ttcatggacc agaacaaccc gctgtcgggg ttgacctaca       60

agcgccgact gtcggcgctg                                                   80


<210>  5
<211>  80
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  5
gcaccagcca gctgagccaa ttcatggacc agaacaaccc gctgtcgggg ttgacccaca       60

agcgccgact gttggcgctg                                                   80


<210>  6
<211>  80
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  6
gcaccagcca gctgagccaa ttcatggacc agaacaaccc gctgtcgggg ttgacccaca       60

agcgccgact gtcggcgccg                                                   80


<210>  7
<211>  80
<212>  DNA
<213>  Mycobacterium smegmatis

<400>  7
gcaccagcca gctgtcgcag ttcatggacc agaacaaccc gctgtcgggt ctgacccaca       60

agcgtcgtct ttcggcgctg                                                   80


<210>  8
<211>  962
<212>  DNA
<213>  artificial sequence

<220>
<223>  S. aureus-derived orfX and SCCmec included in M. smegmatis

<400>  8
atgaaaatca ccattttagc tgtagggaaa ctaaaagaga aatattggaa gcaagccata       60

gcagaatatg aaaaacgttt aggcccatac accaagatag acatcataga agttacagac      120

gaaaaagcac cagaaaatat gagcgacaaa gaaatcgagc aagtaaaaga aaaagaaggc      180

caacgaatac tagccaaaat caaaccacaa tccacagtca ttacattaga aatacaagga      240

aagatgctat cttccgaagg attggcccaa gaattgaacc aacgcatgac ccaagggcaa      300

agcgactttg tattcgtcat tggcggatca aacggcctgc acaaggacgt cttacaacgt      360

agtaactacg cactatcatt cagcaaaatg acatttccac atcaaatgat gcgggttgtg      420

ttaattgaac aagtgtacag agcatttaag attatgcgtg gagaagcata tcataaatga      480

tgcggttttt tcagccgctt cataaaggga ttttgaatgt atcagaacat atgaggttta      540

tgtgaattgc tgttatgttt ttaagaagct tatcataagt aatgaggttc atgatttttg      600

acatagttag cctccgcagt ctttcatttc aagtaaataa tagcgaaata ttctttatac      660

tgaatactta tagtgaagca aagttctagc tttgagaaaa ttctttctgc aactaaatat      720

agtaaattac ggtaaaatat aaataagtac atattgaaga aaatgagaca taatatattt      780

tataatagga gggaatttca aatgatagac aactttatgc aggtccttaa attaattaaa      840

gagaaacgta ccaataatgt agttaaaaaa tctgattggg ataaaggtga tctatataaa      900

actttagtcc atgataagtt acccaagcag ttaaaagtgc atataaaaga agataaatat      960

ga                                                                     962


<210>  9
<211>  562
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  9
gctgaccgaa gaagacgtcg tggccaccat cgaatatctg gtccgcttgc acgagggtca       60

gaccacgatg accgttccgg gcggcgtcga ggtgccggtg gaaaccgacg acatcgacca      120

cttcggcaac cgccgcctgc gtacggtcgg cgagctgatc caaaaccaga tccgggtcgg      180

catgtcgcgg atggagcggg tggtccggga gcggatgacc acccaggacg tggaggcgat      240

cacaccgcag acgttgatca acatccggcc ggtggtcgcc gcgatcaagg agttcttcgg      300

caccagccag ctgagccaat tcatggacca gaacaacccg ctgtcggggt tgacccacaa      360

gcgccgactg tcggcgctgg ggcccggcgg tctgtcacgt gagcgtgccg ggctggaggt      420

ccgcgacgtg cacccgtcgc actacggccg gatgtgcccg atcgaaaccc ctgaggggcc      480

caacatcggt ctgatcggct cgctgtcggt gtacgcgcgg gtcaacccgt tcgggttcat      540

cgaaacgccg taccgcaagg tg                                               562


<210>  10
<211>  562
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  10
gctgaccgaa gaagacgtcg tggccaccat cgaatatctg gtccgcttgc acgagggtca       60

gaccacgatg accgttccgg gcggcgtcga ggtgccggtg gaaaccgacg acatcgacca      120

cttcggcaac cgccgcctgc gtacggtcgg cgagctgatc caaaaccaga tccgggtcgg      180

catgtcgcgg atggagcggg tggtccggga gcggatgacc acccaggacg tggaggcgat      240

cacaccgcag acgttgatca acatccggcc ggtggtcgcc gcgatcaagg agttcttcgg      300

caccagccag ctgagcctat tcatggacca gaacaacccg ctgtcggggt tgacccacaa      360

gcgccgactg tcggcgctgg ggcccggcgg tctgtcacgt gagcgtgccg ggctggaggt      420

ccgcgacgtg cacccgtcgc actacggccg gatgtgcccg atcgaaaccc ctgaggggcc      480

caacatcggt ctgatcggct cgctgtcggt gtacgcgcgg gtcaacccgt tcgggttcat      540

cgaaacgccg taccgcaagg tg                                               562


<210>  11
<211>  562
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  11
gctgaccgaa gaagacgtcg tggccaccat cgaatatctg gtccgcttgc acgagggtca       60

gaccacgatg accgttccgg gcggcgtcga ggtgccggtg gaaaccgacg acatcgacca      120

cttcggcaac cgccgcctgc gtacggtcgg cgagctgatc caaaaccaga tccgggtcgg      180

catgtcgcgg atggagcggg tggtccggga gcggatgacc acccaggacg tggaggcgat      240

cacaccgcag acgttgatca acatccggcc ggtggtcgcc gcgatcaagg agttcttcgg      300

caccagccag ctgagccaat tcatggtcca gaacaacccg ctgtcggggt tgacccacaa      360

gcgccgactg tcggcgctgg ggcccggcgg tctgtcacgt gagcgtgccg ggctggaggt      420

ccgcgacgtg cacccgtcgc actacggccg gatgtgcccg atcgaaaccc ctgaggggcc      480

caacatcggt ctgatcggct cgctgtcggt gtacgcgcgg gtcaacccgt tcgggttcat      540

cgaaacgccg taccgcaagg tg                                               562


<210>  12
<211>  562
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  12
gctgaccgaa gaagacgtcg tggccaccat cgaatatctg gtccgcttgc acgagggtca       60

gaccacgatg accgttccgg gcggcgtcga ggtgccggtg gaaaccgacg acatcgacca      120

cttcggcaac cgccgcctgc gtacggtcgg cgagctgatc caaaaccaga tccgggtcgg      180

catgtcgcgg atggagcggg tggtccggga gcggatgacc acccaggacg tggaggcgat      240

cacaccgcag acgttgatca acatccggcc ggtggtcgcc gcgatcaagg agttcttcgg      300

caccagccag ctgagccaat tcatggacca gaacaacccg ctgtcggggt tgacctacaa      360

gcgccgactg tcggcgctgg ggcccggcgg tctgtcacgt gagcgtgccg ggctggaggt      420

ccgcgacgtg cacccgtcgc actacggccg gatgtgcccg atcgaaaccc ctgaggggcc      480

caacatcggt ctgatcggct cgctgtcggt gtacgcgcgg gtcaacccgt tcgggttcat      540

cgaaacgccg taccgcaagg tg                                               562


<210>  13
<211>  562
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  13
gctgaccgaa gaagacgtcg tggccaccat cgaatatctg gtccgcttgc acgagggtca       60

gaccacgatg accgttccgg gcggcgtcga ggtgccggtg gaaaccgacg acatcgacca      120

cttcggcaac cgccgcctgc gtacggtcgg cgagctgatc caaaaccaga tccgggtcgg      180

catgtcgcgg atggagcggg tggtccggga gcggatgacc acccaggacg tggaggcgat      240

cacaccgcag acgttgatca acatccggcc ggtggtcgcc gcgatcaagg agttcttcgg      300

caccagccag ctgagccaat tcatggacca gaacaacccg ctgtcggggt tgacccacaa      360

gcgccgactg ttggcgctgg ggcccggcgg tctgtcacgt gagcgtgccg ggctggaggt      420

ccgcgacgtg cacccgtcgc actacggccg gatgtgcccg atcgaaaccc ctgaggggcc      480

caacatcggt ctgatcggct cgctgtcggt gtacgcgcgg gtcaacccgt tcgggttcat      540

cgaaacgccg taccgcaagg tg                                               562


<210>  14
<211>  562
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  14
gctgaccgaa gaagacgtcg tggccaccat cgaatatctg gtccgcttgc acgagggtca       60

gaccacgatg accgttccgg gcggcgtcga ggtgccggtg gaaaccgacg acatcgacca      120

cttcggcaac cgccgcctgc gtacggtcgg cgagctgatc caaaaccaga tccgggtcgg      180

catgtcgcgg atggagcggg tggtccggga gcggatgacc acccaggacg tggaggcgat      240

cacaccgcag acgttgatca acatccggcc ggtggtcgcc gcgatcaagg agttcttcgg      300

caccagccag ctgagccaat tcatggacca gaacaacccg ctgtcggggt tgacccacaa      360

gcgccgactg tcggcgccgg ggcccggcgg tctgtcacgt gagcgtgccg ggctggaggt      420

ccgcgacgtg cacccgtcgc actacggccg gatgtgcccg atcgaaaccc ctgaggggcc      480

caacatcggt ctgatcggct cgctgtcggt gtacgcgcgg gtcaacccgt tcgggttcat      540

cgaaacgccg taccgcaagg tg                                               562


