                               SEQUENCE LISTING

<110> QUEST DIAGNOSTICS INVESTMENTS LLC
 
<120> METHODS FOR DETECTING BORDETELLA

<130> 034827-1166

<140> PCT/US2017/023735
<141> 2017-03-23

<150> 62/312,883
<151> 2016-03-24

<160> 20    

<170> PatentIn version 3.5

<210> 1
<211> 85
<212> DNA
<213> Bordetella pertussis

<400> 1
ccataagcat gcccgattga ccttcctacg tcgactcgaa atggtccagc aattgatcgc       60

ccatcaagtt tgtgtgcctg aagcg                                             85


<210> 2
<211> 65
<212> DNA
<213> Bordetella parapertussis

<400> 2
cggctcgacg aattgctgca agccaaccag ccgctgctga cggtctatgt cctgcgtgac       60

gaact                                                                   65


<210> 3
<211> 133
<212> DNA
<213> Bordetella holmesii

<400> 3
ggcacggatc gaggtttttg cgattgcgca gcagtagcca gcgactggac ttgatcaccc       60

ggcgggccgg cttgtcgtgc cgcaactggt tcgcttggtc tacacgcacc cggtctatca      120

cttcacggcc gta                                                         133


<210> 4
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 4
ggcacggatc gaggttttt                                                    19


<210> 5
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 5
tacggccgtg aagtgataga                                                   20


<210> 6
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 6
agtcgctggc tactgctgcg ca                                                22


<210> 7
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 7
cggctcgacg aattgc                                                       16


<210> 8
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 8
agttcgtcac gcaggacat                                                    19


<210> 9
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 9
caaccagccg ctgctgacgg tc                                                22


<210> 10
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 10
cgcttcaggc acacaaact                                                    19


<210> 11
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 11
ccataagcat gcccgatt                                                     18


<210> 12
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 12
tcaattgctg gaccatttcg agtcgac                                           27


<210> 13
<211> 577
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide

<400> 13
taaccccgcg ataaagacag aagattatgc atacgagatc aaaggagccg gccttttctc       60

tagagatctc ttattttcct tgaagtcacc tgtttatgtt aaagcaggtg agcaggtata      120

cattcagtac gatctgaaca aaagcaatgc agaacttgct ctcgactatg gttttgtgga      180

atcaaaccct aaacggaact catatacttt aacaatagag ataccagaat cagacccatt      240

ctttggggat aagttggata ttgctgagag taacaagatg ggtgagaccg gatactttga      300

catagtagac ggccagactc ttcccgctgg tatgcttcag taccttcggc ttgtggctct      360

tggcggtcca gatgctttct tattagaatc tatcttcaat aacaccatat ggggtcatct      420

tgaattgcct gtaagtcgta caaacgagga actcatatgc cgtgttgtca gagatgcctg      480

caaatctgct ctgtctggtt ttgatacgac cattgaagag gatgagaagc ttctggacaa      540

aggaaagctt gagcctaggt tggaaatggc tctcaag                               577


<210> 14
<211> 446
<212> DNA
<213> Bordetella holmesii

<400> 14
gtgttgtyaa tgccctcaac gatgctggtg ttgagccggt ggcgacagcg agacagaatc       60

ccgtgcagat aggcttttag cttgagcgcg aagtgagcca aggcggcgat gccgctgccc      120

tgagcctgtt gcagccagtg atcccatgcc tggcgggcgt agccggggtg ttggtagaac      180

cacagctgtt tgagctcatc gcgcatcaga taagcggtga gcaagggctg gttggcctgg      240

agcaactcgt ccaactttac cgattggcac ggatcgaggt ttttgcgatt gcgcagcagt      300

agccagcgac tggacttgat cacccggcgg gccggcttgt cgtgccgcaa ctggttcgct      360

tggtctacac gcacccggtc tatcacttca cggccgtact tggccacgac gtggaacagg      420

tcgtagacga tctcggcgtt ggggca                                           446


<210> 15
<211> 1190
<212> DNA
<213> Bordetella parapertussis

<400> 15
gctggatcgc aagttgatgg agtcgctggg aggctggcag ggctatggcg tcgaacgcgt       60

ggaatggccc gaagacccag ggcgcacgct gtcgatctat ttgaagccaa cggccaaggt      120

gatgctgtgc gagcagtgcg gcgcgcggtg tcgccaggtg catgagacca cggttcgacg      180

ggtgcgagat ctgccgttat tcgagtatcg ggtcgttctg cacgtgccgc gccgacgctt      240

gtggtgtgag caatgcggcg gcccgcgcct ggagcggctt gcctggctgg ggcgatatca      300

acgggtgacg gatcggctgg cgcaggcctg cagccaattg ctgcaatcga gcaacgtgca      360

ggcggtggcg aggttcttcg agctgggttg gcataccgtc aagacgctgg acaaggctcg      420

gctgcgtgcg tcggtgcgcg aaccggattg gtccaagatc gagtatttgg cgatggacga      480

gtttgccctg cacaaagggc atcgctacgc gacagtggtg gtcgatccga tcggcaggca      540

ggtgctgtgg attggcccag gacgctcacg cgagacggcc cgggcgttct tcgaacaatt      600

gccgcctggg gccgcccaac gcatcaaggc cgttgccatc gacatgacca ccgcctacga      660

gttggagatc caggcccaca gcccacaggc ggagatcgtc tatgacttgt tccatgtcgt      720

ggccaagtat ggacgagagg tcattgatcg ggtgcgcgtg gatcaggcca atcaactacg      780

ccaggatcgt cccgcacgca ggatcatcaa atcgagtcgc tggctgctgc tgcgcaaccg      840

tgacaacctg gatcggcagc aggccgtccg gctcgacgaa ttgctgcaag ccaaccagcc      900

gctgctgacg gtctatgtcc tgcgtgacga actcaaacgg ctctggttct accaaagacc      960

tgcctgggca agacaagcct ggaaccactg gtacgagcag gccgagcaaa gcggaatagc     1020

cgccttgaac accttcgctc agcgcttgaa aggctatctg cacggcatcc tggccagatg     1080

ccgacatccc ctgaacacca gcattgtcga gggcatcaac aacactatca aggtcatcaa     1140

gcggcgcgct tacggctacc gcgaccagga atacttcttc ctcaaaatcc                1190


<210> 16
<211> 1055
<212> DNA
<213> Bordetella pertussis

<400> 16
gttaggtgtg aagattcaat aggttgtatg catggttcat ccgaaccgga tttgagaaac       60

tggaaatcgc caccccccca gttcactcaa ggagcccggc cggatgaaca cccataagca      120

tgcccgattg accttcctac gtcgactcga aatggtccag caattgatcg cccatcaagt      180

ttgtgtgcct gaagcggccc gcgcctatgg ggtcaccgcg ccgactgtgc gcaaatggct      240

gggccgcttc ctggctcagg gccaggcggg cttggccgat gcgtcctcgc gcccgacggt      300

ctcgccccga gcgattgcgc cggccaaggc gctggctatc gtggagctgc gccgcaagcg      360

gctgacccaa gcgcgcatcg cccaggcgct gggcgtgtca gccagcaccg tcagccgcgt      420

cctggcccgc gccggtctgt cgcacctggc cgacctggag ccggccgagc cggtggtgcg      480

ctacgagcat caggcccccg gcgatctgct gcacatcgac atcaagaagc tgggacgtat      540

ccagcgccct ggccaccggg tcacgggcca ccgacgcgat accgttgagg gggccggctg      600

ggacttcgtc ttcgtggcca tcgatgacca cgcccgcgtg gccttcaccg acatccaccc      660

cgacgagcgc ttccccagcg ccgtccagtt cctcaaggac gcagtggcct actaccagcg      720

cctgggcgtg accatccagc gcttgctcac cgacaatggc tcggcctttc gcagccgcgc      780

cttcgccgcg ctgtgccatg agctgggcat caagcaccgc tttacccgac cttaccgccc      840

acagaccaat ggcaaggccg aacgcttcat ccagtcggcc ttgcgtgagt gggcttacgc      900

tcacacctac cagaactccc aacaccgagc cgatgccatg aaatcctggt tacaccacta      960

caactggcat cgaccccacc aaggcatcgg gcgcgctgta cccatctcca gactcaacct     1020

ggacgaatac aacctattga cagttcacag ttagg                                1055


<210> 17
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 17
gcttcagtac cttcggcttg                                                   20


<210> 18
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 18
ttgcaggcat ctctgacaac                                                   20


<210> 19
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 19
tggctcttgg cggtccagat g                                                 21


<210> 20
<211> 150
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide

<400> 20
gcttcagtac cttcggcttg tggctcttgg cggtccagat gctttcttat tagaatctat       60

cttcaataac accatatggg gtcatcttga attgcctgta agtcgtacaa acgaggaact      120

catatgccgt gttgtcagag atgcctgcaa                                       150


