                         SEQUENCE LISTING

<110>  Board of Regents of the University of Oklahoma
 
<120>  NOVEL pRNA THREE-WAY JUNCTIONS

<130>  50183-P009WO

<160>  110   

<170>  PatentIn version 3.5

<210>  1
<211>  20
<212>  RNA
<213>  Phi29

<400>  1
cuugucaugu guauguugcc                                                   20


<210>  2
<211>  21
<212>  RNA
<213>  Phi29

<400>  2
ggcacauacu uuguugauag g                                                 21


<210>  3
<211>  18
<212>  RNA
<213>  Phi29

<400>  3
ccugucaauc auggcaag                                                     18


<210>  4
<211>  23
<212>  RNA
<213>  GA1

<400>  4
cgauauauag gcugugcaag auu                                               23


<210>  5
<211>  20
<212>  RNA
<213>  GA1

<400>  5
aaucuugaca gguuguuggc                                                   20


<210>  6
<211>  20
<212>  RNA
<213>  GA1

<400>  6
gcuagcaaua cuauauaucg                                                   20


<210>  7
<211>  19
<212>  RNA
<213>  SF5

<400>  7
gcuaauguau guguguccg                                                    19


<210>  8
<211>  20
<212>  RNA
<213>  SF5

<400>  8
cggacagcag gggagcgugc                                                   20


<210>  9
<211>  18
<212>  RNA
<213>  SF5

<400>  9
gcacacucuu gcauuagc                                                     18


<210>  10
<211>  21
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  10
gcaauaguau ggcacaugug c                                                 21


<210>  11
<211>  19
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  11
gcacauguca cgggguagg                                                    19


<210>  12
<211>  19
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  12
ccuacccucu uacuauugc                                                    19


<210>  13
<211>  19
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  13
cuugucaugg uauguugcc                                                    19


<210>  14
<211>  20
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  14
ggcacauacu uguugauagg                                                   20


<210>  15
<211>  19
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  15
ggcacauacu guugauagg                                                    19


<210>  16
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  16
ggcacauacg uugauagg                                                     18


<210>  17
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  17
uugucauggu auguugcc                                                     18


<210>  18
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  18
ccugucaauc auggcaa                                                      17


<210>  19
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  19
uugucauggu auguugc                                                      17


<210>  20
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  20
gcacauacug uugauagg                                                     18


<210>  21
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  21
gcacauacug uugauag                                                      17


<210>  22
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  22
cugucaauca uggcaa                                                       16


<210>  23
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  23
ugucauggua uguugc                                                       16


<210>  24
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  24
cugucaauca uggca                                                        15


<210>  25
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  25
ugucauggua uguug                                                        15


<210>  26
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi 29

<400>  26
cacauacugu ugauag                                                       16


<210>  27
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  27
cacauacugu ugaua                                                        15


<210>  28
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  28
ugucaaucau ggca                                                         14


<210>  29
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  29
gucaugguau guug                                                         14


<210>  30
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  30
ugucaaucau ggc                                                          13


<210>  31
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  31
gucaugguau guu                                                          13


<210>  32
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  32
acauacuguu gaua                                                         14


<210>  33
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  33
acauacuguu gau                                                          13


<210>  34
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  34
gucaaucaug gc                                                           12


<210>  35
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  35
ucaugguaug uu                                                           12


<210>  36
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  36
gucaaucaug g                                                            11


<210>  37
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  37
gucaaucaug g                                                            11


<210>  38
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  38
cauacuguug au                                                           12


<210>  39
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  39
cauacuguug a                                                            11


<210>  40
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29

<400>  40
ucaaucaugg                                                              10


<210>  41
<211>  20
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  41
caauaguaug gcacaugugc                                                   20


<210>  42
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  42
ccuacccucu uacuauug                                                     18


<210>  43
<211>  19
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  43
caauaguaug gcacaugug                                                    19


<210>  44
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  44
cacaugucac gggguagg                                                     18


<210>  45
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  45
cacaugucac gggguagg                                                     18


<210>  46
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  46
cuacccucuu acuauug                                                      17


<210>  47
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  47
aauaguaugg cacaugug                                                     18


<210>  48
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  48
cuacccucuu acuauu                                                       16


<210>  49
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  49
aauaguaugg cacaugu                                                      17


<210>  50
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  50
acaugucacg ggguagg                                                      17


<210>  51
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  51
acaugucacg ggguag                                                       16


<210>  52
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  52
uacccucuua cuauu                                                        15


<210>  53
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  53
auaguauggc acaugu                                                       16


<210>  54
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  54
uacccucuua cuau                                                         14


<210>  55
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  55
auaguauggc acaug                                                        15


<210>  56
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  56
caugucacgg gguag                                                        15


<210>  57
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  57
caugucacgg ggua                                                         14


<210>  58
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  58
acccucuuac uau                                                          13


<210>  59
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  59
uaguauggca caug                                                         14


<210>  60
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  60
acccucuuac ua                                                           12


<210>  61
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  61
uaguauggca cau                                                          13


<210>  62
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  62
augucacggg gua                                                          13


<210>  63
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  63
augucacggg g                                                            11


<210>  64
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  64
cccucuuacu a                                                            11


<210>  65
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  65
uaguauggca ca                                                           12


<210>  66
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  66
ugucacgggg                                                              10


<210>  67
<211>  9
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  67
ugucacggg                                                                9


<210>  68
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  68
ccucuuacua                                                              10


<210>  69
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  69
cacaugucac gggguag                                                      17


<210>  70
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  70
cacaugucac ggggua                                                       16


<210>  71
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  71
caugucacgg gg                                                           12


<210>  72
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  72
cccucuuacu au                                                           12


<210>  73
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  73
aguauggcac                                                              10


<210>  74
<211>  8
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  74
gucacggg                                                                 8


<210>  75
<211>  8
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2

<400>  75
ccucuuac                                                                 8


<210>  76
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  76
gcuaauguau guuguccg                                                     18


<210>  77
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  77
cuaauguaug uugucc                                                       16


<210>  78
<211>  18
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  78
ggacagcagg ggagcgug                                                     18


<210>  79
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  79
cacacucuug cauuag                                                       16


<210>  80
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  80
uaauguaugu uguc                                                         14


<210>  81
<211>  16
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  81
gacagcaggg gagcgu                                                       16


<210>  82
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  82
acacucuugc auua                                                         14


<210>  83
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  83
aauguauguu gu                                                           12


<210>  84
<211>  14
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  84
acagcagggg agcg                                                         14


<210>  85
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  85
cacucuugca uu                                                           12


<210>  86
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  86
auguauguug                                                              10


<210>  87
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  87
cagcagggga gc                                                           12


<210>  88
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  88
acucuugcau                                                              10


<210>  89
<211>  19
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  89
cggacagcag ggagcgugc                                                    19


<210>  90
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  90
cuaauguaug ugugucc                                                      17


<210>  91
<211>  17
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  91
ggacagcagg gagcgug                                                      17


<210>  92
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  92
uaauguaugu guguc                                                        15


<210>  93
<211>  15
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  93
gacagcaggg agcgu                                                        15


<210>  94
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  94
aauguaugug ugu                                                          13


<210>  95
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  95
acagcaggga gcg                                                          13


<210>  96
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  96
cacucuugca uu                                                           12


<210>  97
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  97
auguaugugu g                                                            11


<210>  98
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5

<400>  98
cagcagggag c                                                            11


<210>  99
<211>  13
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  GA1

<400>  99
uauaggcugu gca                                                          13


<210>  100
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  GA1

<400>  100
ugacagguug u                                                            11


<210>  101
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  GA1

<400>  101
gcaauacuau a                                                            11


<210>  102
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29


<220>
<221>  misc_RNA
<222>  (1)..(10)
<223>  W represents A, C, G and U nucleotides which form pairs according
       to canonical Watson-Crick base pairing, or non-canonical base 
       pairing in the assembled 3WJ construct

<400>  102
wwwwwwwwww                                                              10


<210>  103
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29


<220>
<221>  misc_RNA
<222>  (1)..(11)
<223>  N represents A, C, G, and U nucleotides which are unpaired in the
       assembled 3WJ construct

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is a, c, g, or u

<400>  103
cccccncccc c                                                            11


<210>  104
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Phi29


<220>
<221>  misc_RNA
<222>  (1)..(10)
<223>  W represents A, C, G and U nucleotides which form pairs according
       to canonical Watson-Crick base pairing, or non-canonical base 
       pairing in the assembled 3WJ construct

<400>  104
wwwwwccccc                                                              10


<210>  105
<211>  10
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2


<220>
<221>  misc_RNA
<222>  (1)..(10)
<223>  Nucleotides form pairs according to canonical Watson-Crick base 
       pairing, or non-canonical base pairing in the assembled 3WJ 
       construct

<400>  105
cccccccccc                                                              10


<210>  106
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2


<220>
<221>  misc_RNA
<222>  (1)..(11)
<223>  W represents A, C, G and U nucleotides which form pairs according
       to canonical Watson-Crick base pairing, or non-canonical base 
       pairing in the assembled 3WJ construct. N represents A, C, G, and
       U nucleotides which are unpaired in the assembled 3WJ co

<220>
<221>  misc_RNA
<222>  (1)..(11)
<223>  W represents A, C, G and U nucleotides which form pairs according
       to canonical Watson-Crick base pairing, or non-canonical base 
       pairing in the assembled 3WJ construct. N represents A, C, G, and
       U nucleotides which are unpaired in the assembled 3WJ construct

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is a, c, g, or u

<400>  106
wwwwwncccc c                                                            11


<210>  107
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  M2


<220>
<221>  misc_RNA
<222>  (1)..(12)
<223>  W represents A, C, G and U nucleotides which form pairs according
       to canonical Watson-Crick base pairing, or non-canonical base 
       pairing in the assembled 3WJ construct. N represents A, C, G, and
       U nucleotides which are unpaired in the assembled 3WJ construct

<220>
<221>  misc_feature
<222>  (10)..(10)
<223>  n is a, c, g, or u

<400>  107
wwwwwwwwwn ww                                                           12


<210>  108
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5


<220>
<221>  misc_RNA
<222>  (1)..(12)
<223>  W represents A, C, G and U nucleotides which form pairs according
       to canonical Watson-Crick base pairing, or non-canonical base 
       pairing in the assembled 3WJ construct. N represents A, C, G, and
       U nucleotides which are unpaired in the assembled 3WJ construct

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  n is a, c, g, or u

<400>  108
wwwwwnnccc cc                                                           12


<210>  109
<211>  11
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5


<220>
<221>  misc_RNA
<222>  (1)..(11)
<223>  W represents A, C, G and U nucleotides which form pairs according
       to canonical Watson-Crick base pairing, or non-canonical base 
       pairing in the assembled 3WJ construct. N represents A, C, G, and
       U nucleotides which are unpaired in the assembled 3WJ construct

<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  n is a, c, g, or u

<400>  109
wwwwwwwwnw w                                                            11


<210>  110
<211>  12
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  SF5


<220>
<221>  misc_RNA
<222>  (1)..(12)
<223>  N represents A, C, G, and U nucleotides which are unpaired in the
       assembled 3WJ construct

<220>
<221>  misc_feature
<222>  (6)..(7)
<223>  n is a, c, g, or u

<400>  110
cccccnnccc cc                                                           12


