                         SEQUENCE LISTING

<110>  T2 Biosystems, Inc.
 
<120>  RAPID ANTIMICROBIAL SUSCEPTIBILITY TESTING USING HIGH-SENSITIVITY
        DIRECT DETECTION METHODS

<130>  50713-099WO2

<150>  US 62/281,603
<151>  2016-01-21

<160>  77    

<170>  PatentIn version 3.5

<210>  1
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  1
cgttttccaa atctgtaaca gactggg                                           27


<210>  2
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  2
aggacgttga taggttggat gtgga                                             25


<210>  3
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  3
ggtagctatg tagggaaggg ataaacgctg a                                      31


<210>  4
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  4
gcgctaagga gcttaacttc tgtgttcg                                          28


<210>  5
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  5
gacggttgtc ccggtttaag ca                                                22


<210>  6
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  6
gctggtatct tcgactggtc t                                                 21


<210>  7
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  7
aggctgggtg tgtaagcgtt gt                                                22


<210>  8
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  8
caagcaattc ggttggatat ccgtt                                             25


<210>  9
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (16)..(16)
<223>  n is 2,6-diaminopurine

<400>  9
ggtaatgaat tacctntctc tgctggtttc ttctt                                  35


<210>  10
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n is 2,6-diaminopurine

<400>  10
accagcatct tcngcatctt ctgtaaa                                           27


<210>  11
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (13)..(13)
<223>  n is 2,6-diaminopurine

<400>  11
gaagttatgt ttnctattcg aatcgtggtc cagt                                   34


<210>  12
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  12
gttgtaaagc catgatgctc gtaacca                                           27


<210>  13
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  13
ggcatgcctg tttgagcgtc                                                   20


<210>  14
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  14
gcttattgat atgcttaagt tcagcgggt                                         29


<210>  15
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  15
tgaggcttga ctatacaaca cc                                                22


<210>  16
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  16
ctaaaatgaa cagataaagt aagattcaa                                         29


<210>  17
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  17
nttttttttt tgaggcttga ctatacaaca cc                                     32


<210>  18
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (39)..(39)
<223>  n is 3' amino modifier

<400>  18
ctaaaatgaa cagataaagt aagattcaat ttttttttn                              39


<210>  19
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  19
aaaacttata tgacttcaaa tccagtttt                                         29


<210>  20
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  20
tttactcaat aaaagataac accacag                                           27


<210>  21
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  21
nttttttttt aaaacttata tgacttcaaa tccagtttt                              39


<210>  22
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  n is 3' amino modifier

<400>  22
tttactcaat aaaagataac accacagttt tttttttn                               38


<210>  23
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  23
tggataagta aaagcaactt ggtt                                              24


<210>  24
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  24
aatgaagatt caactcaata agaaacaaca                                        30


<210>  25
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  25
nttttttttt tggataagta aaagcaactt ggtt                                   34


<210>  26
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (40)..(40)
<223>  n is 3' amino modifier

<400>  26
aatgaagatt caactcaata agaaacaaca tttttttttn                             40


<210>  27
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  27
taccaaggcg cttgagagaa ctc                                               23


<210>  28
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  28
ctggtgtgta ggtgaagtc                                                    19


<210>  29
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  29
nttttttttt taccaaggcg cttgagagaa ctc                                    33


<210>  30
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (29)..(29)
<223>  n is 3' amino modifier

<400>  30
ctggtgtgta ggtgaagtct ttttttttn                                         29


<210>  31
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  31
gtgtgttgta gggtgaagtc gac                                               23


<210>  32
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  32
caccttgaaa tcacatacct ga                                                22


<210>  33
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  33
nttttttttt gtgtgttgta gggtgaagtc gac                                    33


<210>  34
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  n is 3' amino modifier

<400>  34
caccttgaaa tcacatacct gatttttttt tn                                     32


<210>  35
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  35
ccatttgaag ttgtttatta tgc                                               23


<210>  36
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  36
gggaaatgat taattatgca ttaaatc                                           27


<210>  37
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' amino modifier C12

<400>  37
nttttttttt ccatttgaag ttgtttatta tgc                                    33


<210>  38
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (37)..(37)
<223>  n is 3' amino modifier

<400>  38
gggaaatgat taattatgca ttaaatcttt ttttttn                                37


<210>  39
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  39
tttttcagat ttaggattag ttgatt                                            26


<210>  40
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  40
gatccgtatt ggttatatca tc                                                22


<210>  41
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  41
nttttttttt tttttcagat ttaggattag ttgatt                                 36


<210>  42
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  n is 3' amino modifier

<400>  42
gatccgtatt ggttatatca tctttttttt tn                                     32


<210>  43
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  43
nttttttttt tggaataata cgccgaccag c                                      31


<210>  44
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (35)..(35)
<223>  n is 3' amino modifier

<400>  44
aaggatctat ttcagtatga tgcagttttt ttttn                                  35


<210>  45
<211>  200
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  45
tgccgaagcg ttttccaaat ctgtaacaga ctgggctgat tgaatcttac tttatctgtt       60

cattttagct agaggtataa ctaaatcaag ttgtcttgca tatttaagaa tcgattgatg      120

ctttatatac aactgcttgg gtgttgtata gtcaagcctc acgagcaatt agtattggtc      180

agcttcacat atcactatgc                                                  200


<210>  46
<211>  200
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  46
gcatgggaac aggtgtatcc ttctcgctat cgccaccaca ctgggtgttg tttcttattg       60

agttgaatct tcattcactc aaaactggat tgaagtttga atcaaaataa ccaagttgct      120

tttacttatc cattctttgg ttaagtcctc gaccgattag tattggtccg ctccaactat      180

cactagcctt ccacttccaa                                                  200


<210>  47
<211>  200
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  47
gcatggttac aggtgtatcc ttctcgctat cgccaccaca ctgtggtgtt atcttttatt       60

gagtaaattt tgttcactca aaactggatt tgaagtcata taagtttttt tccgagttct      120

tttcttttaa cctattggtt aagtcctcga tcgattagta tcagtccgct ccatacatca      180

ctgtacttcc actcctgacc                                                  200


<210>  48
<211>  200
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  48
cagctccatc cgcagggact tcacctacac accagcgtgc cttctcccga agttacggca       60

ccattttgcc tagttccttc acccgagttc tctcaagcgc cttggtattc tctacctgac      120

cacctgtgtc ggtttggggt acgatttgat gttacctgat gcttagaggc ttttcctgga      180

agcagggcat ttgttacttc                                                  200


<210>  49
<211>  169
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  49
cgcttgggct tacgtctatc cggattcagg tatgtgattt caaggtgttt tgcggttcat       60

gcgaactttc ggttcgtcga cttcacctta caacacacaa tcgtcagatt gtttgggtgt      120

tatatggtca agcctcacgg gcaattagta ctggttagct caacgcctc                  169


<210>  50
<211>  151
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  50
tttaccacta acaccataga aattataacg gtcaatgcca tgatttaatg cataattaat       60

catttcccat tgcactgcat aacttccggc aaaatgacgg aatgcatttg atgtaccacc      120

agcataataa acaacttcaa atgggttgat a                                     151


<210>  51
<211>  186
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  51
tgtgatttaa acaagtttac taaggcatca tttttctcgc gaccttcaaa tggcacgata       60

tctttatcat atagatgata taaccaatac ggatctaatt taacatataa acattgatgt      120

tgctgtaaat atttatctaa ctcttttaaa taataatcaa ctaatcctaa atctgaaaaa      180

tccatt                                                                 186


<210>  52
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  52
gcattaatcg acggtatggt tgacc                                             25


<210>  53
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  53
cctgctgaaa caggttttcc cacata                                            26


<210>  54
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  54
agtgatgatg agttgtttgc cagtg                                             25


<210>  55
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  55
tgaattgtcg ccgcgtgacc ag                                                22


<210>  56
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  56
acccagcggt ttgagggaga aac                                               23


<210>  57
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  57
aaagtttgaa gatatacgtg gtggacgtta                                        30


<210>  58
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  58
cgcacgcgca agatggaaac g                                                 21


<210>  59
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  59
aagttcagcg ggtattccta cct                                               23


<210>  60
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  60
agctttttgt tgtctcgcaa cactcgc                                           27


<210>  61
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  61
ctaccaaaca caatgtgttt gagaag                                            26


<210>  62
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  62
cctgatttga ggtcaaactt aaagacgtct g                                      31


<210>  63
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (22)..(22)
<223>  n is 5' 5-Nitroindole

<400>  63
agtcctacct gatttgaggt cnaa                                              24


<210>  64
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (4)..(4)
<223>  n is 5' 5-Nitroindole

<400>  64
ccgngggttt gagggagaaa t                                                 21


<210>  65
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  65
aaagttatga aataaattgt ggtggccact agc                                    33


<210>  66
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  66
acccgggggt ttgagggaga aa                                                22


<210>  67
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  67
agtcctacct gatttgaggt cgaa                                              24


<210>  68
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  68
ccgagggttt gagggagaaa t                                                 21


<210>  69
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  69
ggaagggatc aggtggttca ctctt                                             25


<210>  70
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  70
aaaacttatg tgacttcaaa tccagtttt                                         29


<210>  71
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  71
tttactcaat aaaagataac accacagt                                          28


<210>  72
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  72
nttttttttt aaaacttatg tgacttcaaa tccagtttt                              39


<210>  73
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  73
tctgacgatt gtgtgttgta agg                                               23


<210>  74
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  74
ggatagacgt aagcccaagc                                                   20


<210>  75
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is 5' amino modifier C12

<400>  75
nttttttttt tctgacgatt gtgtgttgta agg                                    33


<210>  76
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct


<220>
<221>  misc_feature
<222>  (30)..(30)
<223>  n is 3' amino modifier

<400>  76
ggatagacgt aagcccaagc tttttttttn                                        30


<210>  77
<211>  198
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic Construct

<400>  77
gcatggttac aggtgtatcc ttctcgctat cgccaccaca ctgtggtgtt atcttttatt       60

gagtaaattt tgttcactca aaactggatt tgaagtcata taagtttttt tccgagttct      120

tttcttttaa cctattggtt aagtcctcga tcgattagta tcagtccgct ccatacatca      180

ctgtacttcc actcctga                                                    198


