                               SEQUENCE LISTING

<110> THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
 
<120> NANO-SENSORS FOR NUCLEIC ACID DETECTION AND DISCRIMINATION

<130> 09062-8320.WO00

<140> PCT/US2016/068547
<141> 2016-12-23

<150> 62/387,460
<151> 2016-12-23

<150> 62/379,549
<151> 2016-08-25

<150> 62/333,064
<151> 2016-05-06

<160> 63    

<170> PatentIn version 3.5

<210> 1
<211> 70
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 1
acctactcaa ccatacatca ctctacctca aacactcgaa tctcccaaat actaagctgt       60

tcaactcacc                                                              70


<210> 2
<211> 96
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 2
cctccagttc caagtaccac catcacacct actcaaccat acatcactct acctcaaaca       60

ctcgaatctc ccaaatacta agctgttcaa ctcacc                                 96


<210> 3
<211> 70
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 3
ttctggggag tgggagatgt tggctagatt tacggtataa tgaggtagag tgatgtatgg       60

ttgagtaggt                                                              70


<210> 4
<211> 70
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (42)..(42)
<223> Inosine

<220>
<221> modified_base
<222> (44)..(45)
<223> Inosine

<220>
<221> modified_base
<222> (48)..(48)
<223> Inosine

<220>
<221> modified_base
<222> (50)..(50)
<223> Inosine

<220>
<221> modified_base
<222> (52)..(52)
<223> Inosine

<220>
<221> modified_base
<222> (55)..(55)
<223> Inosine

<220>
<221> modified_base
<222> (59)..(60)
<223> Inosine

<220>
<221> modified_base
<222> (63)..(63)
<223> Inosine

<220>
<221> modified_base
<222> (65)..(65)
<223> Inosine

<220>
<221> modified_base
<222> (68)..(69)
<223> Inosine

<400> 4
ttctggggag tgggagatgt tggctagatt tacggtataa tnanntanan tnatntatnn       60

ttnantannt                                                              70


<210> 5
<211> 96
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (42)..(42)
<223> Inosine

<220>
<221> modified_base
<222> (44)..(45)
<223> Inosine

<220>
<221> modified_base
<222> (48)..(48)
<223> Inosine

<220>
<221> modified_base
<222> (50)..(50)
<223> Inosine

<220>
<221> modified_base
<222> (52)..(52)
<223> Inosine

<220>
<221> modified_base
<222> (55)..(55)
<223> Inosine

<220>
<221> modified_base
<222> (59)..(60)
<223> Inosine

<220>
<221> modified_base
<222> (63)..(63)
<223> Inosine

<220>
<221> modified_base
<222> (65)..(65)
<223> Inosine

<220>
<221> modified_base
<222> (68)..(69)
<223> Inosine

<400> 5
ttctggggag tgggagatgt tggctagatt tacggtataa tnanntanan tnatntatnn       60

ttnantannt gtgatggtgg tacttggaac tggagg                                 96


<210> 6
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 6
ggtgagttga acagcttagt atttgggaga                                        30


<210> 7
<211> 38
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 7
ataccgtaaa tctagccaac atctcccact ccccagaa                               38


<210> 8
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 8
ttcgagtgtt tgaggtagag tgatgtatgg ttgagtaggt                             40


<210> 9
<211> 38
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 9
cgagtgtttg aggtagagtg atgtatggtt gagtaggt                               38


<210> 10
<211> 37
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 10
gagtgtttga ggtagagtga tgtatggttg agtaggt                                37


<210> 11
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 11
agtgtttgag gtagagtgat gtatggttga gtaggt                                 36


<210> 12
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 12
gtgtttgagg tagagtgatg tatggttgag taggt                                  35


<210> 13
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 13
tgtttgaggt agagtgatgt atggttgagt aggt                                   34


<210> 14
<211> 33
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 14
gtttgaggta gagtgatgta tggttgagta ggt                                    33


<210> 15
<211> 32
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 15
tttgaggtag agtgatgtat ggttgagtag gt                                     32


<210> 16
<211> 31
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 16
ttgaggtaga gtgatgtatg gttgagtagg t                                      31


<210> 17
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 17
tgaggtagag tgatgtatgg ttgagtaggt                                        30


<210> 18
<211> 96
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (27)..(28)
<223> Inosine

<220>
<221> modified_base
<222> (30)..(30)
<223> Inosine

<220>
<221> modified_base
<222> (33)..(33)
<223> Inosine

<220>
<221> modified_base
<222> (37)..(37)
<223> Inosine

<220>
<221> modified_base
<222> (40)..(40)
<223> Inosine

<220>
<221> modified_base
<222> (43)..(44)
<223> Inosine

<220>
<221> modified_base
<222> (48)..(49)
<223> Inosine

<220>
<221> modified_base
<222> (53)..(53)
<223> Inosine

<220>
<221> modified_base
<222> (56)..(56)
<223> Inosine

<220>
<221> modified_base
<222> (58)..(59)
<223> Inosine

<220>
<221> modified_base
<222> (62)..(64)
<223> Inosine

<400> 18
gccatagtta gagcatgcgc catagtnntn ttntttnttn ttnntttnnt ttnttntnnt       60

tnnntccctt ccgaatgcag ctgccattcc gaatgc                                 96


<210> 19
<211> 96
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 19
cgcaatccac cgatcatccg caatccaaat ctcccaacca caacaaacca aaccaacaac       60

aaacaacacc actatggcgc atgctctaac tatggc                                 96


<210> 20
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 20
ggtgttgttt gttgttggtt tggtttgttg tggtttttag atttggattg aagtgagcgt       60


<210> 21
<211> 48
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 21
acgctcactt aaatctaaaa accacaacaa accaaaccaa caacaaac                    48


<210> 22
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 22
aagggaccca accacaa                                                      17


<210> 23
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 23
ttttttaagg gacccaacca caa                                               23


<210> 24
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 24
ttttttaagg acccaaccac aa                                                22


<210> 25
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 25
cggatgatcg gtggattgcg                                                   20


<210> 26
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 26
gcattcggaa tggcagctgc attc                                              24


<210> 27
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 27
gcattcggaa tggcagctgc attcttt                                           27


<210> 28
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 28
cggatgatcg gtggattgcg ttt                                               23


<210> 29
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 29
tgcattcgga atggcagctg cattc                                             25


<210> 30
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 30
ggtgttgttt gttgttggtt tggtttgttg tggttgggag atttggattg aagtgagcgt       60


<210> 31
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 31
ggtgttgttt gttgttggtt tggtttgtta taattaaaag atttggattg aagtgagcgt       60


<210> 32
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 32
ggtgttgttt gttattaatt taatttatta taattaaaag atttggattg aagtgagcgt       60


<210> 33
<211> 52
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 33
acgctcactt caatccaaat ctaaaaacca caacaaacca aaccaacaac aa               52


<210> 34
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 34
tttttttaag ggacccaacc acaa                                              24


<210> 35
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 35
tttttttaag ggacccaacc acaa                                              24


<210> 36
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 36
tttttttaag ggacccaacc acaa                                              24


<210> 37
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 37
gcattcggaa tggcagctgc attcggt                                           27


<210> 38
<211> 71
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (7)..(7)
<223> Inosine

<220>
<221> modified_base
<222> (31)..(31)
<223> Inosine

<220>
<221> modified_base
<222> (35)..(35)
<223> Inosine

<220>
<221> modified_base
<222> (39)..(39)
<223> Inosine

<400> 38
tgaaagngtt ttaataatag aattttaaaa nactngtana tttttttttt ctctatcaat       60

ctctaacacc c                                                            71


<210> 39
<211> 71
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 39
gggtgttaga gattgataga gcggccttat ttctaccagt cttttaaaat tctattatta       60

aaaccctttc a                                                            71


<210> 40
<211> 47
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 40
tgaaagggtt ttaataatag aattttaaaa gactggtaga aataagg                     47


<210> 41
<211> 47
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 41
tgaaagggtt ttaataatat aattttaaaa gactggtaga aataagg                     47


<210> 42
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 42
taataataga attttaaaag actggaataa                                        30


<210> 43
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 43
ttattccagt cttttaaaat tctattatta                                        30


<210> 44
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 44
actgatgcac tgattacctg ctacgatcga                                        30


<210> 45
<211> 55
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 45
gggtgttaga gattgataga gcggccttat ccagtatttt aaaattctat tatta            55


<210> 46
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (9)..(9)
<223> Inosine

<220>
<221> modified_base
<222> (20)..(20)
<223> Inosine

<220>
<221> modified_base
<222> (24)..(25)
<223> Inosine

<400> 46
taataaatna attttaaaan actnnttttt tttttctcta tcaatctcta acaccc           56


<210> 47
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 47
taataataga attttaaaag actggaataa                                        30


<210> 48
<211> 30
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 48
taataataga agtttaaaag actggaataa                                        30


<210> 49
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 49
gggtgttaga gattgataga gcggccttat tccagtcttt taaaattcta ttatta           56


<210> 50
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (9)..(9)
<223> Inosine

<220>
<221> modified_base
<222> (20)..(20)
<223> Inosine

<220>
<221> modified_base
<222> (24)..(25)
<223> Inosine

<400> 50
taataatana attttaaaan actnnttttt tttttctcta tcaatctcta acaccc           56


<210> 51
<211> 70
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (27)..(28)
<223> Inosine

<220>
<221> modified_base
<222> (30)..(30)
<223> Inosine

<220>
<221> modified_base
<222> (33)..(33)
<223> Inosine

<220>
<221> modified_base
<222> (37)..(37)
<223> Inosine

<220>
<221> modified_base
<222> (40)..(40)
<223> Inosine

<220>
<221> modified_base
<222> (43)..(44)
<223> Inosine

<220>
<221> modified_base
<222> (48)..(49)
<223> Inosine

<220>
<221> modified_base
<222> (53)..(53)
<223> Inosine

<220>
<221> modified_base
<222> (56)..(56)
<223> Inosine

<220>
<221> modified_base
<222> (58)..(59)
<223> Inosine

<220>
<221> modified_base
<222> (62)..(64)
<223> Inosine

<400> 51
gccatagtta gagcatgcgc catagtnntn ttntttnttn ttnntttnnt ttnttntnnt       60

tnnntccctt                                                              70


<210> 52
<211> 76
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 52
caatccaaat ctcccaacca caacaaacca aaccaacaac aaacaacacc actatggcgc       60

atgctctaac tatggc                                                       76


<210> 53
<211> 25
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (9)..(9)
<223> Inosine

<220>
<221> modified_base
<222> (20)..(20)
<223> Inosine

<220>
<221> modified_base
<222> (24)..(25)
<223> Inosine

<400> 53
uaauaauana auuuuaaaan acunn                                             25


<210> 54
<211> 35
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 54
ccagucuuuu aaaauucuau uauuaaaacc cucuu                                  35


<210> 55
<211> 31
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 55
ggguuuuaau aauagaauuu uaaaagacug g                                      31


<210> 56
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 56
ccagtctttt aaaattctat tatta                                             25


<210> 57
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 57
taataataga attttaaaag actgg                                             25


<210> 58
<211> 25
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 58
uaauaauaga auuuuaaaag acugg                                             25


<210> 59
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (9)..(9)
<223> Inosine

<220>
<221> modified_base
<222> (20)..(20)
<223> Inosine

<220>
<221> modified_base
<222> (24)..(25)
<223> Inosine

<400> 59
taataatana attttaaaan actnn                                             25


<210> 60
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 60
ccagtctttt aaaattctat tattaaaacc ctctt                                  35


<210> 61
<211> 31
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 61
gggttttaat aatagaattt taaaagactg g                                      31


<210> 62
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (7)..(7)
<223> Inosine

<220>
<221> modified_base
<222> (31)..(31)
<223> Inosine

<220>
<221> modified_base
<222> (35)..(35)
<223> Inosine

<220>
<221> modified_base
<222> (39)..(39)
<223> Inosine

<400> 62
tgaaagngtt ttaataatag aattttaaaa nactngtana                             40


<210> 63
<211> 47
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 63
ccttatttct accagtcttt taaaattcta ttattaaaac cctttca                     47


