                         SEQUENCE LISTING

<110>  The Regents of the University of California
       Korea Advanced Institute of Science and Technology
       Shriners Hospitals for Children
 
<120>  REPETITIVE ELEMENT (RE)-BASED GENOME ANALYSIS AND DYNAMIC 
       GENETICS SURVEILLANCE SYSTEMS

<130>  42497-0002WO1

<140>  PCT/US2016/057390
<141>  2016-10-17

<150>  US 62/242,858
<151>  2015-10-16

<160>  39    

<170>  PatentIn version 3.5

<210>  1
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  1
cgggcgactc agtctatcgg                                                   20


<210>  2
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  2
cagtatcacc aactcaaatc                                                   20


<210>  3
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  3
tgggactggt gacaattgtc                                                   20


<210>  4
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  4
gagtacaggt gtgcatggag                                                   20


<210>  5
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  5
gactgagtcg cccgggta                                                     18


<210>  6
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  6
gcggttgaga atacagggtc                                                   20


<210>  7
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  7
tgccgcgcct gcagcagaaa tg                                                22


<210>  8
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  8
tgttaggact gttgcaagtt tactc                                             25


<210>  9
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  9
gtcatcacca ctccctaatc t                                                 21


<210>  10
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  10
ggaaaagaaa aagacacaga g                                                 21


<210>  11
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  11
agagcacagc aggaggga                                                     18


<210>  12
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  12
ggggtccttg ctcacaga                                                     18


<210>  13
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  13
tgactcaatt aattttagta gc                                                22


<210>  14
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  14
acagtttgac caggggaagt                                                   20


<210>  15
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  15
gctctgccta tcaggatacc t                                                 21


<210>  16
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  16
tgggggactc ttgtaaagtt gc                                                22


<210>  17
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  17
gctactaaaa ttaattgagt c                                                 21


<210>  18
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  18
cctcaaaatt ataaatatgc atc                                               23


<210>  19
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  19
ggctggtaca caaaagcaca                                                   20


<210>  20
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  20
cagacctgga acaacggaa                                                    19


<210>  21
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  21
caccatattg gactcattct                                                   20


<210>  22
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  22
tgaccacagt ccatgccatc                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic primer

<400>  23
gacggacaca ttgggggtag                                                   20


<210>  24
<211>  55
<212>  PRT
<213>  Mus musculus

<400>  24

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Asn Val Trp Gly Lys Ile Phe His Tyr Thr 
            20                  25                  30          


Lys Glu Gly Ala Ala Ala Arg Gln Leu Glu His Ile Ser Ala Asp Thr 
        35                  40                  45              


Phe Gly Met Ser Tyr Asn Gly 
    50                  55  


<210>  25
<211>  55
<212>  PRT
<213>  Mus musculus

<400>  25

Thr Gln Glu Glu Lys Asp Asp Ile Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Asn Val Trp Gly Lys Ile Phe His Tyr Thr 
            20                  25                  30          


Lys Glu Gly Ala Val Ala Arg Gln Leu Glu His Ile Ser Ala Asp Thr 
        35                  40                  45              


Phe Gly Met Ser Tyr Asn Gly 
    50                  55  


<210>  26
<211>  55
<212>  PRT
<213>  Mus musculus

<400>  26

Thr Gln Glu Glu Lys Asp Asp Ile Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Asn Val Trp Gly Lys Ile Phe His Tyr Thr 
            20                  25                  30          


Lys Glu Gly Ala Val Ala Arg Gln Leu Glu His Ile Ser Ala Asp Thr 
        35                  40                  45              


Phe Gly Met Ser Tyr Asn Gly 
    50                  55  


<210>  27
<211>  50
<212>  PRT
<213>  Mus musculus

<400>  27

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Ile His Trp Lys Val Phe Tyr Asn Ser Arg 
            20                  25                  30          


Glu Glu Ala Lys Arg His Ile Ile Glu His Ile Lys Ala Leu Pro Leu 
        35                  40                  45              


Ala Phe 
    50  


<210>  28
<211>  50
<212>  PRT
<213>  Mus musculus

<400>  28

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Ile His Trp Lys Val Phe Tyr Asn Gln Arg 
            20                  25                  30          


Glu Glu Ala Lys Arg His Ile Ile Glu His Ile Lys Ala Leu Pro Leu 
        35                  40                  45              


Ala Phe 
    50  


<210>  29
<211>  55
<212>  PRT
<213>  Mus musculus

<400>  29

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Asn Val Trp Gly Lys Ile Phe His Tyr Thr 
            20                  25                  30          


Lys Glu Gly Ala Val Ala Arg Gln Leu Glu His Ile Ser Ala Asp Thr 
        35                  40                  45              


Phe Gly Met Ser Tyr Asn Gly 
    50                  55  


<210>  30
<211>  50
<212>  PRT
<213>  Mus musculus

<400>  30

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Ile His Trp Lys Val Phe Tyr Asn Ser Arg 
            20                  25                  30          


Glu Glu Ala Lys Arg His Ile Ile Glu His Ile Lys Ala Leu Pro Leu 
        35                  40                  45              


Ala Phe 
    50  


<210>  31
<211>  50
<212>  PRT
<213>  Mus musculus

<400>  31

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Ile His Trp Lys Val Phe Tyr Asn Ser Arg 
            20                  25                  30          


Glu Glu Ala Lys Arg His Ile Ile Glu His Ile Lys Ala Leu Pro Leu 
        35                  40                  45              


Ala Phe 
    50  


<210>  32
<211>  55
<212>  PRT
<213>  Mus musculus

<400>  32

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Asn Val Trp Gly Lys Ile Phe His Tyr Thr 
            20                  25                  30          


Lys Glu Gly Ala Val Ala Arg Gln Leu Glu His Ile Ser Ala Asp Thr 
        35                  40                  45              


Phe Gly Met Ser Tyr Asn Gly 
    50                  55  


<210>  33
<211>  50
<212>  PRT
<213>  Mus musculus

<400>  33

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Ile His Trp Lys Val Phe Tyr Asn Ser Arg 
            20                  25                  30          


Glu Glu Ala Lys Arg His Ile Ile Glu His Ile Lys Ala Leu Pro Leu 
        35                  40                  45              


Ala Phe 
    50  


<210>  34
<211>  60
<212>  PRT
<213>  Mus musculus

<400>  34

Thr Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Asn Phe Trp Gly Arg Phe Phe Asp Tyr Thr 
            20                  25                  30          


Glu Glu Gly Ala Ile Ala Lys Ile Leu His Asn Lys Lys Tyr Thr Phe 
        35                  40                  45              


Ala Gly Lys Leu Gly Met Asp Gly Leu His Phe Thr 
    50                  55                  60  


<210>  35
<211>  55
<212>  PRT
<213>  Mus musculus

<400>  35

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Asn Val Trp Gly Lys Ile Phe His Tyr Thr 
            20                  25                  30          


Lys Glu Gly Ala Val Ala Arg Gln Leu Glu His Ile Ser Ala Asp Thr 
        35                  40                  45              


Phe Gly Met Ser Tyr Asn Gly 
    50                  55  


<210>  36
<211>  50
<212>  PRT
<213>  Mus musculus

<400>  36

Ser Gln Glu Glu Lys Asp Asp Met Lys Gln Gln Val His Asp Tyr Ile 
1               5                   10                  15      


Tyr Leu Gly Thr Gly Met Ile His Trp Lys Val Phe Tyr Asn Ser Arg 
            20                  25                  30          


Glu Glu Ala Lys Arg His Ile Ile Glu His Ile Lys Ala Leu Pro Leu 
        35                  40                  45              


Ala Phe 
    50  


<210>  37
<211>  10
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  illustrative direct repeat sequence

<400>  37
ggccttaggc                                                              10


<210>  38
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  illustrative inverse repeat sequence

<400>  38
aaacagccac c                                                            11


<210>  39
<211>  11
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  illustrative inverse repeat sequence

<400>  39
ggtggctgtt t                                                            11


