                         SEQUENCE LISTING

<110>  UNIVERSITY OF MASSACHUSETTS
       PEDERSON, Thoru
       MA, Hanhui
       LI-CHUNG, Tu
       NASERI, Ardalan
       XU, Zuoshang
 
<120>  Detection of Gene Loci with CRISPR Arrayed Repeats and/or 
       Polychromatic Singl Guid Ribonucleic Acids

<130>  UMASS-W-18416

<140>  PCT/US16/49945
<141>  2016-09-01

<150>  US 62/277,216
<151>  2016-01-11

<150>  US 62/213,351
<151>  2015-09-02

<150>  US 62/276,568
<151>  2016-01-08

<160>  53    

<170>  PatentIn version 3.5

<210>  1
<211>  6
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  1
ggggcc                                                                   6


<210>  2
<211>  6
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  2
ccccgg                                                                   6


<210>  3
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  3
gccggggccg gggccggggc                                                   20


<210>  4
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  4
gggggccccg gccccggccc                                                   20


<210>  5
<211>  8
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(4)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (7)..(8)
<223>  n is a, c, g, or t

<400>  5
nnnngann                                                                 8


<210>  6
<211>  8
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(4)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (8)..(8)
<223>  n is a, c, g, or t

<400>  6
nnnngttn                                                                 8


<210>  7
<211>  8
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (1)..(4)
<223>  n is a, c, g, or t

<400>  7
nnnngatt                                                                 8


<210>  8
<211>  6
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  8
ttaggg                                                                   6


<210>  9
<211>  5
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  9
attcc                                                                    5


<210>  10
<211>  8
<212>  DNA
<213>  Neisseria meningitidis


<220>
<221>  misc_feature
<222>  (1)..(4)
<223>  n is a, c, g, or t

<400>  10
nnnngatt                                                                 8


<210>  11
<211>  8
<212>  DNA
<213>  Neisseria meningitidis


<220>
<221>  misc_feature
<222>  (1)..(4)
<223>  n is a, c, g, or t

<400>  11
nnnnggtt                                                                 8


<210>  12
<211>  7
<212>  DNA
<213>  Neisseria meningitidis


<220>
<221>  misc_feature
<222>  (1)..(3)
<223>  n is a, c, g, or t

<400>  12
nnngctt                                                                  7


<210>  13
<211>  7
<212>  DNA
<213>  Streptococcus thermophilus


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  n is a, c, g, or t

<400>  13
nnagaaw                                                                  7


<210>  14
<211>  7
<212>  DNA
<213>  Streptococcus thermophilus


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  n is a, c, g, or t

<400>  14
nnggaaw                                                                  7


<210>  15
<211>  7
<212>  DNA
<213>  Streptococcus thermophilus


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  n is a, c, g, or t

<400>  15
nnaggaw                                                                  7


<210>  16
<211>  7
<212>  DNA
<213>  Streptococcus thermophilus


<220>
<221>  misc_feature
<222>  (1)..(2)
<223>  n is a, c, g, or t

<400>  16
nnagggw                                                                  7


<210>  17
<211>  22
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  17
gtggcgtgac ctgtggatgc tg                                                22


<210>  18
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  18
ggttagggtt agggttaggg                                                   20


<210>  19
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  19
agggttaggg ttagggttag                                                   20


<210>  20
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  20
gttagggtta gggttagggt                                                   20


<210>  21
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  21
ttagggttag ggttagggtt                                                   20


<210>  22
<211>  17
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  22
gggttagggt tagggtt                                                      17


<210>  23
<211>  13
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  23
tagggttagg gtt                                                          13


<210>  24
<211>  9
<212>  DNA
<213>  Artificial sequence Synthetic

<220>
<223>  Synthetic

<400>  24
gttagggtt                                                                9


<210>  25
<211>  6
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  25
agggtt                                                                   6


<210>  26
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  26
tggaatggaa tggaatggaa                                                   20


<210>  27
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  27
tgtctgtgag gaagctcccc                                                   20


<210>  28
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  28
taagcatgga ccattccttc                                                   20


<210>  29
<211>  18
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  29
gggccaggac ctctaaaa                                                     18


<210>  30
<211>  18
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  30
ccggggaagt gctgagtc                                                     18


<210>  31
<211>  18
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  31
tggtgggtgt agacacgg                                                     18


<210>  32
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  32
ggttagggtt agggttaggg ttag                                              24


<210>  33
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  33
gttagggtta gggttagggt tagg                                              24


<210>  34
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  34
atggaatgga atggaatgga                                                   20


<210>  35
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  35
tagggttagg gttagggtta gggt                                              24


<210>  36
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  36
ctccatcctg aaggaatggt ccat                                              24


<210>  37
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  37
ggttagggtt agggttaggg                                                   20


<210>  38
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic

<400>  38
atggaatgga atggaatgga                                                   20


<210>  39
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  39
ttagggttag ggttag                                                       16


<210>  40
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  40
ctaaccctaa ccctaaccct aaccctaa                                          28


<210>  41
<211>  99
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  41
guuaggguua ggguuagggu uguuugagag cuagaaaaua gcaagucaaa uaaggcuagu       60

ccguuaucaa cuugaaaaag uggcaccgag ucggugcuu                              99


<210>  42
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  N represents a repeat of GGGGCC with 0 to 100 repeats

<400>  42
ggggccgggg ccggggccgg ggccggggcc nggggccggg gccggggccg gggccggggc       60

c                                                                       61


<210>  43
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic


<220>
<221>  misc_feature
<222>  (31)..(31)
<223>  N is a repeat of GGCCCC with 0 to 100 repeats

<400>  43
ccggggggcc ccggccccgg ccccggcccc nggccccggc cccggccccg gccccggccc       60

c                                                                       61


<210>  44
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  44
ccggggccgg ggccggggcc ggg                                               23


<210>  45
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  45
cccggccccg gccccggccc                                                   20


<210>  46
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  46
tgatatcaca gtgg                                                         14


<210>  47
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  47
tgatatcaga gtgg                                                         14


<210>  48
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  48
tgatatcata gtgg                                                         14


<210>  49
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  49
tgatatcaaa gtgg                                                         14


<210>  50
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  50
tgatatgaca gtgg                                                         14


<210>  51
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  51
tgatattaca gtgg                                                         14


<210>  52
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  52
tgatataaca gtgg                                                         14


<210>  53
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic

<400>  53
gacaucgaug uccuccccau                                                   20


