                         SEQUENCE LISTING

<110>  Yeda Research and Development Co. Ltd.
       SOREK, Rotem
       DAR, Daniel
 
<120>  METHODS OF SCREENING FOR RIBOSWITCHES AND ATTENUATORS

<130>  66840

<150>  US 62/200,662
<151>  2015-08-04

<150>  US 62/289,261
<151>  2016-01-31

<160>  120   

<170>  PatentIn version 3.5

<210>  1
<211>  114
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  1
gttttaactc ttgattacta atcctacctt tcctctttat ccacaaagtg tggataagtt       60

gtggattgat ttcacacagc ttgtgtagaa ggttgtccac aagttgtgaa attt            114


<210>  2
<211>  72
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  2
ggataaatat aaataatatt catatatgat ttgcacttat cgccgctctc gtcctttggg       60

cgggagcttt tt                                                           72


<210>  3
<211>  160
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  3
cgttgtaact ttttataggt ccattcatga caaaggaggg cggagtttcc agaaaatccg       60

gtgaaaaccg tgagaaaaga actgattttt ttggttatat gatgctaatc cattcaaaaa      120

gatccatttc tcaaagacaa aagactcccc tttcctaaac                            160


<210>  4
<211>  216
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  4
gcctgcctgt tcagggcatg gaattaagac tcggaatcgg agcttggcat tgccttgcac       60

agtggtgaac acaacaggtg acaatgcttg tcatcagtac ggaaactgaa aagaacaaac      120

agtcggagca aacgctcatc atcggtttaa ccaaacattt ggaagcaaca aatgctataa      180

tacaaacagt gcctaatgtt gggcactgtt tatttt                                216


<210>  5
<211>  93
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  5
atattatcgg agtctgggag cgagttggcc tgactccggc aaacggcctt gccaaagagg       60

gcggagcgag cttcatatct gtcctcgttt ttt                                    93


<210>  6
<211>  95
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  6
ggtttccaaa tggttgtaat aaaaatgata tggtgcgaaa cataaatatt ccggcttgcc       60

gcggtgtatt tattgttgtg tgatgccttg atttt                                  95


<210>  7
<211>  130
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  7
acaatttata atcaaacttt gacttttgga ggtggtatga tggggccctc tgcttaggca       60

acaatacacc gcgtacctca atgttaagga aaaatgatta tatcaggagg tgactcctta      120

tcctttgttg                                                             130


<210>  8
<211>  98
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  8
ggtgttaaat acacacgctt aacgatttat gcagagggtg ctgcaggcgg cagttctgta       60

caaaaatgac ctaagcggag gaaaaaaacc attatatt                               98


<210>  9
<211>  222
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  9
gaacagcttt ttttgaatac cttgtccagc tgggtttcgg ccgttcgatt tgcgaaggtc       60

tgctgcttta tatataataa acaaacatac gttctcatag tgtaaaaaca gcactagccg      120

atgttttgag aagaactgat tcgttagctc tatgttgcga ttgcaaacat attggttata      180

atgaggagtc caaggcagta ctggctcgag gcgaggttta ta                         222


<210>  10
<211>  93
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  10
tgaatttcaa ctggcgataa aggactatat tagatggaag agaaatgatt tgtcattgct       60

acatactcat ttatttagtt ctttgctcca gtt                                    93


<210>  11
<211>  90
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  11
tggagatatt cacaggcgaa atgtttaccc gccttgaata tgagcacgat acccgcttct       60

tcaggctcct aaagccaggg cgggttttct                                        90


<210>  12
<211>  150
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  12
ataaaatttt accatattta aggagggagt tgaatttttt tccttaggta atgtgaattc       60

attaaagcat aaaatatcca gttagtccaa gacggaaagc ctgcggacac tgaacttaca      120

gtattacgct gtatgtttgg tgtccgtttt                                       150


<210>  13
<211>  157
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  13
agtgttgatg gatttgtaat aggatcttgt tatgagtcta tcgttttata aaaatcaagg       60

attggtctgt tagtaagact tgctagtgaa ctattccgcc atgtgtgttt acaccttctt      120

agaattaagg gcaggtgtat ctatacatgg ctttttt                               157


<210>  14
<211>  144
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  14
gtgtgaaata ttgcagcctt tttgttcagc ttctatgttt tcattttgtt ccttatcaat       60

aaggtgtatc gtgtaactct ctgctgctgg agcgaggata catgaaaaca aaatgtgcat      120

ggtcgaatag agcagacggt tttt                                             144


<210>  15
<211>  111
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  15
gattatatgc tcattcattc acataattat aataaaataa tatcatttcc cctgaaaggg       60

agaatattag aatgaaagct aatggtatgc aaaatctatt agcttctttt g               111


<210>  16
<211>  82
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  16
taacgaatgg tcttagagag cggatcaaaa cgcgaatgat atacgttcag caaagcttgg       60

tcgttcagca ccaggctttc tt                                                82


<210>  17
<211>  131
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  17
cggggaaacc catacagcag aaagggagtt tttttcatga ttatccaatt cattcgttat       60

agataatgac aggtgtagac aaactgccag acctggccaa tttttgagat aggcctaggt      120

ttatttgtct a                                                           131


<210>  18
<211>  89
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  18
agtaaaattt agagatgata taaaaacatt cggtgcaaag catgttgcag cgatgaacaa       60

aagagcagtc gtttatgctg ctcttttct                                         89


<210>  19
<211>  124
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  19
atatcccaaa gtttaagcca cctatagttt ctactgcaaa acgtataatt tagttcccac       60

atatactaaa aaacgtgtcc ttaactctct ctgtcagatt agttgtaggt ggcttaaact      120

tagt                                                                   124


<210>  20
<211>  103
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  20
tataaacaaa tatccttatt caggaatgtt accaacttgg gcataaccta gataaatgga       60

gaactggctt tttgggctag ttttcaattt atctgggttt tta                        103


<210>  21
<211>  185
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  21
atcccataga gattgtcatt tgaaataagc taattgaaaa taaattactt cccccataga       60

aatattctta attgcttatt tcaaataaac actcctttaa gatagttgta gcacagaatt      120

tcccagattc tgtgctataa ttatgtagaa atagagatgc tctgaaaatg aggctctctt      180

ttttt                                                                  185


<210>  22
<211>  83
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  22
tagagcgcta gttttttata cttaatcatg tgataattgt cacttagtaa gcgtgaagcc       60

aaattgcttt gcgttttttt cgc                                               83


<210>  23
<211>  207
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  23
atcaaatgaa aaggagtgtt atcttaagcc aatgaaattc taatcctgta ttatatgaaa       60

aaatgaagaa agctatccac ttctcggata gaaactattt tttcggacgg gattcgtatg      120

ttcatttcgc atgataactc ttgctatagg cctttttggc gtagccccgc ggattcctct      180

ctgaaaatat tcaggaggtt atttttt                                          207


<210>  24
<211>  122
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  24
tgtgttgaaa tgaatagcaa ttttttatgg tgagacaatt aatgacaaag atgtcagtta       60

atgctttttt tataaaaaga ctccagagtg cctatttaga ggtgttcttg ggtctttttt      120

tg                                                                     122


<210>  25
<211>  93
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  25
tggaaaacaa tattgcgcag tctgtccagt tataattcgg atagactggc attttgtctt       60

cttgtgggaa aatgcggttg atttgtgttt cat                                    93


<210>  26
<211>  125
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  26
ttgagtaaaa tgaatgagtg tgttgtttac ccccagattt aattctgtgg tatatcgcgt       60

aaccggcggc tgctatggtg atggtatatg aaggtaaact gccctgattt ggttttacgt      120

cacgt                                                                  125


<210>  27
<211>  214
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  27
cgttgcataa taaaacaaag gaggaatgga cgatgaataa ttatatgaag acttcaaaca       60

aggcattatt gcgcttaaaa atagaattta tttcaccgga ccatttcgcg agcaagggaa      120

ctctccttta atttggtttt attttataca aagtggtgac aaataaatat attttttcgg      180

gtaataatgg gcagaaatag gtccattatt ttta                                  214


<210>  28
<211>  102
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  28
cgtgaaataa atcacaaaca aataccccct ttatttgatt gtgtgaattt ctccttttga       60

ttgcgctgta agaagccgtg gcattttgct acggcttttt ac                         102


<210>  29
<211>  121
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  29
caataactaa aaatatacat tggctatttc agcatgatta tagaagacaa gtcgcatgat       60

gtggatattt tccaccattt tttctttatg aaaataagga taagatgatg cgttttttct      120

a                                                                      121


<210>  30
<211>  240
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  30
attaatgaaa agaggtgaga tgacatgttt cttttgaatg cgcgaactag tatagctaaa       60

tttttgtata ttgtccgtgc aattttttcc ggtattgcag ttacattggc gaagtctgcc      120

caaaaaactg tataacgaga aaaaatgaga gaagcatgga gtcacgcaat cggtttgtat      180

agtgctaaat tagtattata cttataattg gcgtcgggcg cttgtctgac gcttttttgt      240


<210>  31
<211>  97
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  31
gtggaatgaa atttttgtta ctcattgtac tttagttcat cggaatgctc gctcattctt       60

tcacttgttg agcaataaaa attttattca ggagtac                                97


<210>  32
<211>  176
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  32
tagctagaca aagaagagta cggaacaaaa gtgaaccact ttttaaccgc ctgattttcg       60

gctgtttaaa agtagcccct gcggaattaa gccaaaattt tctaaaaatc gtaaaacaat      120

ttttgaaaat cctttcttaa ttcttggtgc tgaccacttt ttaaccgcct tttctt          176


<210>  33
<211>  98
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  33
atcaataaat agacagatta tttaatcgct gggttgaata attgaaggat tctgattttt       60

gcgtaagcct tgaagcaaaa agaatgagtc cttttttt                               98


<210>  34
<211>  111
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  34
agtaaagtaa ataaaggttt ctcaaaaaca gcgtaatgac ctgggagaga acaacgataa       60

caatgaacca ttcccatgag tgttgcctgg caatatttgt ggggattttt t               111


<210>  35
<211>  107
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  35
attgccggaa gatgacgaga aaaattgaat cgtagtaaat aaaatagatc tatttctatg       60

tttaataata aatgtgaagc tgaacgacca cgtttggctt ttctaat                    107


<210>  36
<211>  110
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  36
aggttaagca atctcttttt ttggaacaag agaaactttt ggaatcattt cctataaatc       60

atgaagagat tatgacaaac gttcttctaa tccaagaacg tcttttgtcc                 110


<210>  37
<211>  76
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  37
gggcaccttt aagaaggtca gaagtttgaa cgaacttaca agctccctat tcgtaatgga       60

tagggagctt ttctat                                                       76


<210>  38
<211>  171
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  38
aattaaacga ggaggtataa ttgtatgttg gcatctatca gaatttggat tgactttttg       60

acaaaataaa ttgaataaat cttatcaaaa agtctgaaat taaaattcat gggtggcgtg      120

tgtactttta tacgaaacta caaggatagc gattaggctg tccttttttg c               171


<210>  39
<211>  143
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  39
gtattgaata aagaatggtt gggcgaaagc ttcaaggatt cagttcttca aggggtgaga       60

agaacaattt ttgagtttgc gcctttttgc atacctaaaa caaaagggct gagcgtatct      120

ctatttcgct agtccttttt ctt                                              143


<210>  40
<211>  86
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  40
tgaaagctga aataaaaatg ttcagtcgtt gatctgaaga attaagcgtt tgggacataa       60

gtcattgcgg cttatgtccc aaacgc                                            86


<210>  41
<211>  144
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  41
taataaaaga cgaaaagagg gattcgtgcg ttgaaaattt aagttaattt tttagagaaa       60

ctgtataact ttgcctgaat ataacgggtg gagtgtgcgg attttcggaa attagcttaa      120

agaattcaac cacgggtctt tttg                                             144


<210>  42
<211>  233
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  42
cataaatgat tgatgagaaa gacaactgaa cttgcccgcg atctattaga gaggaaaatc       60

ttggctgaaa attttccaga ttggcacaag ggatgaccac tttcgaaacc tttgttgaaa      120

caaaggcggt cgcaccgtta acacgctaga ggaacacaga ttatttgtgt tcaaaattag      180

gtggaaccac gatattttcg tcctagtatt cgttagaata ctaggacttt ttg             233


<210>  43
<211>  118
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  43
gaaaagtacc tttaagatag tccgagaggc taacaaggca aagttctgta aaattctgta       60

tttttgtata gtgaatgata cgagatgtct tgcccttttt ttgtgtgtaa ggcttttt        118


<210>  44
<211>  98
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  44
caaatgaaac atgtctatac aagttcacaa ggaggcgcca aacatgacca ttttagaatt       60

aacattcgca acgaaccaac taacgacgac ttttttta                               98


<210>  45
<211>  114
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  45
guuuuaacuc uugauuacua auccuaccuu uccucuuuau ccacaaagug uggauaaguu       60

guggauugau uucacacagc uuguguagaa gguuguccac aaguugugaa auuu            114


<210>  46
<211>  72
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  46
ggauaaauau aaauaauauu cauauaugau uugcacuuau cgccgcucuc guccuuuggg       60

cgggagcuuu uu                                                           72


<210>  47
<211>  160
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  47
cguuguaacu uuuuauaggu ccauucauga caaaggaggg cggaguuucc agaaaauccg       60

gugaaaaccg ugagaaaaga acugauuuuu uugguuauau gaugcuaauc cauucaaaaa      120

gauccauuuc ucaaagacaa aagacucccc uuuccuaaac                            160


<210>  48
<211>  216
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  48
gccugccugu ucagggcaug gaauuaagac ucggaaucgg agcuuggcau ugccuugcac       60

aguggugaac acaacaggug acaaugcuug ucaucaguac ggaaacugaa aagaacaaac      120

agucggagca aacgcucauc aucgguuuaa ccaaacauuu ggaagcaaca aaugcuauaa      180

uacaaacagu gccuaauguu gggcacuguu uauuuu                                216


<210>  49
<211>  93
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  49
auauuaucgg agucugggag cgaguuggcc ugacuccggc aaacggccuu gccaaagagg       60

gcggagcgag cuucauaucu guccucguuu uuu                                    93


<210>  50
<211>  95
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  50
gguuuccaaa ugguuguaau aaaaaugaua uggugcgaaa cauaaauauu ccggcuugcc       60

gcgguguauu uauuguugug ugaugccuug auuuu                                  95


<210>  51
<211>  130
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  51
acaauuuaua aucaaacuuu gacuuuugga ggugguauga uggggcccuc ugcuuaggca       60

acaauacacc gcguaccuca auguuaagga aaaaugauua uaucaggagg ugacuccuua      120

uccuuuguug                                                             130


<210>  52
<211>  98
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  52
gguguuaaau acacacgcuu aacgauuuau gcagagggug cugcaggcgg caguucugua       60

caaaaaugac cuaagcggag gaaaaaaacc auuauauu                               98


<210>  53
<211>  222
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  53
gaacagcuuu uuuugaauac cuuguccagc uggguuucgg ccguucgauu ugcgaagguc       60

ugcugcuuua uauauaauaa acaaacauac guucucauag uguaaaaaca gcacuagccg      120

auguuuugag aagaacugau ucguuagcuc uauguugcga uugcaaacau auugguuaua      180

augaggaguc caaggcagua cuggcucgag gcgagguuua ua                         222


<210>  54
<211>  93
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  54
ugaauuucaa cuggcgauaa aggacuauau uagauggaag agaaaugauu ugucauugcu       60

acauacucau uuauuuaguu cuuugcucca guu                                    93


<210>  55
<211>  90
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  55
uggagauauu cacaggcgaa auguuuaccc gccuugaaua ugagcacgau acccgcuucu       60

ucaggcuccu aaagccaggg cggguuuucu                                        90


<210>  56
<211>  150
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  56
auaaaauuuu accauauuua aggagggagu ugaauuuuuu uccuuaggua augugaauuc       60

auuaaagcau aaaauaucca guuaguccaa gacggaaagc cugcggacac ugaacuuaca      120

guauuacgcu guauguuugg uguccguuuu                                       150


<210>  57
<211>  157
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  57
aguguugaug gauuuguaau aggaucuugu uaugagucua ucguuuuaua aaaaucaagg       60

auuggucugu uaguaagacu ugcuagugaa cuauuccgcc auguguguuu acaccuucuu      120

agaauuaagg gcagguguau cuauacaugg cuuuuuu                               157


<210>  58
<211>  144
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  58
gugugaaaua uugcagccuu uuuguucagc uucuauguuu ucauuuuguu ccuuaucaau       60

aagguguauc guguaacucu cugcugcugg agcgaggaua caugaaaaca aaaugugcau      120

ggucgaauag agcagacggu uuuu                                             144


<210>  59
<211>  111
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  59
gauuauaugc ucauucauuc acauaauuau aauaaaauaa uaucauuucc ccugaaaggg       60

agaauauuag aaugaaagcu aaugguaugc aaaaucuauu agcuucuuuu g               111


<210>  60
<211>  82
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  60
uaacgaaugg ucuuagagag cggaucaaaa cgcgaaugau auacguucag caaagcuugg       60

ucguucagca ccaggcuuuc uu                                                82


<210>  61
<211>  131
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  61
cggggaaacc cauacagcag aaagggaguu uuuuucauga uuauccaauu cauucguuau       60

agauaaugac agguguagac aaacugccag accuggccaa uuuuugagau aggccuaggu      120

uuauuugucu a                                                           131


<210>  62
<211>  89
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  62
aguaaaauuu agagaugaua uaaaaacauu cggugcaaag cauguugcag cgaugaacaa       60

aagagcaguc guuuaugcug cucuuuucu                                         89


<210>  63
<211>  124
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  63
auaucccaaa guuuaagcca ccuauaguuu cuacugcaaa acguauaauu uaguucccac       60

auauacuaaa aaacgugucc uuaacucucu cugucagauu aguuguaggu ggcuuaaacu      120

uagu                                                                   124


<210>  64
<211>  103
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  64
uauaaacaaa uauccuuauu caggaauguu accaacuugg gcauaaccua gauaaaugga       60

gaacuggcuu uuugggcuag uuuucaauuu aucuggguuu uua                        103


<210>  65
<211>  185
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  65
aucccauaga gauugucauu ugaaauaagc uaauugaaaa uaaauuacuu cccccauaga       60

aauauucuua auugcuuauu ucaaauaaac acuccuuuaa gauaguugua gcacagaauu      120

ucccagauuc ugugcuauaa uuauguagaa auagagaugc ucugaaaaug aggcucucuu      180

uuuuu                                                                  185


<210>  66
<211>  83
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  66
uagagcgcua guuuuuuaua cuuaaucaug ugauaauugu cacuuaguaa gcgugaagcc       60

aaauugcuuu gcguuuuuuu cgc                                               83


<210>  67
<211>  207
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  67
aucaaaugaa aaggaguguu aucuuaagcc aaugaaauuc uaauccugua uuauaugaaa       60

aaaugaagaa agcuauccac uucucggaua gaaacuauuu uuucggacgg gauucguaug      120

uucauuucgc augauaacuc uugcuauagg ccuuuuuggc guagccccgc ggauuccucu      180

cugaaaauau ucaggagguu auuuuuu                                          207


<210>  68
<211>  122
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  68
uguguugaaa ugaauagcaa uuuuuuaugg ugagacaauu aaugacaaag augucaguua       60

augcuuuuuu uauaaaaaga cuccagagug ccuauuuaga gguguucuug ggucuuuuuu      120

ug                                                                     122


<210>  69
<211>  93
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  69
uggaaaacaa uauugcgcag ucuguccagu uauaauucgg auagacuggc auuuugucuu       60

cuugugggaa aaugcgguug auuuguguuu cau                                    93


<210>  70
<211>  125
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  70
uugaguaaaa ugaaugagug uguuguuuac ccccagauuu aauucugugg uauaucgcgu       60

aaccggcggc ugcuauggug augguauaug aagguaaacu gcccugauuu gguuuuacgu      120

cacgu                                                                  125


<210>  71
<211>  214
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  71
cguugcauaa uaaaacaaag gaggaaugga cgaugaauaa uuauaugaag acuucaaaca       60

aggcauuauu gcgcuuaaaa auagaauuua uuucaccgga ccauuucgcg agcaagggaa      120

cucuccuuua auuugguuuu auuuuauaca aaguggugac aaauaaauau auuuuuucgg      180

guaauaaugg gcagaaauag guccauuauu uuua                                  214


<210>  72
<211>  102
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  72
cgugaaauaa aucacaaaca aauacccccu uuauuugauu gugugaauuu cuccuuuuga       60

uugcgcugua agaagccgug gcauuuugcu acggcuuuuu ac                         102


<210>  73
<211>  121
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  73
caauaacuaa aaauauacau uggcuauuuc agcaugauua uagaagacaa gucgcaugau       60

guggauauuu uccaccauuu uuucuuuaug aaaauaagga uaagaugaug cguuuuuucu      120

a                                                                      121


<210>  74
<211>  240
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  74
auuaaugaaa agaggugaga ugacauguuu cuuuugaaug cgcgaacuag uauagcuaaa       60

uuuuuguaua uuguccgugc aauuuuuucc gguauugcag uuacauuggc gaagucugcc      120

caaaaaacug uauaacgaga aaaaaugaga gaagcaugga gucacgcaau cgguuuguau      180

agugcuaaau uaguauuaua cuuauaauug gcgucgggcg cuugucugac gcuuuuuugu      240


<210>  75
<211>  97
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  75
guggaaugaa auuuuuguua cucauuguac uuuaguucau cggaaugcuc gcucauucuu       60

ucacuuguug agcaauaaaa auuuuauuca ggaguac                                97


<210>  76
<211>  176
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  76
uagcuagaca aagaagagua cggaacaaaa gugaaccacu uuuuaaccgc cugauuuucg       60

gcuguuuaaa aguagccccu gcggaauuaa gccaaaauuu ucuaaaaauc guaaaacaau      120

uuuugaaaau ccuuucuuaa uucuuggugc ugaccacuuu uuaaccgccu uuucuu          176


<210>  77
<211>  98
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  77
aucaauaaau agacagauua uuuaaucgcu ggguugaaua auugaaggau ucugauuuuu       60

gcguaagccu ugaagcaaaa agaaugaguc cuuuuuuu                               98


<210>  78
<211>  111
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  78
aguaaaguaa auaaagguuu cucaaaaaca gcguaaugac cugggagaga acaacgauaa       60

caaugaacca uucccaugag uguugccugg caauauuugu ggggauuuuu u               111


<210>  79
<211>  107
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  79
auugccggaa gaugacgaga aaaauugaau cguaguaaau aaaauagauc uauuucuaug       60

uuuaauaaua aaugugaagc ugaacgacca cguuuggcuu uucuaau                    107


<210>  80
<211>  110
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  80
agguuaagca aucucuuuuu uuggaacaag agaaacuuuu ggaaucauuu ccuauaaauc       60

augaagagau uaugacaaac guucuucuaa uccaagaacg ucuuuugucc                 110


<210>  81
<211>  76
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  81
gggcaccuuu aagaagguca gaaguuugaa cgaacuuaca agcucccuau ucguaaugga       60

uagggagcuu uucuau                                                       76


<210>  82
<211>  171
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  82
aauuaaacga ggagguauaa uuguauguug gcaucuauca gaauuuggau ugacuuuuug       60

acaaaauaaa uugaauaaau cuuaucaaaa agucugaaau uaaaauucau ggguggcgug      120

uguacuuuua uacgaaacua caaggauagc gauuaggcug uccuuuuuug c               171


<210>  83
<211>  143
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  83
guauugaaua aagaaugguu gggcgaaagc uucaaggauu caguucuuca aggggugaga       60

agaacaauuu uugaguuugc gccuuuuugc auaccuaaaa caaaagggcu gagcguaucu      120

cuauuucgcu aguccuuuuu cuu                                              143


<210>  84
<211>  86
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  84
ugaaagcuga aauaaaaaug uucagucguu gaucugaaga auuaagcguu ugggacauaa       60

gucauugcgg cuuauguccc aaacgc                                            86


<210>  85
<211>  144
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  85
uaauaaaaga cgaaaagagg gauucgugcg uugaaaauuu aaguuaauuu uuuagagaaa       60

cuguauaacu uugccugaau auaacgggug gagugugcgg auuuucggaa auuagcuuaa      120

agaauucaac cacgggucuu uuug                                             144


<210>  86
<211>  233
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  86
cauaaaugau ugaugagaaa gacaacugaa cuugcccgcg aucuauuaga gaggaaaauc       60

uuggcugaaa auuuuccaga uuggcacaag ggaugaccac uuucgaaacc uuuguugaaa      120

caaaggcggu cgcaccguua acacgcuaga ggaacacaga uuauuugugu ucaaaauuag      180

guggaaccac gauauuuucg uccuaguauu cguuagaaua cuaggacuuu uug             233


<210>  87
<211>  118
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  87
gaaaaguacc uuuaagauag uccgagaggc uaacaaggca aaguucugua aaauucugua       60

uuuuuguaua gugaaugaua cgagaugucu ugcccuuuuu uuguguguaa ggcuuuuu        118


<210>  88
<211>  98
<212>  RNA
<213>  Artificial sequence

<220>
<223>  Regulator RNA sequence

<400>  88
caaaugaaac augucuauac aaguucacaa ggaggcgcca aacaugacca uuuuagaauu       60

aacauucgca acgaaccaac uaacgacgac uuuuuuua                               98


<210>  89
<211>  217
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  89
gtaagaaaaa atgaaagaaa ggagtatgtg tcatgatctt agtaactaaa accaaacaag       60

ccaaacaaca cccactcctt ttagacgtca tgctatagac aagtgccata ctaggcctta      120

tagccaagaa tatagaagat gataagacgc taagctggag tggcaaggat taggactaga      180

ttctgtgcct tgtactgtcc atcttagggt ctttttt                               217


<210>  90
<211>  38
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor


<220>
<221>  misc_feature
<222>  (1)..(18)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' phosphorylated

<220>
<221>  misc_feature
<222>  (3)..(14)
<223>  12mer_index

<220>
<221>  misc_feature
<222>  (38)..(38)
<223>  3' amino blocked

<400>  90
nnnnnnnnnn nnnnnnnnag atcggaagag cgtcgtgt                               38


<210>  91
<211>  30
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  91
tctacactct ttccctacac gacgctcttc                                        30


<210>  92
<211>  36
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  5' phosphorylated

<220>
<221>  misc_feature
<222>  (2)..(2)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (36)..(36)
<223>  3' amino blocked

<400>  92
nnagatcgga agagcacacg tctgaactcc agtcac                                 36


<210>  93
<211>  50
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  93
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct                  50


<210>  94
<211>  49
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor


<220>
<221>  misc_feature
<222>  (25)..(32)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (25)..(32)
<223>  8mer_index

<400>  94
caagcagaag acggcatacg agatnnnnnn nngtgactgg agttcagac                   49


<210>  95
<211>  22
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  95
gtcaatacga ctcactatag gg                                                22


<210>  96
<211>  19
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  96
caaaagctgg taccgggcc                                                    19


<210>  97
<211>  36
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  97
atcaacccgg gatcatttta acgacaaacc gagatg                                 36


<210>  98
<211>  50
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  98
ttttatttag cttgaataaa aagacaacag ccgtgtcgtt tgaaatacac                  50


<210>  99
<211>  50
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  99
gtgtatttca aacgacacgg ctgttgtctt tttattcaag ctaaataaaa                  50


<210>  100
<211>  32
<212>  DNA
<213>  Artificial sequence

<220>
<223>  single stranded  DNA oligonucleotide adaptor

<400>  100
atcaaggatc cccgccagca agcgctatat tt                                     32


<210>  101
<211>  230
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  101
aactatataa aaccacttaa taaatatcgc cgaacctatt gttaaataaa gtctgaattt       60

catactccca agaaataatt acatctgggt ttttaccacc ccttactttt ttctcgggac      120

tttaacaata gttttatgat ctcattatca actatagaca aaatatgtct atcgttatca      180

ttctcgattt atttgggact cataacacta tgtctgagtc ccatttttta                 230


<210>  102
<211>  254
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  102
attccagaaa aggagtaaaa aatatgcggc aaggtattct taaataaaac tataatcaaa       60

tagtgggaac aaagaattat gatagctcct tttgtggggg cttggttttt tgtacccaat      120

ttaagaatac ttttgcctta tcaattttga catattcaaa aaacagcaat cacaaatagg      180

tgtatgctgt atatgtgtat gtccgcaaat tagaatcccc agtggtaaaa gtattttact      240

gctggggatt ttta                                                        254


<210>  103
<211>  107
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  103
gttacaagca gaagccaccg cttctcacct gcgggcacac agcgcgttgg gtcgaatgaa       60

agatgacaga gatttttcaa gggtggcttt gtgccgccct tttctat                    107


<210>  104
<211>  169
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  104
aattaaaact acaaaccaca atctatgatc aatcatctaa aagaaaagac tagtgaccta       60

tatgatagca gacaagtggt ttgtacgaga cgagtctaat ttatttttca tcaaaaaata      120

aataaaagaa ctaacgtgac cagaccttta ttgtctgttc ccgtttttt                  169


<210>  105
<211>  89
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  105
gtaacctcat tgatttacct caaacctgtt gtgagttaag ttaatgaagt tgtaaccacg       60

ctgtttgctg agcttgactc cgggcagtg                                         89


<210>  106
<211>  143
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  106
aacaaagaga aaggagaaaa ccatcatgaa caaagtagat gttttgatga cacaattgaa       60

tacacagctt ctccaatctc agttgagttc tatgtaaaaa ttgaatgaac ccaagatgga      120

ggagtctgtc ttgggttttt tgt                                              143


<210>  107
<211>  271
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  107
agaatgattt cggaggtaca cggagacatg aaaaattaag tctatttttt aaaggaaact       60

ttatttagta gattttgtca tgtttctgca tatccgcggg actttcgttt ttttgtgctt      120

tcaagctcct atagcttata tttagattga tcctgtcact cctatgacag tgcaaattgt      180

aagtctacaa acgaatgccc ctatttagac actcctgtgt cttctttgtg caatctcaac      240

agctctgcta aataaagcag ggctgtattt t                                     271


<210>  108
<211>  164
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  108
aataacattt caaaaggagt cagtcaaaca tgaagtcaac tcaattttca gactttgctt       60

tgttgttgcg ttactcgggc tagtgcgaaa gcattagtcc tgtttggctt accaagcggg      120

agtaaatcaa catctcgctt ggcttccagc gagatgtttt tatt                       164


<210>  109
<211>  157
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  109
tattttttat gccttgacat tcctcatctc taacgatata atgtttacaa tttaaccttt       60

aatcaagtcc agtgaggctg caaggtagga aaaacggtat aaggggcaat ttgactgcct      120

cgttttttgc aaaaccttgc tgtggcgagg ttttttc                               157


<210>  110
<211>  272
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  110
agaactattt cggaggtaca cggagacatg aaaaattaag tctatttttt aaaggaaact       60

ttatttagta gattttgtca tgtttctgca tatccgcggg atgttcattt tttgtgcttt      120

ctagcttcta tttgcttatc tttagatgaa tcctgtcgct cctatgacag tgtaagctgg      180

aagcctatag acgaatattc ctacttagac actcctgtgt ctgctttgtg caactaaaaa      240

cagctctgct aaataaagca gggctgtatt tt                                    272


<210>  111
<211>  315
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  111
tttaaaaaat tctgaaatat tcttgacagg tgatgaaaaa ggtggtaaga taggaaacat       60

caaaaaagaa agcagaaaaa gaaatgaata agagacaagc tgtaactatg aatcaaaact      120

tttactttag ctactttaga tagtgtttgt agacatgtca ccatggatgc aaacagttca      180

agcaatttgt ttgtatctat gtggctaaga tttttgattg tggtccatat agatgaatat      240

ctaaatggac tagctaagtt gtaacttgtt agattatttc aagcatccgt ttagatagta      300

tctaggcggt ttttt                                                       315


<210>  112
<211>  270
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  112
actaatactc ggaggtaagg gagacatgaa caactaatct atcaaataaa gaacctttat       60

ttagtagatc ttgtttttgt ctcttttggt gtgctctttt tgtactagat tttctagtac      120

tttatcatct atgaaaatca aaaaactaga aagctatgct cctcttgggt tgggttaggc      180

aactccaagt tagtttgacg agtttttcaa cgaggataat agagttttga cagtgacttt      240

gggctctact agataaagta gagctttttg                                       270


<210>  113
<211>  258
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  113
caaataatca ggaggtaggg tgcattgaaa aattaatttt cttcttgttt gattggactt       60

tttgacgaga ctgattgagt tggcttcgac cgactggatt cagttacctt gtctcgtttt      120

gaagaaaatc gccaaagttg tgagacttta tctagaagaa aattgattgc atgcacatta      180

tcataaatta taagctagat actagtcttt tttgtgcggt caaacaagtt ctactggata      240

aggtaggact tgtttttt                                                    258


<210>  114
<211>  271
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  114
agtaatagtg ccacctaacc cacagatcaa gacgtaactg tatgaaataa acaatgttta       60

tttactacat gttctttttc tgtgtttttc tctcgtgttt ttatagtaca ttttgtacta      120

tgttctggtg attcaaattg aaaaaagtac aaacgtattg tggtgttccc ttcccttacc      180

gaagtggaac gtactttcag cactttttga agcaccataa tacacttttc agactcagtt      240

tcccgtgtag tacctaaact acacgttttt c                                     271


<210>  115
<211>  271
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  115
aagaatattt cggaggtaca cggagacatg aaaaattaag tctatttttt aaaggaaact       60

ttatttagta gattttgtca tgtttctgca tatccgcagg atgttcgttt tcgatgcttt      120

ctaacttcta tttgcttatc tttagattaa tcctgtcgct cctatgacag tgtaagctgg      180

aagcctatga acgattaatc ctacttgaac actcctatgt ctgatttgtg caatttcaac      240

agctctgcta aataaagcag ggctgtattt t                                     271


<210>  116
<211>  247
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  116
aagaagaaac acaaaccaca aaaggatgat caagaaacta catcttttca tcagagaatt       60

aaatagagga gttgtggaat gtgacttcac ttggatctaa agaatcaatc aaagggaaca      120

tccaccactg tctgttccct tttttctatc gatttttcgg tcggttaagt caattcctca      180

taccgatgac aaccgggaac tctccagtca cgagctagtg acgtggtagt tccctttttt      240

gtctcgt                                                                247


<210>  117
<211>  179
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  117
caggctgtcc cgcaaacggg ccaagcgaac gccacaaatg ggaggtccat agggcggtgt       60

gcagacacac catcggcggg atgaccccgc ggcgcgaccc catgccctag cagcctgaag      120

agggctctct cttcaggtat ccaacggtgg ctcgcgctgc gctaagccac cgttttgct       179


<210>  118
<211>  202
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  118
aaaagaagac taatagctat atgcaacaag tccagtctat gatgattatg cgaatgtatg       60

ctgacacgat gatgtggctc agcatgatga cgcatatcca taggcgaagt agcttgttgt      120

atacctgtta gtatatagca tacccataca aagagtttgt aagaagcgct tctcctggat      180

ttcctcgaga agcgcttctt cg                                               202


<210>  119
<211>  132
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  119
atcaaatata tgaacttaga tattaggata caattaggtt tcgagaacct aagcgttgct       60

ccgctattac gttcatctac gattagtgta tgatagaaga aaacgggcca cgcagacgtt      120

gcccgttttt ct                                                          132


<210>  120
<211>  181
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Regulator DNA Sequence

<400>  120
gattttaaga attatcgttt aactaaatac aaaaatacgc acgaagaaat gaaatatatc       60

aagttacata tcgcatctgt attacctttc cacaaggtaa cgcttcgtgg cgtatccgct      120

tgattagaac aatagtataa tatatagaag agcccgaagc accccgcttc gggctttttg      180

t                                                                      181


