                         SEQUENCE LISTING

<110>  Curegenix Corporation
 
<120>  Tumor Biomarkers and Use Thereof

<130>  1402518-00035

<150>  US 62/166,305
<151>  2015-05-26

<160>  72    

<170>  PatentIn version 3.5

<210>  1
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Rspo2 forward primer

<400>  1
agaggccgtt gctttgatga                                                   20


<210>  2
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Rspo2 reverse primer

<400>  2
tccccattcg ctccaatgac                                                   20


<210>  3
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GAPDH forward primer

<400>  3
gaaggtgaag gtcggagt                                                     18


<210>  4
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  GAPDH reverse primer

<400>  4
gaagatggtg atgggatttc                                                   20


<210>  5
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Rspo2 exon 2 gene specific primer

<400>  5
gattacgcca agcttcgtct ccatcggttg ccttggcagt ggc                         43


<210>  6
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Rspo2 exon3 gene specific primer

<400>  6
gattacgcca agcttgcagg cactctccat actggcgcat ccc                         43


<210>  7
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Rspo2 exon 3 nested primer

<400>  7
gattacgcca agcttgggct cggtgtccat agtacccgga tggg                        44


<210>  8
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Rspo3 exon 3 gene specific primer

<400>  8
gattacgcca agcttggttg ttggcttcca acccttctgg gc                          42


<210>  9
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Rspo3 exon3 nested gene specific primer

<400>  9
gattacgcca agcttggacc cgtgtttcag tccctctttt gaagcc                      46


<210>  10
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_001101.2:1010_T001 capture probe

<400>  10
gatcttgatc ttcattgtgc tgggtgccag ggcagtgatc tccttctgca cctcaagacc       60

taagcgacag cgtgaccttg tttca                                             85


<210>  11
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_002046.3:972_T002 capture probe

<400>  11
aagtggtcgt tgagggcaat gccagcccca gcgtcaaagc atcctcttct tttcttggtg       60

ttgagaagat gctc                                                         74


<210>  12
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_004655.3:527_T003 capture probe

<400>  12
tcggaacagg taagcaccgt cttgatcgcc caataaggag tgtaaggact cacaattctg       60

cgggttagca ggaaggttag ggaac                                             85


<210>  13
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_003667.3:3414_T004 capture probe

<400>  13
gaaaaccctt attttcctaa ttcccccaac aacctcttga gtttgtgggt ctgttgagat       60

tattgagctt catcatgacc agaag                                             85


<210>  14
<211>  79
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:150_T005 capture probe

<400>  14
ttcctgcgct ttctccacgg tcacttcaca gctaagattt ctttcaaaga cgcctatctt       60

ccagtttgat cgggaaact                                                    79


<210>  15
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:641_T006 capture probe

<400>  15
gatgagggca aaggagaaaa ggcgaaactg catctgggcg gtcgggcggg cgaacctaac       60

tcctcgctac attcctattg ttttc                                             85


<210>  16
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:1060_T007 capture probe

<400>  16
ctccaatgac caacttcaca tccttccaca cattccatgg tttcttctaa ccaatttggt       60

tttactcccc tcgattatgc ggagt                                             85


<210>  17
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:2289_T008 capture probe

<400>  17
gttgtgtttc atcaaagtca tcacatctta gactcaaagg cagtttgggc ctttcgggtt       60

atatctatca tttacttgac accct                                             85


<210>  18
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0622.1:69_T009 capture probe

<400>  18
cctcctttac agagagaaat tcaagaagcg gaaagactag atgccgatcc caacagccac       60

tttttttcca aattttgcaa gagcc                                             85


<210>  19
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0623.1:33_T010 capture probe

<400>  19
ccacgaacct tcccaagtga catcgtaaag ctctgagacc ttcgccatct caccgtgtgg       60

acggcaactc agagataacg catat                                             85


<210>  20
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0625.1:77_T011 capture probe

<400>  20
aaggctgtgg tagggaacgg agtctatatt tgtagagaag agtagaatca cctggagttt       60

atgtattgcc aacgagtttg tcttt                                             85


<210>  21
<211>  70
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0624.1:155_T012 capture probe

<400>  21
aactggaggg cagatctggc cgtgtctcca caggtcagat aaggttgtta ttgtggagga       60

tgttactaca                                                              70


<210>  22
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_032784.4:173_T013 capture probe

<400>  22
taaaatatat gtaggtgtta ggcgtatata gacagtgccc gagcagcggg cttccttcct       60

gtgttccagc tacaaactta gaaac                                             85


<210>  23
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_032784.4:634_T014 capture probe

<400>  23
cttctgggca attgtcaagg cactttccaa ggtgtaagta aaatccactt cataaaattg       60

gttttgcctt tcagcaattc aactt                                             85


<210>  24
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_032784.4:1520_T015 capture probe

<400>  24
ctcccggtca aaacaacact gtcctttgaa ggatgtttct cttccctgaa ctggtcaaga       60

cttgcatgag gacccgcaaa ttcct                                             85


<210>  25
<211>  84
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0169.1:1_T016 capture probe

<400>  25
cttggggcat ctcgggtggt agataatgag gctcttgagc actaacatgc tttcgttggg       60

acgcttgaag cgcaagtaga aaac                                              84


<210>  26
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0736.1:0_T017 capture probe

<400>  26
cacaaggata actcagtact tggatgtcat caatggcaat ataaccactt ccagcagacc       60

tgcaatatca aagttataag cgcgt                                             85


<210>  27
<211>  84
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0170.1:1_T018 capture probe

<400>  27
ctctcacaat aagttgagca aaattggaca caccggaacc tcgttctgac ctgccaatgc       60

actcgatctt gtcatttttt tgcg                                              84


<210>  28
<211>  84
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0737.1:0_T019 capture probe

<400>  28
catcttcatc agtttgaata attgtctctt cactctcctt ccttccctcc aaactggaga       60

gagaagtgaa gacgatttaa ccca                                              84


<210>  29
<211>  70
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0524.1:0_T020 capture probe

<400>  29
ctgcggagaa ctggccttgg gccgatccca ggagacgatt gctgcattcc gctcaacgct       60

tgaggaagta                                                              70


<210>  30
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0525.1:0_T021 capture probe

<400>  30
ctgcacattt tgttctggtg attagtggag gtcctgggag ctgaggctgt taaagctgta       60

gcaactcttc cacga                                                        75


<210>  31
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0526.1:0_T022 capture probe

<400>  31
cttttgtagc aatgcgtacg cactgggttt tagtttcctt ctccacactg ctaggacgca       60

aatcacttga agaagtgaaa gcgag                                             85


<210>  32
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0684.1:0_T023 capture probe

<400>  32
ctccttttca cttgtcattt cagtaactgc aggccttttc tgcggagaac ccacgcgatg       60

acgttcgtca agagtcgcat aatct                                             85


<210>  33
<211>  85
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0738.1:0_T024 capture probe

<400>  33
ctgagatatt ggtggtgaca ttgatggctg tggctggacc aaagcctttg catttggaat       60

gatgtgtact gggaataaga cgacg                                             85


<210>  34
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_001101.2:1010_ProbeB reporter probe

<400>  34
cgaaagccat gacctccgat cactcaggat ggagccgccg atccacacgg agtacttgcg       60

ctcaggagga gcaat                                                        75


<210>  35
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_002046.3:972_ProbeB reporter probe

<400>  35
cgaaagccat gacctccgat cactcccctg ttgctgtagc caaattcgtt gtcataccag       60

gaaatgagct tgaca                                                        75


<210>  36
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_004655.3:527_ProbeB reporter probe

<400>  36
cgaaagccat gacctccgat cactcgcaaa ccagaagtct aaggtatcca cgcatttctc       60

cctctccagg aaagt                                                        75


<210>  37
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_003667.3:3414_ProbeB reporter probe

<400>  37
cgaaagccat gacctccgat cactctagaa tgaaatccca tggatcacag cctctaccta       60

gcaatgtagg tcatt                                                        75


<210>  38
<211>  62
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:150_ProbeB reporter probe

<400>  38
cgaaagccat gacctccgat cactccgctc acactctctg cctccctaac caattgtgtc       60

gc                                                                      62


<210>  39
<211>  68
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:641_ProbeB reporter probe

<400>  39
cgaaagccat gacctccgat cactcatcgg ttgccttggc agtggctgta atccatgcag       60

ttcagaat                                                                68


<210>  40
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:1060_ProbeB reporter probe

<400>  40
cgaaagccat gacctccgat cactccccat ttaaatccac atgtgcgatt atttctgcta       60

caagttcccc attcg                                                        75


<210>  41
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_178565.4:2289_ProbeB reporter probe

<400>  41
cgaaagccat gacctccgat cactcggcct gtgaaactgg ctacaagtga ctggatatag       60

tccctcatgt tttca                                                        75


<210>  42
<211>  63
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0622.1:69_ProbeB reporter probe

<400>  42
cgaaagccat gacctccgat cactccggtc agttcagcgc gatcagcatc tctccgccac       60

gaa                                                                     63


<210>  43
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0623.1:33_ProbeB reporter probe

<400>  43
cgaaagccat gacctccgat cactccgcac cggtcagttc agcgcgatca gcatctctcc       60

g                                                                       61


<210>  44
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0625.1:77_ProbeB reporter probe

<400>  44
cgaaagccat gacctccgat cactccggtc agttcagcgc gatcagcatc tctccgccac       60

gaac                                                                    64


<210>  45
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0624.1:155_ProbeB reporter probe

<400>  45
cgaaagccat gacctccgat cactccggtc agttcagcgc gatcagcatc tctccgccac       60

g                                                                       61


<210>  46
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_032784.4:173_ProbeB reporter probe

<400>  46
cgaaagccat gacctccgat cactctccct tcctttctcc tctttctttt gattgttaat       60

tatatttaat gtttt                                                        75


<210>  47
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_032784.4:634_ProbeB reporter probe

<400>  47
cgaaagccat gacctccgat cactcacagt gcacaatact gacacactcc atagtatggt       60

tgttggcttc caacc                                                        75


<210>  48
<211>  75
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  NM_032784.4:1520_ProbeB reporter probe

<400>  48
cgaaagccat gacctccgat cactcaaatc ctgtgattcc aaatgccagg ccctaattct       60

gagcactctc tagat                                                        75


<210>  49
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0169.1:1_ProbeB reporter probe

<400>  49
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  50
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0736.1:0_ProbeB reporter probe

<400>  50
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  51
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0170.1:1_ProbeB reporter probe

<400>  51
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  52
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0737.1:0_ProbeB reporter probe

<400>  52
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  53
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0524.1:0_ProbeB reporter probe

<400>  53
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  54
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0525.1:0_ProbeB

<400>  54
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  55
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0526.1:0_ProbeB reporter probe

<400>  55
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  56
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0684.1:0_ProbeB reporter probe

<400>  56
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  57
<211>  64
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Fusion_0738.1:0_ProbeB reporter probe

<400>  57
cgaaagccat gacctccgat cactccacag cctccttggc agccttgact aacgttagga       60

tgca                                                                    64


<210>  58
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKe1-Rspo3e2 gene fusion

<400>  58
cctctctcct tggcctctcc tgggatcggc ccaaggccag ttctccgcag tgcatcctaa       60

cgttagtcaa ggctgccaag gaggctgtgc aacatgctca                            100


<210>  59
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKe7-Rspo3e2 gene fusion

<400>  59
tggaacgggg ctcccaggac ctccactaat caccagaaca aaatgtgcag tgcatcctaa       60

cgttagtcaa ggctgccaag gaggctgtgc aacatgctca                            100


<210>  60
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKe6X-Rspo3e2 gene fusion

<400>  60
gttctccgca gaaaaggcct gcagttactg aaatgacaag tgaaaaggag tgcatcctaa       60

cgttagtcaa ggctgccaag gaggctgtgc aacatgctca                            100


<210>  61
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKe13-Rspo3e2 gene fusion

<400>  61
cagtgtggag aaggaaacta aaacccagtg cgtacgcatt gctacaaaag tgcatcctaa       60

cgttagtcaa ggctgccaag gaggctgtgc aacatgctca                            100


<210>  62
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EIF3Ee1-Rspo2e2 gene fusion

<400>  62
ggatcggcat ctagtctttc cgcttcttga atttctctct gtaaaggagg ttcgtggcgg       60

agagatgctg atcgcgctga actgaccggt gcggcccggg                            100


<210>  63
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EIF3Ee1-Rspo2e3 gene fusion

<400>  63
tggatcggca tctagtcttt ccgcttcttg aatttctctc tgtaaaggag ctagttatgt       60

atcaaatccc atttgcaagg gttgtttgtc ttgttcaaag                            100


<210>  64
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  EMC2e1-Rspo2e2 gene fusion

<400>  64
agatggcgaa ggtctcagag ctttacgatg tcacttggga aggttcgtgg cggagagatg       60

ctgatcgcgc tgaactgacc ggtgcggccc gggggtgagt                            100


<210>  65
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PVT1-Rspo2e2 gene fusion

<400>  65
ttggcggtcc ctgtgacctg tggagacacg gccagatctg ccctccagtt cgtggcggag       60

agatgctgat cgcgctgaac tgaccggtgc ggcccggggg                            100


<210>  66
<211>  97
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PVT1-Rspo2e3 gene fusion

<400>  66
ttggcggtcc ctgtgacctg tggagacacg gccagatctg ccctccacta gttatgtatc       60

aaatcccatt tgcaagggtt gtttgtcttg ttcaaag                                97


<210>  67
<211>  100
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  HNF4G-Rspo2e2 gene fusion

<400>  67
tgattctact cttctctaca aatatagact ccgttcccta ccacagcctt gttcgtggcg       60

gagagatgct gatcgcgctg aactgaccgg tgcggcccgg                            100


<210>  68
<211>  132
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKex2-RSPO3ex2 gene fusion

<400>  68
atgatgactt tgaatgggtg catgttagtg ctcaagagcc tcattatcta ccacccgaga       60

tgccccaagt gcatcctaac gttagtcaag gctgccaagg aggctgtgca acatgctcag      120

attacaatgg at                                                          132


<210>  69
<211>  126
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKex4-RSPO3ex2 gene fusion

<400>  69
tctcaggagg gagaagtggt tatattgcca ttgatgacat ccaagtactg agttatcctt       60

gtgtgcatcc taacgttagt caaggctgcc aaggaggctg tgcaacatgc tcagattaca      120

atggat                                                                 126


<210>  70
<211>  127
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKex6-RSPO3ex2 gene fusion

<400>  70
cgctgtgtaa ctcagtcaga acgaggttcc ggtgtgtcca attttgctca acttattgtg       60

agagtgcatc ctaacgttag tcaaggctgc caaggaggct gtgcaacatg ctcagattac      120

aatggat                                                                127


<210>  71
<211>  124
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKex8-RSPO3ex2 gene fusion

<400>  71
ctaaccaatc cagagggaag gaaggagagt gaagagacaa ttattcaaac tgatgaagat       60

gtgcatccta acgttagtca aggctgccaa ggaggctgtg caacatgctc agattacaat      120

ggat                                                                   124


<210>  72
<211>  126
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PTPRKex10-RSPO3ex2 gene fusion

<400>  72
gagccagcac ggtcaaaggc tttggtccag ccacagccat caatgtcacc accaatatct       60

cagtgcatcc taacgttagt caaggctgcc aaggaggctg tgcaacatgc tcagattaca      120

atggat                                                                 126


