                         SEQUENCE LISTING

<110>  International Rice Research Institute
       SINGH, Nagendra Kumar
 
<120>  Semi-Dwarf Drought Tolerant Rice and Related Materials and 
       Methods

<130>  171778

<150>  US 62/114,430
<151>  2015-02-10

<160>  189   

<170>  PatentIn version 3.5

<210>  1
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_34 marker - Secondary amplification 
       primer

<400>  1
acgttggatg acagcagcat gtgatcagac                                        30


<210>  2
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_34 marker - Primary amplification primer

<400>  2
acgttggatg gaaaacaggg cggtgatctc                                        30


<210>  3
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_34 marker - Unique event polymorphism

<400>  3
ccagatttgg agaataataa tgct                                              24


<210>  4
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_34 marker - EXT1 sequence

<400>  4
ccagatttgg agaataataa tgcta                                             25


<210>  5
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_34 marker - EXT2 sequence

<400>  5
ccagatttgg agaataataa tgctt                                             25


<210>  6
<211>  31
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_38 marker - Secondary amplification 
       primer

<400>  6
acgttggatg catgttcaaa ttatacctgg g                                      31


<210>  7
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_38 marker - Primary amplification primer

<400>  7
acgttggatg aatcatgacc tggtaaatgg                                        30


<210>  8
<211>  27
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_38 marker - Unique event polymorphism

<400>  8
cttctacctg ggaaaaaagt tcaattc                                           27


<210>  9
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_38 marker - EXT1 sequence

<400>  9
cttctacctg ggaaaaaagt tcaattca                                          28


<210>  10
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY1.1 gene, nksdty1_1_38 marker - EXT2 sequence

<400>  10
cttctacctg ggaaaaaagt tcaattcg                                          28


<210>  11
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.1 gene, RM520 marker - Forward primer sequence

<400>  11
aggagcaaga aaagttcccc                                                   20


<210>  12
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.1 gene, RM520 marker - Reverse primer sequence

<400>  12
gccaatgtgt gacgcaatag                                                   20


<210>  13
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.1 gene, RM416 marker - Forward primer sequence

<400>  13
gggagttagg gttttggagc                                                   20


<210>  14
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.1 gene, RM416 marker - Reverse primer sequence

<400>  14
tccagtttca cactgcttcg                                                   20


<210>  15
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.1 gene, RM16030 marker - Forward primer sequence

<400>  15
gcgaactatg agcatgccaa cc                                                22


<210>  16
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.1 gene, RM16030 marker - Reverse primer sequence

<400>  16
ggattacctg gtgtgtgcag tgtcc                                             25


<210>  17
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.2 gene, RM7332 marker - Forward primer sequence

<400>  17
acactgtaca ccacacttca gc                                                22


<210>  18
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.2 gene, RM7332 marker - Reverse primer sequence

<400>  18
cagggaaatg acactgtccc                                                   20


<210>  19
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.2 gene, RM523 marker - Forward primer sequence

<400>  19
aaggcattgc agctagaagc                                                   20


<210>  20
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.2 gene, RM523 marker - Reverse primer sequence

<400>  20
gcacttggga ggtttgctag                                                   20


<210>  21
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.2 gene, RM545 marker - Forward primer sequence

<400>  21
caatggcaga gacccaaaag                                                   20


<210>  22
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY3.2 gene, RM545 marker - Reverse primer sequence

<400>  22
ctggcatgta acgacagtgg                                                   20


<210>  23
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM121 marker - Forward primer sequence

<400>  23
accgtcgcct tccactttcc cc                                                22


<210>  24
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM121 marker - Reverse primer sequence

<400>  24
ttcggggttg ccggtgatgt tg                                                22


<210>  25
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM541 marker - Forward primer sequence

<400>  25
tataaccgac ctcagtgccc                                                   20


<210>  26
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM541 marker - Reverse primer sequence

<400>  26
ccttactccc atgccatgag                                                   20


<210>  27
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM3 marker - Forward primer sequence

<400>  27
acactgtagc ggccactg                                                     18


<210>  28
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM3 marker - Reverse primer sequence

<400>  28
cctccactgc tccacatctt                                                   20


<210>  29
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM275 marker - Forward primer sequence

<400>  29
gcattgatgt gccaatcg                                                     18


<210>  30
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  qDTY6.2 gene, RM275 marker - Reverse primer sequence

<400>  30
cattgcaaca tcttcaacat cc                                                22


<210>  31
<211>  3123
<212>  DNA
<213>  artificial sequence

<220>
<223>  SD1 gene - Full sequence

<400>  31
ctgcacacac acacacactc acactcacac acgctctcaa ctcactcccg ctcaacacag       60

cgctcacttc tcatctccaa tctcatggtg gccgagcacc ccacgccacc acagccgcac      120

caaccaccgc ccatggactc caccgccggc tctggcattg ccgccccggc ggcggcggcg      180

gtgtgcgacc tgaggatgga gcccaagatc ccggagccat tcgtgtggcc gaacggcgac      240

gcgaggccgg cgtcggcggc ggagctggac atgcccgtgg tcgacgtggg cgtgctccgc      300

gacggcgacg ccgaggggct gcgccgcgcc gcggcgcagg tggccgccgc gtgcgccacg      360

cacgggttct tccaggtgtc cgagcacggc gtcgacgccg ctctggcgcg cgccgcgctc      420

gacggcgcca gcgacttctt ccgcctcccg ctcgccgaga agcgccgcgc gcgccgcgtc      480

ccgggcaccg tgtccggcta caccagcgcc cacgccgacc gcttcgcctc caagctccca      540

tggaaggaga ccctctcctt cggcttccac gaccgcgccg ccgcccccgt cgtcgccgac      600

tacttctcca gcaccctcgg ccccgacttc gcgccaatgg ggtaattaaa acgatggtgg      660

acgacattgc atttcaaatt caaaacaaat tcaaaacaca ccgaccgaga ttatgctgaa      720

ttcaaacgcg tttgtgcgcg caggagggtg taccagaagt actgcgagga gatgaaggag      780

ctgtcgctga cgatcatgga actcctggag ctgagcctgg gcgtggagcg aggctactac      840

agggagttct tcgcggacag cagctcaatc atgcggtgca actactaccc gccatgcccg      900

gagccggagc ggacgctcgg cacgggcccg cactgcgacc ccaccgccct caccatcctc      960

ctccaggacg acgtcggcgg cctcgaggtc ctcgtcgacg gcgaatggcg ccccgtcagc     1020

cccgtccccg gcgccatggt catcaacatc ggcgacacct tcatggtaaa ccatctccta     1080

ttctcctctc ctctgttctc ctctgcttcg aagcaacaga acaagtaatt caagcttttt     1140

tttctctctc gcgcgaaatt gacgagaaaa ataagatcgt ggtaggggcg gggctttcag     1200

ctgaaagcgg gaagaaaccg acctgacgtg atttctctgt tccaatcaca aacaatggaa     1260

tgccccactc ctccatgtgt tatgatttat ctcacatctt atagttaata ggagtaagta     1320

acaagctact tttttcatat tatagttcgt ttgatttttt ttttttaaag tttttttagt     1380

tttatccaaa tttattgaaa aacttagcaa cgtttataat accaaattag tctcatttag     1440

tttaatattg tatatatttt gataatatat ttatgttata ttaaaaatat tactatattt     1500

ttctataaac attattaaaa gccatttata atataaaatg gaaggagtaa ttaatatgga     1560

tctcccccga catgagaata ttttccgatg gtgtgacgac gccatgtaag cttcggtggg     1620

cctggacggc cagaggtgcc aacagccacg tccaacaacc cctgggtccc cccctaacac     1680

tccaaacagt agtgagtagt gtctcgtcgc gttttagtat ttgatgacaa acaaagtgtg     1740

agttgagtta gccaccacca acttgcacac gagcacatac atttgtgtcc attctcgcca     1800

gtcacttcca tctctagtcc taactcctat ctagcgatgt aagcggataa tttcatcatc     1860

cgtatataaa cctgtttgtt atagttaatt tcctatataa tactataaca gtatacattt     1920

taaaagaaaa caaaattagg ataaacaggc cctgctccta tccatccatg gcacttggaa     1980

ggaccagact cggtcatgcc atgccaagcc aagatatggg ttatggaaga gtagagaaga     2040

ggagagatga gagataagca tgcgttctcc tcctcgttgg atgtgtattt tggagggatt     2100

tgtgtagtag tagcagcggc gccgcgggga cggatgcgga tggtggcgct ttcggtggcg     2160

ttttcccggg ggggttttgg tttggcgctt gggggggatg gcatggcgcg gcgtgcggct     2220

gcacgccaca cacacgcgcg cgcacgcacg tacgtcgtcg tcgccgcggg cggacggtag     2280

cttagggtgg tgtgttccgc gcgcgggcgc ggattgttcc atgccgatcg atttggcgcc     2340

accctcgccg cggctcttgt cgcgtcgtgc gcctctctcg cgcggtttgt ccttgtcgcg     2400

ttgctcagcc ggcgacgggg gcacggacat tggcgatgta gccctgcacg tgtcggcctc     2460

tccgttgatg aatgatgatg tatgtatgta tttttttttg tctgaaggaa tttgtgggga     2520

attgttgtgt gtgcaggcgc tgtcgaacgg gaggtataag agctgcctgc acagggcggt     2580

ggtgaaccag cggcgggagc ggcggtcgct ggcgttcttc ctgtgcccgc gggaggacag     2640

ggtggtgcgg ccgccgccga gcgccgccac gccgcagcac tacccggact tcacctgggc     2700

cgacctcatg cgcttcacgc agcgccacta ccgcgccgac acccgcacgc tcgacgcctt     2760

cacgcgctgg ctcgcgccgc cggccgccga cgccgccgcg acggcgcagg tcgaggcggc     2820

cagctgatcg ccgaacggaa cgaaacggaa cgaacagaag ccgatttttg gcggggccca     2880

cgcccacgtg aggccccacg tggacagtgg gcccgggcgg aggtggcacc cacgtggacc     2940

gcgggccccg cgccgccttc caattttgga ccctaccgct gtacatattc atatattgca     3000

agaagaagca aaacgtacgt gtgggttggg ttgggcttct ctctattact aaaaaaaata     3060

taatggaacg acggatgaat ggatgcttat ttatttatct aaattgaatt cgaattcggc     3120

tca                                                                   3123


<210>  32
<211>  383
<212>  DNA
<213>  artificial sequence

<220>
<223>  SD1 gene - The 383bp deletion of sd1 resulting in dwarfism

<400>  32
cgagcacggc gtcgacgccg ctctggcgcg cgccgcgctc gacggcgcca gcgacttctt       60

ccgcctcccg ctcgccgaga agcgccgcgc gcgccgcgtc ccgggcaccg tgtccggcta      120

caccagcgcc cacgccgacc gcttcgcctc caagctccca tggaaggaga ccctctcctt      180

cggcttccac gaccgcgccg ccgcccccgt cgtcgccgac tacttctcca gcaccctcgg      240

ccccgacttc gcgccaatgg ggtaattaaa acgatggtgg acgacattgc atttcaaatt      300

caaaacaaat tcaaaacaca ccgaccgaga ttatgctgaa ttcaaacgcg tttgtgcgcg      360

caggagggtg taccagaagt act                                              383


<210>  33
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  SD1 gene, Sd1-forward marker - Forward primer for detection of 
       383bp deletion

<400>  33
cacgcacggg ttcttccagg tg                                                22


<210>  34
<211>  23
<212>  DNA
<213>  artificial sequence

<220>
<223>  SD1 gene, Sd1-reverse marker - Reverse primer for detection of 
       383bp deletion

<400>  34
aggagaatag gagatggttt acc                                               23


<210>  35
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_01 - Secondary amplification primer

<400>  35
acgttggatg aagctgatgg aaagagggag                                        30


<210>  36
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_01 - Primary amplification primer

<400>  36
acgttggatg ctgaattatg aaaccggaac                                        30


<210>  37
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_02 - Secondary amplification primer

<400>  37
acgttggatg gacatgtata gtggcctgac                                        30


<210>  38
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_02 - Primary amplification primer

<400>  38
acgttggatg gaaggatacc tggtcttttg                                        30


<210>  39
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_04 - Secondary amplification primer

<400>  39
acgttggatg cctgctgtac tctgctttag                                        30


<210>  40
<211>  31
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_04 - Primary amplification primer

<400>  40
acgttggatg gccaacaagc agaatttcaa g                                      31


<210>  41
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_05 - Secondary amplification primer

<400>  41
acgttggatg ttatgatgcc acagcctctc                                        30


<210>  42
<211>  31
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_05 - Primary amplification primer

<400>  42
acgttggatg caagatgaag acagcaatag g                                      31


<210>  43
<211>  29
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_06 - Secondary amplification primer

<400>  43
acgttggatg cgccgactat agagggttc                                         29


<210>  44
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_06 - Primary amplification primer

<400>  44
acgttggatg aatcgctgca acggtaacgg                                        30


<210>  45
<211>  29
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_07 - Secondary amplification primer

<400>  45
acgttggatg gtgcccaagg ccatcgtgc                                         29


<210>  46
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_07 - Primary amplification primer

<400>  46
acgttggatg tagaggcggt acttctggag                                        30


<210>  47
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_1 - Secondary amplification primer

<400>  47
acgttggatg aggagttcca tgatcgtcag                                        30


<210>  48
<211>  29
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_1 - Primary amplification primer

<400>  48
acgttggatg cacgcacggg ttcttccag                                         29


<210>  49
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_10 - Secondary amplification primer

<400>  49
acgttggatg ttgtgcagct atggaggaag                                        30


<210>  50
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_10 - Primary amplification primer

<400>  50
acgttggatg tgaaacacca atccggcaag                                        30


<210>  51
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_11 - Secondary amplification primer

<400>  51
acgttggatg ggcatgctac tagtaaagag                                        30


<210>  52
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_11 - Primary amplification primer

<400>  52
acgttggatg taacacccag ttaacgtggc                                        30


<210>  53
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_13 - Secondary amplification primer

<400>  53
acgttggatg ggtttccatc aaagcggaac                                        30


<210>  54
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_13 - Primary amplification primer

<400>  54
acgttggatg tgccgcgtca agcaactctc                                        30


<210>  55
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_15 - Secondary amplification primer

<400>  55
acgttggatg ggtagttttt gctgctgctg                                        30


<210>  56
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_15 - Primary amplification primer

<400>  56
acgttggatg catccaagac cataccatgc                                        30


<210>  57
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_18 - Secondary amplification primer

<400>  57
acgttggatg ggctgcgatg tagtttaagg                                        30


<210>  58
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_18 - Primary amplification primer

<400>  58
acgttggatg atcttgttgc ctgtctccac                                        30


<210>  59
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_20 - Secondary amplification primer

<400>  59
acgttggatg tattgacaaa ggcacccctg                                        30


<210>  60
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_20 - Primary amplification primer

<400>  60
acgttggatg acacctactt gaatgcagag                                        30


<210>  61
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_21 - Secondary amplification primer

<400>  61
acgttggatg actcctcacc gtgtacttgc                                        30


<210>  62
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_21 - Primary amplification primer

<400>  62
acgttggatg tgttgcgcgg caagatcaag                                        30


<210>  63
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_23 - Secondary amplification primer

<400>  63
acgttggatg tggtcgtaga agaactcctg                                        30


<210>  64
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_23 - Primary amplification primer

<400>  64
acgttggatg atgagcctgt ggtggatggt                                        30


<210>  65
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_24 - Secondary amplification primer

<400>  65
acgttggatg caacgagaaa aacgacgcac                                        30


<210>  66
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_24 - Primary amplification primer

<400>  66
acgttggatg attgcaggtc cggtgtcagt                                        30


<210>  67
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_25 - Secondary amplification primer

<400>  67
acgttggatg cagcttcaac aatagcagcc                                        30


<210>  68
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_25 - Primary amplification primer

<400>  68
acgttggatg gggaaaaaat agtcgtgctc                                        30


<210>  69
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_27 - Secondary amplification primer

<400>  69
acgttggatg gccaggtttt gatgtatgag                                        30


<210>  70
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_27 - Primary amplification primer

<400>  70
acgttggatg ggcaaagagt gaaacggttg                                        30


<210>  71
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_28 - Secondary amplification primer

<400>  71
acgttggatg cggtgcatca tagtcatagc                                        30


<210>  72
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_28 - Primary amplification primer

<400>  72
acgttggatg ccttttgaag taccatggtg                                        30


<210>  73
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_29 - Secondary amplification primer

<400>  73
acgttggatg caacatcctg gtaattcccc                                        30


<210>  74
<211>  31
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_29 - Primary amplification primer

<400>  74
acgttggatg caattcaaaa gacatgctgg g                                      31


<210>  75
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_30 - Secondary amplification primer

<400>  75
acgttggatg tctttcccaa ctacgtacgc                                        30


<210>  76
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_30 - Primary amplification primer

<400>  76
acgttggatg tgtgcagtta gctagtgcag                                        30


<210>  77
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_34 - Secondary amplification primer

<400>  77
acgttggatg acagcagcat gtgatcagac                                        30


<210>  78
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_34 - Primary amplification primer

<400>  78
acgttggatg gaaaacaggg cggtgatctc                                        30


<210>  79
<211>  31
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_38 - Secondary amplification primer

<400>  79
acgttggatg catgttcaaa ttatacctgg g                                      31


<210>  80
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_38 - Primary amplification primer

<400>  80
acgttggatg aatcatgacc tggtaaatgg                                        30


<210>  81
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_40 - Secondary amplification primer

<400>  81
acgttggatg cagagcttga cctcgaggaa                                        30


<210>  82
<211>  29
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_40 - Primary amplification primer

<400>  82
acgttggatg ctacgggatc ttcctcgtc                                         29


<210>  83
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_42 - Secondary amplification primer

<400>  83
acgttggatg ctaccagaaa gccttgcttg                                        30


<210>  84
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_42 - Primary amplification primer

<400>  84
acgttggatg gtgtaatttg ggaaggtagg                                        30


<210>  85
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_44 - Secondary amplification primer

<400>  85
acgttggatg ctcagaaaca gtagagacag                                        30


<210>  86
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_44 - Primary amplification primer

<400>  86
acgttggatg gaacaagagc ttcaggaatc                                        30


<210>  87
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_45 - Secondary amplification primer

<400>  87
acgttggatg tgtggatgat agtactaggc                                        30


<210>  88
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_45 - Primary amplification primer

<400>  88
acgttggatg cagcatttct tgcttcccag                                        30


<210>  89
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_46 - Secondary amplification primer

<400>  89
acgttggatg gaattccaat gtggtaggcg                                        30


<210>  90
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_46 - Primary amplification primer

<400>  90
acgttggatg tttgcagcag tcaatgtggg                                        30


<210>  91
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_47 - Secondary amplification primer

<400>  91
acgttggatg tggataccct cttcagcaac                                        30


<210>  92
<211>  30
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_47 - Primary amplification primer

<400>  92
acgttggatg gaaactgaag catagttctc                                        30


<210>  93
<211>  19
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_01 - Unique event polymorphism

<400>  93
ctcctaaggt ggatcctgc                                                    19


<210>  94
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_01 - EXT1 sequence

<400>  94
ctcctaaggt ggatcctgcc                                                   20


<210>  95
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_01 - EXT2 sequence

<400>  95
ctcctaaggt ggatcctgct                                                   20


<210>  96
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_02 - Unique event polymorphism

<400>  96
tttcaacact gagattgatt cttt                                              24


<210>  97
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_02 - EXT1 sequence

<400>  97
tttcaacact gagattgatt cttta                                             25


<210>  98
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_02 - EXT2 sequence

<400>  98
tttcaacact gagattgatt ctttg                                             25


<210>  99
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_04 - Unique event polymorphism

<400>  99
taagtgaaca atctgactca taatc                                             25


<210>  100
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_04 - EXT1 sequence

<400>  100
taagtgaaca atctgactca taatcc                                            26


<210>  101
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_04 - EXT2 sequence

<400>  101
taagtgaaca atctgactca taatct                                            26


<210>  102
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_05 - Unique event polymorphism

<400>  102
cctgctccat ctgcattt                                                     18


<210>  103
<211>  19
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_05 - EXT1 sequence

<400>  103
cctgctccat ctgcatttc                                                    19


<210>  104
<211>  19
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_05 - EXT2 sequence

<400>  104
cctgctccat ctgcatttg                                                    19


<210>  105
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_06 - Unique event polymorphism

<400>  105
gggctagagg gttcgctgaa                                                   20


<210>  106
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_06 - EXT1 sequence

<400>  106
gggctagagg gttcgctgaa c                                                 21


<210>  107
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_06 - EXT2 sequence

<400>  107
gcgacagctc cttcatctcc tcgc                                              24


<210>  108
<211>  17
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_07 - Unique event polymorphism

<400>  108
atcgtgcgcc tcatgaa                                                      17


<210>  109
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_07 - EXT1 sequence

<400>  109
atcgtgcgcc tcatgaac                                                     18


<210>  110
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_07 - EXT2 sequence

<400>  110
atcgtgcgcc tcatgaat                                                     18


<210>  111
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_1 - Unique event polymorphism

<400>  111
gcgacagctc cttcatctcc tcgc                                              24


<210>  112
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_1 - EXT1 sequence

<400>  112
atccctgatc gtcagcgaca c                                                 21


<210>  113
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_1 - EXT2 sequence

<400>  113
atccctgatc gtcagcgaca a                                                 21


<210>  114
<211>  16
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_10 - Unique event polymorphism

<400>  114
gtgtgtgcgg agatag                                                       16


<210>  115
<211>  17
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_10 - EXT1 sequence

<400>  115
gtgtgtgcgg agatagc                                                      17


<210>  116
<211>  17
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_10 - EXT2 sequence

<400>  116
gtgtgtgcgg agatagt                                                      17


<210>  117
<211>  23
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_11 - Unique event polymorphism

<400>  117
gcccaacata tcgatcgaat tca                                               23


<210>  118
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_11 - EXT1 sequence

<400>  118
gcccaacata tcgatcgaat tcaa                                              24


<210>  119
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_11 - EXT2 sequence

<400>  119
gcccaacata tcgatcgaat tcag                                              24


<210>  120
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1__13 - Unique event polymorphism

<400>  120
aagggagctg cacagtggac a                                                 21


<210>  121
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1__13 - EXT1 sequence

<400>  121
aagggagctg cacagtggac ac                                                22


<210>  122
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1__13 - EXT2 sequence

<400>  122
aagggagctg cacagtggac at                                                22


<210>  123
<211>  15
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_15 - Unique event polymorphism

<400>  123
tgcattctgt gggtg                                                        15


<210>  124
<211>  16
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_15 - EXT1 sequence

<400>  124
tgcattctgt gggtgc                                                       16


<210>  125
<211>  16
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_15 - EXT2 sequence

<400>  125
tgcattctgt gggtgt                                                       16


<210>  126
<211>  19
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_18 - Unique event polymorphism

<400>  126
gacatctctc ccttactga                                                    19


<210>  127
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_18 - EXT1 sequence

<400>  127
gacatctctc ccttactgac                                                   20


<210>  128
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_18 - EXT2 sequence

<400>  128
gacatctctc ccttactgaa                                                   20


<210>  129
<211>  23
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_20 - Unique event polymorphism

<400>  129
ggatcatgct ttgccaggtt gac                                               23


<210>  130
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_20 - EXT1 sequence

<400>  130
ggatcatgct ttgccaggtt gaca                                              24


<210>  131
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_20 - EXT2 sequence

<400>  131
ggatcatgct ttgccaggtt gacg                                              24


<210>  132
<211>  15
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_21 - Unique event polymorphism

<400>  132
cttgccggcg tcatc                                                        15


<210>  133
<211>  16
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_21 - EXT1 sequence

<400>  133
cttgccggcg tcatcc                                                       16


<210>  134
<211>  16
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_21 - EXT2 sequence

<400>  134
cttgccggcg tcatca                                                       16


<210>  135
<211>  20
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_23 - Unique event polymorphism

<400>  135
acggcggcga cgccgacgag                                                   20


<210>  136
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_23 - EXT1 sequence

<400>  136
acggcggcga cgccgacgag c                                                 21


<210>  137
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_23 - EXT2 sequence

<400>  137
acggcggcga cgccgacgag a                                                 21


<210>  138
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_24 - Unique event polymorphism

<400>  138
gcccgctctc tttgcacagc cgcttc                                            26


<210>  139
<211>  27
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_24 - EXT1 sequence

<400>  139
gcccgctctc tttgcacagc cgcttca                                           27


<210>  140
<211>  27
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_24 - EXT2 sequence

<400>  140
gcccgctctc tttgcacagc cgcttct                                           27


<210>  141
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_25 - Unique event polymorphism

<400>  141
cgccgcaatg cttgaacctg a                                                 21


<210>  142
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_25 - EXT1 sequence

<400>  142
cgccgcaatg cttgaacctg ac                                                22


<210>  143
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_25 - EXT2 sequence

<400>  143
cgccgcaatg cttgaacctg at                                                22


<210>  144
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_27 - Unique event polymorphism

<400>  144
atatcttggt gaggttgt                                                     18


<210>  145
<211>  19
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_27 - EXT1 sequence

<400>  145
atatcttggt gaggttgtc                                                    19


<210>  146
<211>  19
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_27 - EXT2 sequence

<400>  146
atatcttggt gaggttgtt                                                    19


<210>  147
<211>  15
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_28 - Unique event polymorphism

<400>  147
tccagtagtg cgacc                                                        15


<210>  148
<211>  16
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_28 - EXT1 sequence

<400>  148
tccagtagtg cgacca                                                       16


<210>  149
<211>  16
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_28 - EXT2 sequence

<400>  149
tccagtagtg cgaccg                                                       16


<210>  150
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_29 - Unique event polymorphism

<400>  150
taccattttg ccagatatgc ta                                                22


<210>  151
<211>  23
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_29 - EXT1 sequence

<400>  151
taccattttg ccagatatgc tac                                               23


<210>  152
<211>  23
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_29 - EXT2 sequence

<400>  152
taccattttg ccagatatgc tat                                               23


<210>  153
<211>  17
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_30 - Unique event polymorphism

<400>  153
gagcttggtg caaactc                                                      17


<210>  154
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_30 - EXT1 sequence

<400>  154
gagcttggtg caaactcc                                                     18


<210>  155
<211>  18
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_30 - EXT2 sequence

<400>  155
gagcttggtg caaactct                                                     18


<210>  156
<211>  24
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_34 - Unique event polymorphism

<400>  156
ccagatttgg agaataataa tgct                                              24


<210>  157
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_34 - EXT1 sequence

<400>  157
ccagatttgg agaataataa tgcta                                             25


<210>  158
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_34 - EXT2 sequence

<400>  158
ccagatttgg agaataataa tgctt                                             25


<210>  159
<211>  27
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_38 - Unique event polymorphism

<400>  159
cttctacctg ggaaaaaagt tcaattc                                           27


<210>  160
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_38 - EXT1 sequence

<400>  160
cttctacctg ggaaaaaagt tcaattca                                          28


<210>  161
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_38 - EXT2 sequence

<400>  161
cttctacctg ggaaaaaagt tcaattcg                                          28


<210>  162
<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_40 - Unique event polymorphism

<400>  162
gggctaggaa gacggcgacg ag                                                22


<210>  163
<211>  23
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_40 - EXT1 sequence

<400>  163
gggctaggaa gacggcgacg agc                                               23


<210>  164
<211>  23
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_40 - EXT2 sequence

<400>  164
gggctaggaa gacggcgacg agg                                               23


<210>  165
<211>  27
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_42 - Unique event polymorphism

<400>  165
gggtaagctg ggcatgaaaa tgaactc                                           27


<210>  166
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_42 - EXT1 sequence

<400>  166
gggtaagctg ggcatgaaaa tgaactcc                                          28


<210>  167
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_42 - EXT2 sequence

<400>  167
gggtaagctg ggcatgaaaa tgaactct                                          28


<210>  168
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_44 - Unique event polymorphism

<400>  168
tctcaacagt agagacagat ttttc                                             25


<210>  169
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_44 - EXT1 sequence

<400>  169
tctcaacagt agagacagat ttttca                                            26


<210>  170
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_44 - EXT2 sequence

<400>  170
tctcaacagt agagacagat ttttcg                                            26


<210>  171
<211>  25
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_45 - Unique event polymorphism

<400>  171
gagtatagta ctaggcatga aacag                                             25


<210>  172
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_45 - EXT1 sequence

<400>  172
gagtatagta ctaggcatga aacagc                                            26


<210>  173
<211>  26
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_45 - EXT2 sequence

<400>  173
gagtatagta ctaggcatga aacagg                                            26


<210>  174
<211>  27
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_46 - Unique event polymorphism

<400>  174
gtgcaaatgt ggtaggcgga atgactc                                           27


<210>  175
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_46 - EXT1 sequence

<400>  175
gtgcaaatgt ggtaggcgga atgactca                                          28


<210>  176
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_46 - EXT2 sequence

<400>  176
gtgcaaatgt ggtaggcgga atgactcg                                          28


<210>  177
<211>  27
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_47 - Unique event polymorphism

<400>  177
agcaacatct gtagtaaata gtaagtt                                           27


<210>  178
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_47 - EXT1 sequence

<400>  178
agcaacatct gtagtaaata gtaagttc                                          28


<210>  179
<211>  28
<212>  DNA
<213>  artificial sequence

<220>
<223>  SNP_ID nksdty1_1_47 - EXT2 sequence

<400>  179
agcaacatct gtagtaaata gtaagtta                                          28


<210>  180
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  180
cttgttcgag gacgaagata ggg                                               23


<210>  181
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  181
ccagtttacc agggtcgaaa cc                                                22


<210>  182
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  182
tcctgcgaac tgaagagttg                                                   20


<210>  183
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  183
agagcaaaac cctggttcac                                                   20


<210>  184
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  184
tgcgtacctc tgctcctctc tgc                                               23


<210>  185
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  185
gacgaagccg accaagtgaa gc                                                22


<210>  186
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  186
ctgcaaatgc acaggaatca gg                                                22


<210>  187
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  187
tcctctcgcc tttctttctc tcc                                               23


<210>  188
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  188
agtatgccct gcccactaca ctagg                                             25


<210>  189
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  189
cagcgaatgg caagagcaac c                                                 21


