                         SEQUENCE LISTING

<110>  THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
       Rand, Arthur
 
<120>  MULTIPLE READ NANOPORE SEQUENCING OF POLYNUCLEOTIDES

<130>  482.39-1PCT

<150>  US 62/056,963
<151>  2014-09-29

<160>  8     

<170>  PatentIn version 3.5

<210>  1
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetically prepared oligonucleotide sequence


<220>
<221>  misc_feature
<222>  (16)..(20)
<223>  enzyme loading site

<400>  1
ggttggtgtg gttggnnnnn                                                   20


<210>  2
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetically prepared oligonucleotide sequence


<220>
<221>  misc_feature
<222>  (17)..(21)
<223>  enzyme loading site

<400>  2
gggtggggag ggtgggnnnn n                                                 21


<210>  3
<211>  26
<212>  DNA
<213>  Synthetic


<220>
<221>  misc_feature
<222>  (22)..(26)
<223>  enzyme loading site

<400>  3
gggttagggt tagggttagg gnnnnn                                            26


<210>  4
<211>  21
<212>  DNA
<213>  Synthetic


<220>
<221>  misc_feature
<222>  (17)..(21)
<223>  enzyme loading site

<400>  4
gggtgggttg ggtgggnnnn n                                                 21


<210>  5
<211>  1100
<212>  PRT
<213>  Homo sapiens

<400>  5

Asp Glu Cys Gly Ser Arg Ile Arg Arg Arg Val Ser Leu Pro Lys Arg 
1               5                   10                  15      


Asn Arg Pro Ser Leu Gly Cys Ile Phe Gly Ala Pro Thr Ala Ala Glu 
            20                  25                  30          


Leu Glu Pro Gly Asp Glu Gly Lys Glu Glu Glu Glu Met Val Ala Glu 
        35                  40                  45              


Asn Arg Arg Arg Lys Thr Ala Gly Val Leu Pro Val Glu Val Gln Pro 
    50                  55                  60                  


Leu Leu Leu Ser Asp Ser Pro Glu Cys Leu Val Leu Gly Gly Gly Asp 
65                  70                  75                  80  


Thr Asn Pro Asp Leu Leu Arg His Met Pro Thr Asp Arg Gly Val Gly 
                85                  90                  95      


Asp Gln Pro Asn Asp Ser Glu Val Asp Met Phe Gly Asp Tyr Asp Ser 
            100                 105                 110         


Phe Thr Glu Asn Ser Phe Ile Ala Gln Val Asp Asp Leu Glu Gln Lys 
        115                 120                 125             


Tyr Met Gln Leu Pro Glu His Lys Lys His Ala Thr Asp Phe Ala Thr 
    130                 135                 140                 


Glu Asn Leu Cys Ser Glu Ser Ile Lys Asn Lys Leu Ser Ile Thr Thr 
145                 150                 155                 160 


Ile Gly Asn Leu Thr Glu Leu Gln Thr Asp Lys His Thr Glu Asn Gln 
                165                 170                 175     


Ser Gly Tyr Glu Gly Val Thr Ile Glu Pro Gly Ala Asp Leu Leu Tyr 
            180                 185                 190         


Asp Val Pro Ser Ser Gln Ala Ile Tyr Phe Glu Asn Leu Gln Asn Ser 
        195                 200                 205             


Ser Asn Asp Leu Gly Asp His Ser Met Lys Glu Arg Asp Trp Lys Ser 
    210                 215                 220                 


Ser Ser His Asn Thr Val Asn Glu Glu Leu Pro His Asn Cys Ile Glu 
225                 230                 235                 240 


Gln Pro Gln Gln Asn Asp Glu Ser Ser Ser Lys Val Arg Thr Ser Ser 
                245                 250                 255     


Asp Met Asn Arg Arg Lys Ser Ile Lys Asp His Leu Lys Asn Ala Met 
            260                 265                 270         


Thr Gly Asn Ala Lys Ala Gln Thr Pro Ile Phe Ser Arg Ser Lys Gln 
        275                 280                 285             


Leu Lys Asp Thr Leu Leu Ser Glu Glu Ile Asn Val Ala Lys Lys Thr 
    290                 295                 300                 


Val Glu Ser Ser Ser Asn Asp Leu Gly Pro Phe Tyr Ser Leu Pro Ser 
305                 310                 315                 320 


Lys Val Arg Asp Leu Tyr Ala Gln Phe Lys Gly Ile Glu Lys Leu Tyr 
                325                 330                 335     


Glu Trp Gln His Thr Cys Leu Thr Leu Asn Ser Val Gln Glu Arg Lys 
            340                 345                 350         


Asn Leu Ile Tyr Ser Leu Pro Thr Ser Gly Gly Lys Thr Leu Val Ala 
        355                 360                 365             


Glu Ile Leu Met Leu Gln Glu Leu Leu Cys Cys Arg Lys Asp Val Leu 
    370                 375                 380                 


Met Ile Leu Pro Tyr Val Ala Ile Val Gln Glu Lys Ile Ser Gly Leu 
385                 390                 395                 400 


Ser Ser Phe Gly Ile Glu Leu Gly Phe Phe Val Glu Glu Tyr Ala Gly 
                405                 410                 415     


Ser Lys Gly Arg Phe Pro Pro Thr Lys Arg Arg Glu Lys Lys Ser Leu 
            420                 425                 430         


Tyr Ile Ala Thr Ile Glu Lys Gly His Ser Leu Val Asn Ser Leu Ile 
        435                 440                 445             


Glu Thr Gly Arg Ile Asp Ser Leu Gly Leu Val Val Val Asp Glu Leu 
    450                 455                 460                 


His Met Ile Gly Glu Gly Ser Arg Gly Ala Thr Leu Glu Met Thr Leu 
465                 470                 475                 480 


Ala Lys Ile Leu Tyr Thr Ser Lys Thr Thr Gln Ile Ile Gly Met Ser 
                485                 490                 495     


Ala Thr Leu Asn Asn Val Glu Asp Leu Gln Lys Phe Leu Gln Ala Glu 
            500                 505                 510         


Tyr Tyr Thr Ser Gln Phe Arg Pro Val Glu Leu Lys Glu Tyr Leu Lys 
        515                 520                 525             


Ile Asn Asp Thr Ile Tyr Glu Val Asp Ser Lys Ala Glu Asn Gly Met 
    530                 535                 540                 


Thr Phe Ser Arg Leu Leu Asn Tyr Lys Tyr Ser Asp Thr Leu Lys Lys 
545                 550                 555                 560 


Met Asp Pro Asp His Leu Val Ala Leu Val Thr Glu Val Ile Pro Asn 
                565                 570                 575     


Tyr Ser Cys Leu Val Phe Cys Pro Ser Lys Lys Asn Cys Glu Asn Val 
            580                 585                 590         


Ala Glu Met Ile Cys Lys Phe Leu Ser Lys Glu Tyr Leu Lys His Lys 
        595                 600                 605             


Glu Lys Glu Lys Cys Glu Val Ile Lys Asn Leu Lys Asn Ile Gly Asn 
    610                 615                 620                 


Gly Asn Leu Cys Pro Val Leu Lys Arg Thr Ile Pro Phe Gly Val Ala 
625                 630                 635                 640 


Tyr His His Ser Gly Leu Thr Ser Asp Glu Arg Lys Leu Leu Glu Glu 
                645                 650                 655     


Ala Tyr Ser Thr Gly Val Leu Cys Leu Phe Thr Cys Thr Ser Thr Leu 
            660                 665                 670         


Ala Ala Gly Val Asn Leu Pro Ala Arg Arg Val Ile Leu Arg Ala Pro 
        675                 680                 685             


Tyr Val Ala Lys Glu Phe Leu Lys Arg Asn Gln Tyr Lys Gln Met Ile 
    690                 695                 700                 


Gly Arg Ala Gly Arg Ala Gly Ile Asp Thr Ile Gly Glu Ser Ile Leu 
705                 710                 715                 720 


Ile Leu Gln Glu Lys Asp Lys Gln Gln Val Leu Glu Leu Ile Thr Lys 
                725                 730                 735     


Pro Leu Glu Asn Cys Tyr Ser His Leu Val Gln Glu Phe Thr Lys Gly 
            740                 745                 750         


Ile Gln Thr Leu Phe Leu Ser Leu Ile Gly Leu Lys Ile Ala Thr Asn 
        755                 760                 765             


Leu Asp Asp Ile Tyr His Phe Met Asn Gly Thr Phe Phe Gly Val Gln 
    770                 775                 780                 


Gln Lys Val Leu Leu Lys Glu Lys Ser Leu Trp Glu Ile Thr Val Glu 
785                 790                 795                 800 


Ser Leu Arg Tyr Leu Thr Glu Lys Gly Leu Leu Gln Lys Asp Thr Ile 
                805                 810                 815     


Tyr Lys Ser Glu Glu Glu Val Gln Tyr Asn Phe His Ile Thr Lys Leu 
            820                 825                 830         


Gly Arg Ala Ser Phe Lys Gly Thr Ile Asp Leu Ala Tyr Cys Asp Ile 
        835                 840                 845             


Leu Tyr Arg Asp Leu Lys Lys Gly Leu Glu Gly Leu Val Leu Glu Ser 
    850                 855                 860                 


Leu Leu His Leu Ile Tyr Leu Thr Thr Pro Tyr Asp Leu Val Ser Gln 
865                 870                 875                 880 


Cys Asn Pro Asp Trp Met Ile Tyr Phe Arg Gln Phe Ser Gln Leu Ser 
                885                 890                 895     


Pro Ala Glu Gln Asn Val Ala Ala Ile Leu Gly Val Ser Glu Ser Phe 
            900                 905                 910         


Ile Gly Lys Lys Ala Ser Gly Gln Ala Ile Gly Lys Lys Val Asp Lys 
        915                 920                 925             


Asn Val Val Asn Arg Leu Tyr Leu Ser Phe Val Leu Tyr Thr Leu Leu 
    930                 935                 940                 


Lys Glu Thr Asn Ile Trp Thr Val Ser Glu Lys Phe Asn Met Pro Arg 
945                 950                 955                 960 


Gly Tyr Ile Gln Asn Leu Leu Thr Gly Thr Ala Ser Phe Ser Ser Cys 
                965                 970                 975     


Val Leu His Phe Cys Glu Glu Leu Glu Glu Phe Trp Val Tyr Arg Ala 
            980                 985                 990         


Leu Leu Val Glu Leu Thr Lys Lys  Leu Thr Tyr Cys Val  Lys Ala Glu 
        995                 1000                 1005             


Leu Ile  Pro Leu Met Glu Val  Thr Gly Val Leu Glu  Gly Arg Ala 
    1010                 1015                 1020             


Lys Gln  Leu Tyr Ser Ala Gly  Tyr Lys Ser Leu Met  His Leu Ala 
    1025                 1030                 1035             


Asn Ala  Asn Pro Glu Val Leu  Val Arg Thr Ile Asp  His Leu Ser 
    1040                 1045                 1050             


Arg Arg  Gln Ala Lys Gln Ile  Val Ser Ser Ala Lys  Met Leu Leu 
    1055                 1060                 1065             


His Glu  Lys Ala Glu Ala Leu  Gln Glu Glu Val Glu  Glu Leu Leu 
    1070                 1075                 1080             


Arg Leu  Pro Ser Asp Phe Pro  Gly Ala Val Ala Ser  Ser Thr Asp 
    1085                 1090                 1095             


Lys Ala  
    1100 


<210>  6
<211>  121
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetically prepared oligonucleotide sequence


<220>
<221>  misc_feature
<222>  (43)..(54)
<223>  abasic residues

<220>
<221>  misc_feature
<222>  (76)..(76)
<223>  hydroxymethylcytosine

<400>  6
tttttttttt tttttttttt tttttttttt cccccccccc ccnnnnnnnn nnnncccccc       60

ccattttcat catccnggtc attttttttt tttttttttt tggttggtgt ggttggcccc      120

c                                                                      121


<210>  7
<211>  121
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetically prepared oligonucleotide sequence


<220>
<221>  misc_feature
<222>  (43)..(54)
<223>  abasic residues

<220>
<221>  misc_feature
<222>  (76)..(76)
<223>  5-methylcytosine

<400>  7
tttttttttt tttttttttt tttttttttt cccccccccc ccnnnnnnnn nnnncccccc       60

ccataatcat catccnggtc attttttttt tttttttttt tggttggtgt ggttggcccc      120

c                                                                      121


<210>  8
<211>  44
<212>  DNA
<213>  Artificial

<220>
<223>  Synthetically prepared oligonucleotide sequence


<220>
<221>  misc_feature
<222>  (1)..(7)
<223>  abasic residues

<400>  8
nnnnnnnccc cccccatttt catcatcccg gtcatttttt tttt                        44


