                         SEQUENCE LISTING

<110>  PRESIDENT AND FELLOWS OF HARVARD COLLEGE
 
<120>  METHODS FOR HIGH-THROUGHPUT LABELLING AND DETECTION OF BIOLOGICAL
       FEATURES IN SITU USING MICROSCOPY

<130>  010498_00626

<140>  PCT/US2015/039914
<141>  2015-07-10

<150>  US 62/023226
<151>  2014-07-11

<160>  6     

<170>  PatentIn version 3.5

<210>  1
<211>  100
<212>  DNA
<213>  Artificial

<220>
<223>  Figure 2 Transcript with a single Barcode (4-36 nucleotides)


<220>
<221>  barcode
<222>  (19)..(54)
<223>  n is a, c, g, t or u

<400>  1
tcttcagcgt tcccgagann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngtgtat       60

cctgatcaaa aaaggugcgc ugacaaagcg cgcctttttt                            100


<210>  2
<211>  167
<212>  DNA
<213>  Artificial

<220>
<223>  Figure 2 RT with two Barcodes (4-36 nucleotides)


<220>
<221>  barcode
<222>  (19)..(54)
<223>  n is a, c, g, t or u

<220>
<221>  barcode
<222>  (114)..(149)
<223>  n is a, c, g, t or u

<400>  2
tcttcagcgt tcccgagann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngtgtat       60

cctgatcaaa aaaggugcgc ugacaaagcg cgcctttttt gatcaggata cacnnnnnnn      120

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt ctcgggaacg ctgaaga                    167


<210>  3
<211>  100
<212>  DNA
<213>  Artificial

<220>
<223>  Figure 2 RNase H with a single Barcode (4-36 nucleotides)


<220>
<221>  barcode
<222>  (47)..(82)
<223>  n is a, c, g, t or u

<400>  3
aaaaaaggug cgcugacaaa gcgcgccttt tttgatcagg atacacnnnn nnnnnnnnnn       60

nnnnnnnnnn nnnnnnnnnn nntctcggga acgctgaaga                            100


<210>  4
<211>  113
<212>  DNA
<213>  Artificial

<220>
<223>  Figure 2 Guide oligo hybridization with a single Barcode (4-36 
       nucleotides)


<220>
<221>  barcode
<222>  (60)..(95)
<223>  n is a, c, g, t or u

<400>  4
gtgtatcctg atcaaaaaag gugcgcugac aaagcgcgcc ttttttgatc aggatacacn       60

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntctcg ggaacgctga aga             113


<210>  5
<211>  67
<212>  DNA
<213>  Artificial

<220>
<223>  Figure 2 Dpn II digestion with a single Barcode (4-36 
       nucleotides)


<220>
<221>  barcode
<222>  (14)..(49)
<223>  n is a, c, g, t or u

<400>  5
gatcaggata cacnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt ctcgggaacg       60

ctgaaga                                                                 67


<210>  6
<211>  67
<212>  DNA
<213>  Artificial

<220>
<223>  Figure 2 Circularization RCA primer site with Barcode (4-36 
       nucleotides)


<220>
<221>  barcode
<222>  (19)..(54)
<223>  n is a, c, g, t or u

<400>  6
tctcgggaac gctgaagann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngatcag       60

gatacac                                                                 67


