                         SEQUENCE LISTING

<110>  Cepheid
        
<120>  MODIFIED CYTOSINE POLYNUCLEOTIDE OLIGOMERS AND METHODS

<130>  R2097-00376

<150>  61/972,391
<151>  2014-03-30

<160>  22    

<170>  PatentIn version 3.5

<210>  1
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: C1 Sequence


<220>
<221>  modified_base
<222>  (7)..(7)
<223>  CBP moiety

<400>  1
tttagacttc ttggattt                                                     18


<210>  2
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: C2 Sequence 


<220>
<221>  modified_base
<222>  (10)..(10)
<223>  CBP moiety


<400>  2
tttagacttc ttggattt                                                     18


<210>  3
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: C3 Sequence 

<220>
<221>  modified_base
<222>  (7)..(7)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (10)..(10)
<223>  CBP moiety



<400>  3
tttagacttc ttggattt                                                     18


<210>  4
<211>  12
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Short complement Sequence 

<400>  4
tccaagaagt ct                                                           12


<210>  5
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Long complement Sequence 

<400>  5
aaatccaaga agtctaaa                                                     18


<210>  6
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: F1 Sequence 

<220>
<221>  modified_base
<222>  (19)..(19)
<223>  CBP moiety

<400>  6
aattcctgaa gctgacagca                                                   20


<210>  7
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: R1 Sequence 

<220>
<221>  modified_base
<222>  (16)..(16)
<223>  CBP moiety

<400>  7
aaatagcctc caggcca                                                      17


<210>  8
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-1 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety


<400>  8
ctccgtggcc ttagctgtgc tc                                                22

<210>  9
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-2 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (3)..(3)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  9
ctccgtggcc ttagctgtgc tc                                                22


<210>  10
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-3 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  10
ctccgtggcc ttagctgtgc tc                                                22


<210>  11
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-4 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  11
ctccgtggcc ttagctgtgc tc                                                22


<210>  12
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-5 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (9)..(9)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  12
ctccgtggcc ttagctgtgc tc                                                22


<210>  13
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-6 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (9)..(9)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  13
ctccgtggcc ttagctgtgc tc                                                22


<210>  14
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-7 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (10)..(10)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (15)..(15)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (20)..(20)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  14
ctccgtggcc ttagctgtgc tc                                                22


<210>  15
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-C-8 Sequence 

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (10)..(10)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (15)..(15)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (20)..(20)
<223>  CBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  15
ctccgtggcc ttagctgtgc tc                                                22


<210>  16
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P1F Sequence 

<220>
<221>  modified_base
<222>  (19)..(19)
<223>  CBP moiety

<400>  16
aattcctgaa gctgacagca                                                   20


<210>  17
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P1R Sequence 

<220>
<221>  modified_base
<222>  (16)..(16)
<223>  CBP moiety

<400>  17
aaatagcctc caggcca                                                      17


<210>  18
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P2F Sequence 

<400>  18
aattcctgaa gctgacagca                                                   20


<210>  19
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P2R Sequence 

<400>  19
aaatagcctc caggcca                                                      17


<210>  20
<211>  9
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: C-PNA Sequence 

<220>
<221>  modified_base
<222>  (6)..(6)
<223>  CBP moiety

<400>  20
cgatactgc                                                                9


<210>  21
<211>  9
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Control DNA Sequence 

<400>  21
cgatactgc                                                                9


<210>  22
<211>  15
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Target DNA Sequence 

<400>  22
tttgcagtat cgttt                                                        15


