                               SEQUENCE LISTING

<110> CALIFORNIA INSTITUTE OF TECHNOLOGY
 
<120> ENHANCED NUCLEIC ACID IDENTIFICATION AND DETECTION

<130> 45546-716.601

<140> PCT/US2014/060977
<141> 2014-10-16

<150> 62/063,293
<151> 2014-10-13

<150> 61/993,183
<151> 2014-05-14

<150> 61/968,191
<151> 2014-03-20

<150> 61/943,784
<151> 2014-02-24

<150> 61/893,051
<151> 2013-10-18

<160> 101   

<170> PatentIn version 3.5

<210> 1
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 1
aattctaata cgactcacta tagggcaagc accctatcag gcagta                      46


<210> 2
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 2
gtctagccat ggcgttagta                                                   20


<210> 3
<211> 37
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 3
cgatcgagcc atagtggtct gcggaaccgg tcgatcg                                37


<210> 4
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 4
aatctccagg cagtgtcgcc                                                   20


<210> 5
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 5
gaccggacat agagtaaatt                                                   20


<210> 6
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 6
cggggcactc gcaagcaccc tatcaggcag taccacaagg cctttcgcga cccaactgat       60


<210> 7
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 7
cggggcactc gcaagcactc taccagacag tgccacaagg cctttcgcga cccaactgat       60


<210> 8
<211> 41
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 8
taatacgact cactataggg caagcaccct atcaggcagt a                           41


<210> 9
<211> 47
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 9
taattctaat acgactcact atagggcaag caccctatca ggcagta                     47


<210> 10
<211> 32
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 10
cgtacggtct gcggaaccgg tgagtacgta cg                                     32


<210> 11
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 11
acggaggcta tgaccyggta                                                   20


<210> 12
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 12
cttcacggag gctatgac                                                     18


<210> 13
<211> 51
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 13
aattctaata cgactcacta tagggagaag gatgttgcct agccaggart t                51


<210> 14
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (34)..(34)
<223> Inosine

<400> 14
aattctaata cgactcacta tagggagaag gatnatgttg cctagccagg                  50


<210> 15
<211> 39
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 15
cctgcaccag aatacgactt ggagctcata acgtgcagg                              39


<210> 16
<211> 39
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<221> modified_base
<222> (18)..(18)
<223> Inosine

<220>
<223> 3' BHQ1

<400> 16
cctgcactaa catcatgntc ctccaaygtg tcgtgcagg                              39


<210> 17
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 17
aggacgtyaa gttcccggg                                                    19


<210> 18
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 18
gatcgttggt ggagtttac                                                    19


<210> 19
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 19
tcctaaacct caaagaaaaa c                                                 21


<210> 20
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 20
aattctaata cgactcacta tagggagaag ggccaaggrt acccgggctg                  50


<210> 21
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 21
aattctaata cgactcacta tagggagaag gtcrttgcca tagaggggcc                  50


<210> 22
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 22
aattctaata cgactcacta tagggagaag gggagccatc cygcccaccc                  50


<210> 23
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 23
cctgcaaaga cttccgagcg gtcrcaacct gcagg                                  35


<210> 24
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 24
cctgcaagga agacttccga gcggtcrcat gcagg                                  35


<210> 25
<211> 38
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 25
cctgcaaaga cttccgagcg gtcrcaacct cgtgcagg                               38


<210> 26
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 26
cctgcagggt gtgcgcgcga cgaggaagac tgcagg                                 36


<210> 27
<211> 48
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 27
aattctaata cgactcacta tagggaaatc tacggatagc aagttrgc                    48


<210> 28
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 28
ccaaaggcag aagaaagtca                                                   20


<210> 29
<211> 32
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 29
cgcgatggag gttaargcrg cggcgtatcg cg                                     32


<210> 30
<211> 48
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 30
aattctaata cgactcacta tagggaaact ccaagtcgta ttctggtt                    48


<210> 31
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 31
cgaccttgtc gttatctgtg a                                                 21


<210> 32
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 32
cgcgatttca cggaggctat gactaggtat cgcg                                   34


<210> 33
<211> 45
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 33
aattctaata cgactcacta tagggaaatg aatgatctga ggtag                       45


<210> 34
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 34
ttcttctcca tcctymta                                                     18


<210> 35
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 35
cgcgataarg ccctrgaytg ycagatctaa tcgcg                                  35


<210> 36
<211> 49
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (42)..(42)
<223> a, c, g, t, unknown or other

<400> 36
aattctaata cgactcacta tagggaaaca caacattggt anattgact                   49


<210> 37
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 37
ggtgaahrcc tggaaakcra a                                                 21


<210> 38
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 38
cgcgatcacr gtcacygaga rygayatccg atcgcg                                 36


<210> 39
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 39
cgcgatcgac acccgytgyt tygactcaag atcgcg                                 36


<210> 40
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 40
aattctaata cgactcacta tagggaaaaa gtggytcaat ggagta                      46


<210> 41
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 41
caaggatgat yctgatgac                                                    19


<210> 42
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<221> modified_base
<222> (17)..(17)
<223> a, c, g, t, unknown or other

<220>
<223> 3' BHQ1

<400> 42
cgcgatccct yctagcncag garcaactga tcgcg                                  35


<210> 43
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 43
aattctaata cgactcacta tagggaaagc tagaaggatg gagaar                      46


<210> 44
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 44
garacagcta gacacact                                                     18


<210> 45
<211> 31
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<223> 5' FAM

<220>
<223> 3' BHQ1

<400> 45
gcgatcggct aggcaacatc atcatgatcg c                                      31


<210> 46
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 46
cctcccggga gagccatag                                                    19


<210> 47
<211> 43
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 47
tccaagaaag gacccggtct ttttctgcgg aaccggtgag tac                         43


<210> 48
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 48
gtcctggcaa ttccggt                                                      17


<210> 49
<211> 43
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (16)..(16)
<223> Inosine

<400> 49
tccaagaaag gacccngtct ttttctgcgg aaccggtgag tac                         43


<210> 50
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (3)..(3)
<223> Inosine

<220>
<221> modified_base
<222> (8)..(8)
<223> Inosine

<400> 50
ttnccggnaa ttccggt                                                      17


<210> 51
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 51
gcactcgcaa gcaccctatc                                                   20


<210> 52
<211> 49
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 52
ttgggcgtgc ccccgcaagt ttttcagtac cacaaggcct ttcgcgacc                   49


<210> 53
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 53
ctgctagccg agtagtgttg                                                   20


<210> 54
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (16)..(16)
<223> Inosine

<400> 54
gcactcgcaa gcaccntatc                                                   20


<210> 55
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (17)..(17)
<223> Inosine

<220>
<221> modified_base
<222> (41)..(41)
<223> Inosine

<220>
<221> modified_base
<222> (47)..(47)
<223> Inosine

<400> 55
ttgggcgtgc ccccgcnaga tttttcagta ccacaaggcc nttcgcnacc                  50


<210> 56
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (16)..(16)
<223> Inosine

<400> 56
ctgctagccg agtagngttg                                                   20


<210> 57
<211> 43
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (12)..(12)
<223> Inosine

<220>
<221> modified_base
<222> (16)..(16)
<223> Inosine

<400> 57
tccaagaaag gncccngtct ttttctgcgg aaccggtgag tac                         43


<210> 58
<211> 43
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (12)..(12)
<223> Inosine

<220>
<221> modified_base
<222> (16)..(16)
<223> Inosine

<400> 58
cccaagaaag gncccngtct ttttctgcgg aaccggtgag tac                         43


<210> 59
<211> 45
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (14)..(14)
<223> Inosine

<220>
<221> modified_base
<222> (18)..(18)
<223> Inosine

<400> 59
tccaatggaa aggncccngt ctttttctgc ggaaccggtg agtac                       45


<210> 60
<211> 43
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (12)..(12)
<223> Inosine

<220>
<221> modified_base
<222> (16)..(16)
<223> Inosine

<400> 60
tccaagaaag gncccngtct ttttctgcgg aaccggtgag ttc                         43


<210> 61
<211> 43
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (5)..(5)
<223> Inosine

<400> 61
tccangaaag gacccggtct ttttctgcgg aaccggtgag tac                         43


<210> 62
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (5)..(5)
<223> a, c, g, t, unknown or other

<400> 62
accgnaattg ccaggac                                                      17


<210> 63
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (13)..(13)
<223> Inosine

<400> 63
gtcctggcaa ttncggt                                                      17


<210> 64
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (10)..(10)
<223> a, c, g, t, unknown or other

<220>
<221> modified_base
<222> (15)..(15)
<223> a, c, g, t, unknown or other

<400> 64
accggaattn ccggnaa                                                      17


<210> 65
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (9)..(9)
<223> a, c, g, t, unknown or other

<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, g, t, unknown or other

<220>
<221> modified_base
<222> (16)..(17)
<223> a, c, g, t, unknown or other

<400> 65
accggaatng cngggnn                                                      17


<210> 66
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (1)..(2)
<223> Inosine

<220>
<221> modified_base
<222> (6)..(6)
<223> Inosine

<220>
<221> modified_base
<222> (9)..(9)
<223> Inosine

<400> 66
nncccngcna ttccggt                                                      17


<210> 67
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (9)..(9)
<223> a, c, g, t, unknown or other

<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, g, t, unknown or other

<400> 67
accggaatng cnggggt                                                      17


<210> 68
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (2)..(2)
<223> Inosine

<220>
<221> modified_base
<222> (6)..(6)
<223> Inosine

<220>
<221> modified_base
<222> (9)..(9)
<223> Inosine

<400> 68
ancccngcna ttccggt                                                      17


<210> 69
<211> 48
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 69
ttgggcgtgc ccccgcaagt tttcagtacc acaaggcctt tcgcgacc                    48


<210> 70
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 70
cagtaccaca aggcctttcg cgacc                                             25


<210> 71
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 71
ttgggcgtgc ccccgcaag                                                    19


<210> 72
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 72
ctgctagccg agtagtgttg                                                   20


<210> 73
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 73
ctgcggaacc ggtgagtac                                                    19


<210> 74
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 74
tccaagaaag gacccggtc                                                    19


<210> 75
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 75
tcgtcctggc aattccg                                                      17


<210> 76
<211> 222
<212> DNA
<213> Hepatitis c virus 

<400> 76
tcgtgcagcc tccaggaccc cccctctcgg gagagccata gtggtctgcg gaaccggtga       60

gtacaccgga attgccagga cgaccgggtc ctttcttgga tcaacccgct caatgcctgg      120

agatttgggc gtgcccccgc gagactgcta gccgagtagt gttgggtcgc gaaaggcctt      180

gtggtactgc ctgatagggt gcttgcgagt gcctcgggag gt                         222


<210> 77
<211> 222
<212> DNA
<213> Hepatitis c virus 

<400> 77
tcgtacagcc tccaggcccc cccctcccgg gagagccata gtggtctgcg gaaccggtga       60

gtacaccgga attgccggga agactgggtc ctttcttgga taaacccact ctatgcccgg      120

ccatttgggc gtgcccccgc aagactgcta gccgagtagc gttgggttgc gaaaggcctt      180

gtggtactgc ctgatagggt gcttgcgagt gccccgggag gt                         222


<210> 78
<211> 222
<212> DNA
<213> Hepatitis c virus 

<400> 78
tcgtgcagcc tccaggatcc cccctcccgg gagagccata gtggtctgcg gaaccggtga       60

gtacaccgga atcgctgggg tgaccgggtc ctttcttgga gcaacccgct caatacccag      120

aaatttgggc gtgcccccgc gagatcacta gccgagtagt gttgggtcgc gaaaggcctt      180

gtggtactgc ctgatagggt gcttgcgagt gccccgggag gt                         222


<210> 79
<211> 222
<212> DNA
<213> Hepatitis c virus 

<400> 79
ttgtacagcc tccaggaccc cccctcccgg gagagccata gtggtctgcg gaaccggtga       60

gtacaccgga atcgccggga tgaccgggtc ctttcttgga taaacccgct caatgcccgg      120

aaatttgggc gtgcccccgc aagactgcta gccgagtagt gttgggtcgc gaaaggcctt      180

gtggtactgc ctgatagggt gcttgcgagt gccccgggag gt                         222


<210> 80
<211> 190
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide

<400> 80
cctcccggga gagccatagt ggtctgcgga accggtgagt acaccggaat tgccgggayg       60

accgggtcct ttcttggatm aacccgctca atgcccggar atttgggcgt gcccccgcaa      120

gactgctagc cgagtagtgt tgggtcgcga aaggccttgt ggtactgcct gatagggtgc      180

ttgcgagtgc                                                             190


<210> 81
<211> 190
<212> DNA
<213> Hepatitis c virus

<400> 81
cctcccggga gagccatagt ggtctgcgga accggtgagt acaccggaat tgccaggacg       60

accgggtcct ttcgtggata aacccgctca atgcctggag atttgggcgt gcccccgcaa      120

gactgctagc cgagtagtgt tgggtcgcga aaggccttgt ggtactgcct gatagggtgc      180

ttgcgagtgc                                                             190


<210> 82
<211> 190
<212> DNA
<213> Hepatitis c virus

<400> 82
cctcccggga gagccatagt ggtctgcgga accggtgagt acaccggaat tgccaggacg       60

accgggtcct ttcttggatc aacccgctca atgcctggag atttgggcgt gcccccgcga      120

gactgctagc cgagtagtgt tgggtcgcga aaggccttgt ggtactgcct gatagggtgc      180

ttgcgagtgc                                                             190


<210> 83
<211> 190
<212> DNA
<213> Hepatitis c virus

<400> 83
cctcccggga aagccatagt ggtctgcgga accggtgagt acaccggaat taccggaaag       60

actgggtcct ttcttggata aacccactct atgtccggtc atttgggcgt gcccccgcaa      120

gactgctagc ctagtagcgt tgggttgcga acggccttgt ggtactgcct gatagggtgc      180

ttgcgagtgc                                                             190


<210> 84
<211> 190
<212> DNA
<213> Hepatitis c virus

<400> 84
cctcccggga gagccatagt ggtctgcgga accggtgagt acaccggaat cgctggggtg       60

accgggtcct ttcttggagc aacccgctca atacccagaa atttgggcgt gcccccgcga      120

gatcactagc cgagtagtgt tgggtcgcga aaggccttgt ggtactgcct gatagggtgc      180

ttgcgagtgc                                                             190


<210> 85
<211> 190
<212> DNA
<213> Hepatitis c virus

<400> 85
cctcccggga gagccatagt ggtctgcgga accggtgagt acaccggaat cgccgggatg       60

accgggtcct ttcttggatt aacccgctca atgcccggaa atttgggcgt gcccccgcaa      120

gactgctagc cgagtagtgt tgggtcgcga aaggccttgt ggtactgcct gatagggtgc      180

ttgcgagtgc                                                             190

<210> 86
<211> 200
<212> DNA
<213> Hepatitis c virus

<400> 86
atgagcacga atcctaaacc tcaaagaaaa accaaacgta acaccaaccg tcgcccacag       60

gacgtcaagt tcccgggtgg cggtcagatc gttggtggag tttacttgtt gccgcgcagg      120

ggccctagat tgggtgtgcg cgcgacgagg aagacttccg agcggtcgca acctcgaggt      180

agacgtcagc ctatccccaa                                                  200


<210> 87
<211> 200
<212> DNA
<213> Hepatitis c virus

<400> 87
atgagcacga atcctaaacc tcaaagaaaa accaaacgta acaccaaccg ccgcccacag       60

gacgtcaagt tcccgggcgg tggtcagatc gttggtggag tttacctgtt gccgcgcagg      120

ggccccaggt tgggtgtgcg cgcgactagg aagacttccg agcggtcgca acctcgtgga      180

aggcgacaac ctatccccaa                                                  200


<210> 88
<211> 231
<212> DNA
<213> Hepatitis c virus

<400> 88
gtctagccat ggcgttagta tgagtgtcgt gcagcctcca ggaccccccc tcccgggaga       60

gccatagtgg tctgcggaac cggtgagtac accggaattg ccaggacgac cgggtccttt      120

cttggataaa cccgctcaat gcctggagat ttgggcgtgc ccccgcaaga ctgctagccg      180

agtagtgttg ggtcgcgaaa ggccttgtgg tactgcctga tagggtgctt g               231


<210> 89
<211> 231
<212> DNA
<213> Hepatitis c virus

<400> 89
gtctagccat ggcgttagta tgagtgtcgt gcagcctcca ggaccccccc tcccgggaga       60

gccatagtgg tctgcggaac cggtgagtac accggaattg ccaggacgac cgggtccttt      120

cttggatcaa cccgctcaat gcctggagat ttgggcgtgc ccccgcgaga ctgctagccg      180

agtagtgttg ggtcgcgaaa ggccttgtgg tactgcctga tagggtgctt g               231


<210> 90
<211> 231
<212> DNA
<213> Hepatitis c virus

<400> 90
gtctagccat ggcgttagta tgagtgtcgt acagcctcca ggcccccccc tcccgggaga       60

gccatagtgg tctgcggaac cggtgagtac accggaattg ccgggaagac tgggtccttt      120

cttggataaa cccactctat gcccggccat ttgggcgtgc ccccgcaaga ctgctagccg      180

agtagcgttg ggttgcgaaa ggccttgtgg tactgcctga tagggtgctt g               231


<210> 91
<211> 231
<212> DNA
<213> Hepatitis c virus

<400> 91
gtctagccat ggcgttagta tgagtgtcgt acagcctcca ggcccccccc tcccgggaga       60

gccatagtgg tctgcggaac cggtgagtac accggaatta ccggaaagac tgggtccttt      120

cttggataaa cccactctat gtccggtcat ttgggcgtgc ccccgcaaga ctgctagccg      180

agtagcgttg ggttgcgaaa ggccttgtgg tactgcctga tagggtgctt g               231


<210> 92
<211> 231
<212> DNA
<213> Hepatitis c virus

<400> 92
gcctagccat ggcgttagta cgagtgtcgt gcagcctcca ggaccccccc tcccgggaga       60

gccatagtgg tctgcggaac cggtgagtac accggaatcg ctggggtgac cgggtccttt      120

cttggaacaa cccgctcaat acccagaaat ttgggcgtgc ccccgcgaga tcactagccg      180

agtagtgttg ggtcgcgaaa ggccttgtgg tactgcctga tagggtgctt g               231


<210> 93
<211> 232
<212> DNA
<213> Hepatitis c virus

<400> 93
gtctagccat ggcgttagta tgagtgttgt acagcctcca ggaccccccc tcccgggaga       60

gccatagtgg tctgcggaac cggtgagtac accggaatcg ccaggacgac cgggtccttt      120

cttggattaa acccgctcaa tgcctggaaa tttgggcgtg cccccgcaag actgctagcc      180

gagtagtgtt gggttgcgaa aggccttgtg gtactgcctg atagggtgct tg              232


<210> 94
<211> 95
<212> DNA
<213> Hepatitis c virus

<400> 94
tttgggcgtg cccccgcaag actgctagcc gagtagtgtt gggtcgcgaa aggccttgtg       60

gtactgcctg atagggtgct tgcttgcgag tgccc                                  95


<210> 95
<211> 95
<212> DNA
<213> Hepatitis c virus

<400> 95
gggcactcgc aagcaagcac cctatcaggc agtaccacaa ggcctttcgc gacccaacac       60

tactcggcta gcagtcttgc gggggcacgc ccaaa                                  95


<210> 96
<211> 11
<212> PRT
<213> Hepatitis c virus

<400> 96
Phe Gly Arg Ala Pro Ala Arg Leu Leu Ala Glu 
1               5                   10      


<210> 97
<211> 19
<212> PRT
<213> Hepatitis c virus

<400> 97
Cys Trp Val Ala Lys Gly Leu Val Val Leu Pro Asp Arg Val Leu Ala 
1               5                   10                  15      


Ser Ala Pro 
            


<210> 98
<211> 104
<212> DNA
<213> Hepatitis c virus

<400> 98
gcagcctcca ggaccccccc tcccgggaga gccatagtgg tctgcggaac cggtgagtac       60

accggaattg ccaggacgac cgggtccttt cttggataaa cccg                       104


<210> 99
<211> 104
<212> DNA
<213> Hepatitis c virus

<400> 99
cgggtttatc caagaaagga cccggtcgtc ctggcaattc cggtgtactc accggttccg       60

cagaccacta tggctctccc gggagggggg gtcctggagg ctgc                       104


<210> 100
<211> 17
<212> PRT
<213> Hepatitis c virus

<400> 100
Ser Leu Gln Asp Pro Pro Ser Arg Glu Ser His Ser Gly Leu Arg Asn 
1               5                   10                  15      


Arg 
    


<210> 101
<211> 16
<212> PRT
<213> Hepatitis c virus

<400> 101
Val His Arg Asn Cys Gln Asp Asp Arg Val Leu Ser Trp Ile Asn Pro 
1               5                   10                  15      


