                         SEQUENCE LISTING

<110>  THE UNITED STATES OF AMERICA, AS REPRESENTED BY THE 
       SECRETARY, DEPARTMENT OF HEALTH AND HUMAN SERVICES
 
<120>  DETECTION OF HEPATITIS DELTA VIRUS (HDV) FOR THE DIAGNOSIS AND 
       TREATMENT OF SJOGREN'S SYNDROME AND LYMPHOMA

<130>  4239-91784-02

<150>  US 61/888,706
<151>  2013-10-09

<150>  US 62/011,962
<151>  2014-06-13

<160>  16    

<170>  PatentIn version 3.5

<210>  1
<211>  1679
<212>  DNA
<213>  Hepatitis D virus

<400>  1
cctgagccaa gttccgagcg aggagacgcg gggggaggat cagcacccga gaggggatgt       60

cacggtaaag agcattggaa cgtcggagaa actactccca agaagcaaag agaggtctta      120

ggaagcggac gagatcccca caacgccgga gaatctctgg aaggggaaag aggaaggtgg      180

aagaaaaagg ggcgggcctc ccgatccgag gggcccaatc tccagatctg gagagcactc      240

cggcccgaag ggttgagtag cactcagagg gaggaatcca ctcggagatg agcagagaaa      300

tcacctccag aggacccctt cagcgaacaa gaggcgcttc gagcggtagg agtaagacca      360

tagcgatagg aggagatgct aggagtaggg ggagaccgaa gcgaggagga aagcaaagaa      420

agcaacgggg ctagccggtg ggtgttccgc cccccgagag gggacgagtg aggcttatcc      480

cggggaactc gacttatcgt ccccatctag cgggaccccg gacccccttc gaaagtgacc      540

ggagggggtg ctgggaacac cggggaccag tggagccatg ggatgccctt cccgatgctc      600

gattccgact ccccccccca agggtcgccc aggaatggcg ggaccccact ctgcagggtc      660

cgcgttccat cctttcttac ctgatggccg gcatggtccc agcctcctcg ctggcgccgg      720

ctgggcaaca ttccgagggg accgtcccct cggtaatggc gaatgggacc cacaaatctc      780

tctagattcc gatagagaat cgagagaaaa gtggctctcc cttagccatc cgagtggacc      840

tgcgtcctcc ttcggatgcc caggtcggac cgcgaggagg tggagatgcc atgccgaccc      900

gaagaggaaa gaaggacgcg agacgcaaac ctgtgagtgg aaacccgctt tattcactgg      960

ggtcgacaac tctggggaga aaagggcgga tcggctggga agagtatatc ctatggaaat     1020

ccctggtttc ccctgatgtc cagcccctcc ccggtccgag agaaggggga ctccgggact     1080

ccctgcagat tggggacgaa gccgcccccg ggcgctcccc tcgatccacc ttcgaggggg     1140

ttcacacccc caaccggcgg gccggctact cttctttccc ttctctcgtc ttcctcggtc     1200

aacctcctga gttcctcttc ttcctccttg ctgaggttct tgcctcccgc cgatagctgc     1260

ttcttcttgt tctcgagggc cttccttcgt cggtgatcct gcctctcctt gtcggtgaat     1320

cctcccctga gaggcctctt ccgaggtccg gagtctacct ccatctggtc cgttcgggcc     1380

ctcttcgcgg ggggagcccc ctctccatcc ttatccttct ttccgagaat tcctttgatg     1440

ttccccagcc agggattttc gtcctctatc ttcttgagtt tcttctttgt cttccggagg     1500

tctctctcga gttcctctaa cttctttctt ccggccaccc actgctcgag gatctcttct     1560

ctccctccgc ggttcttcct cgactcggac cggctcatct cggctagagg cggcagtcct     1620

cagtactctt acacttttct gtaaagagga gactgctgga ctcgccgccc gagcccgag      1679


<210>  2
<211>  195
<212>  PRT
<213>  Hepatitis D virus

<400>  2

Met Ser Arg Ser Glu Ser Arg Lys Asn Arg Gly Gly Arg Glu Glu Ile 
1               5                   10                  15      


Leu Glu Gln Trp Val Ala Gly Arg Lys Lys Leu Glu Glu Leu Glu Arg 
            20                  25                  30          


Asp Leu Arg Lys Thr Lys Lys Lys Leu Lys Lys Ile Glu Asp Glu Asn 
        35                  40                  45              


Pro Trp Leu Gly Asn Ile Lys Gly Ile Leu Gly Lys Lys Asp Lys Asp 
    50                  55                  60                  


Gly Glu Gly Ala Pro Pro Ala Lys Arg Ala Arg Thr Asp Gln Met Glu 
65                  70                  75                  80  


Val Asp Ser Gly Pro Arg Lys Arg Pro Leu Arg Gly Gly Phe Thr Asp 
                85                  90                  95      


Lys Glu Arg Gln Asp His Arg Arg Arg Lys Ala Leu Glu Asn Lys Lys 
            100                 105                 110         


Lys Gln Leu Ser Ala Gly Gly Lys Asn Leu Ser Lys Glu Glu Glu Glu 
        115                 120                 125             


Glu Leu Arg Arg Leu Thr Glu Glu Asp Glu Arg Arg Glu Arg Arg Val 
    130                 135                 140                 


Ala Gly Pro Pro Val Gly Gly Val Asn Pro Leu Glu Gly Gly Ser Arg 
145                 150                 155                 160 


Gly Ala Pro Gly Gly Gly Phe Val Pro Asn Leu Gln Gly Val Pro Glu 
                165                 170                 175     


Ser Pro Phe Ser Arg Thr Gly Glu Gly Leu Asp Ile Arg Gly Asn Gln 
            180                 185                 190         


Gly Phe Pro 
        195 


<210>  3
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  3
gagatsccat gccgacccga agag                                              24


<210>  4
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  4
gaaggaaggc cctsgagaac aaga                                              24


<210>  5
<211>  431
<212>  DNA
<213>  Hepatitis D virus

<400>  5
ggagatgcca tgccgacccg aagaggaaag aaggacgcga gacgcaaacc tgtgagtgga       60

aacccgcttt attcactggg gtcgacaact ctggggagaa aagggcggat cggctgggaa      120

gagtatatcc catggaaatc cctggtttcc cctgatgtcc agcccctccc cggtccgaga      180

gaagggggac tccgggactc cctgcagatt ggggacgaag ccgcccccgg gcgctcccct      240

cgatccacct tcgagggggt tcacaccccc aaccggcggg ccggctactc ttctttccct      300

tctctcgtct tcctcggtca acctcctgag ttcctcttct tcctccttgc tgaggttctt      360

gcctcccgcc gatagctgct tcttcttgtt ctcgagggcc ttccttcgtc ggtgatcctg      420

cctctccttg t                                                           431


<210>  6
<211>  431
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Hepatitis delta virus consensus sequence


<220>
<221>  misc_feature
<222>  (62)..(62)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (356)..(356)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (359)..(359)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (423)..(423)
<223>  n is a, c, g, or t

<400>  6
ggagatgcca tgccgacccg aagaggaaag aaggacgcga gacgcaaacc tgtgagtgga       60

ancccgcttt attcactggg gtcgacaact ctggggagaa aagggcggat cggctgggaa      120

gagtatatcc catggaaatc cctggtttcc cctgatgtcc agcccctccc cggtccgaga      180

gaagggggac tccgggactc cctgcagatt ggggacgaag ccgcccccgg gcgctcccct      240

cgatccacct tcgagggggt tcacaccccc aaccggcggg ccggctactc ttctttccct      300

tctctcgtct tcctcggtca acctcctgag ttcctcttct tcctccttgc tgaggntcnt      360

gcctcccgcc gatagctgct tcttcttgtt ctcgagggcc ttccttcgtc ggtgatcctg      420

ccnctccttg t                                                           431


<210>  7
<211>  404
<212>  DNA
<213>  Hepatitis D virus


<220>
<221>  misc_feature
<222>  (58)..(58)
<223>  n is a, c, g, or t

<400>  7
agatgccacg ccgacccgaa gaggaaagaa ggacgcgaga cgcaaacctg tgagtggnaa       60

cccgctttat tcactggggt cgacaactct ggggagaaaa gggcggatcg gctgggaaga      120

gtatatccta tggaaatccc tggtttcccc tgatgtccag cccctccccg gtccgagaga      180

agggggactc cgggactccc tgcagattgg ggacgaagcc gcccccgggc gctcccctcg      240

atccaccttc gagggggttc acacccccaa ccggcgggcc ggctactctt ctttcccttc      300

tctcgtcttc ctcggtcaac ctcctgagtt cctcttcttc ctccttgctg tgkttcttgc      360

ctcccgccga tagctgcttc ttcttgttct cgagggcctt cctt                       404


<210>  8
<211>  405
<212>  DNA
<213>  Hepatitis D virus


<220>
<221>  misc_feature
<222>  (59)..(59)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (352)..(352)
<223>  n is a, c, g, or t

<400>  8
gagatgccat gccgacccga agaggaaaga aggacgcgag acgcaaacct gtgagtggna       60

acccgcttta ttcactgggg tcgacaaytc tggggagaaa agggcggatc ggctgggaag      120

agtatatcct atggaaatcc ctggtttccc ctgatgtcca gcccctcccc ggkccgagag      180

aagggggact ccgggactcc ctgsagattg gggacgaagc cgcccccggg cgctcccctc      240

gatccacctt cgagggggtt cacacccccm accggcgggc cggctactct tcyttccctt      300

ctctcgtctt cctcggtcaa cctcctgart tcctcttctt cctccttgct gnagttcttg      360

cctcccgccg atagctgctt cttcttgttc tcgagggcct tcctt                      405


<210>  9
<211>  405
<212>  DNA
<213>  Hepatitis D virus


<220>
<221>  misc_feature
<222>  (43)..(43)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (45)..(45)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (59)..(59)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (356)..(356)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (359)..(359)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (398)..(398)
<223>  n is a, c, g, or t

<400>  9
gagatgccat gccgacccga agaggaaaga aggacgcgag acncnaacct gtgagtggna       60

acccgcttta ttcactgggg tcgacaactc tggggagaaa agggcggatc ggctgggaag      120

agtatatccc atggaaatcc ctggtttccc ctgatgtcca gcccctcccc ggtccgagag      180

aagggggact ccgggactcc ctgcagattg gggacgaagc cgcccccggg cgctcccctc      240

gatccacctt cgagggggtt cacaccccca accggcgggc cggctactct tctttccctt      300

ctctcgtctt cctcggtcaa cctcctgagt tcctcttctt cctccttgct gaggtnctng      360

cctcccgccg atagctgctt cttcttgttc tcgagggnct tcctt                      405


<210>  10
<211>  405
<212>  DNA
<213>  Hepatitis D virus


<220>
<221>  misc_feature
<222>  (59)..(59)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (355)..(355)
<223>  n is a, c, g, or t

<400>  10
gagatgccat gccgacccga agaggaaaga aggacgcgag acgcaaacct gtgagtggna       60

acccgcttta ttcactgggg tcgacaactc tggggagaaa agggcggatc ggctgggaag      120

agtatatccc atggaaatcc ctggtttccc ctgatgtcca gcccctcccc ggtccgagag      180

aagggggact ccgggactcc ctgcagattg gggacgaagc cgcccccggg cgctcccctc      240

gatccacctt cgagggggtt cacaccccca accggcgggc cggctactct tctttccctt      300

ctctcgtctt cctcggtcaa cctcctgagt tcctcttctt cctccttgct gaggntctkg      360

cctcccgccg atagctgctt cttcttgttc tcgagggcct tcctt                      405


<210>  11
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  11
ggctactctt ctttcccttc tc                                                22


<210>  12
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  12
acaaggagag gcaggatca                                                    19


<210>  13
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synhtetic polynucleotide

<400>  13
tctcgtcttc ctcggtcaa                                                    19


<210>  14
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synhtetic polynucleotide

<400>  14
gccctcgaga acaagaagaa                                                   20


<210>  15
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic polynucleotide

<400>  15
ttcctccttg ctgaggttct tgcc                                              24


<210>  16
<211>  4
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Synthetic peptide


<220>
<221>  misc_feature
<222>  (2)..(4)
<223>  Xaa can be any naturally occurring amino acid

<400>  16

Cys Xaa Xaa Xaa 
1               


