                         SEQUENCE LISTING

<110>  University of Copenhagen
 
<120>  RNA probing method and reagents

<130>  P3260PC00

<160>  13    

<170>  PatentIn version 3.5

<210>  1
<211>  33
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Ligation_adapter
<222>  (1)..(33)
<223>  Carrying a phosphate modification in 5' and an amino modification
       in 3'

<400>  1
agatcggaag agcgtcgtgt agggaaagag tgt                                    33


<210>  2
<211>  48
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer1
<222>  (1)..(48)

<400>  2
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgct                    48


<210>  3
<211>  64
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer2
<222>  (1)..(64)

<220>
<221>  barcode
<222>  (25)..(30)

<400>  3
caagcagaag acggcatacg agatggacgg gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  4
<211>  64
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer2
<222>  (1)..(64)

<220>
<221>  Barcode
<222>  (25)..(30)

<400>  4
caagcagaag acggcatacg agattgacat gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  5
<211>  64
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer2
<222>  (1)..(64)

<220>
<221>  Barcode
<222>  (25)..(30)

<400>  5
caagcagaag acggcatacg agatggaact gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  6
<211>  64
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer2
<222>  (1)..(64)

<220>
<221>  Barcode
<222>  (25)..(30)

<400>  6
caagcagaag acggcatacg agattacaag gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  7
<211>  64
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer2
<222>  (1)..(64)

<220>
<221>  Barcode
<222>  (25)..(30)

<400>  7
caagcagaag acggcatacg agatgtagcc gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  8
<211>  64
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer2
<222>  (1)..(64)

<220>
<221>  Barcode
<222>  (25)..(30)

<400>  8
caagcagaag acggcatacg agatattggc gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  9
<211>  64
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer2
<222>  (1)..(64)

<220>
<221>  Barcode
<222>  (25)..(30)

<400>  9
caagcagaag acggcatacg agatcactgt gtgactggag ttcagacgtg tgctcttccg       60

atct                                                                    64


<210>  10
<211>  39
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer
<222>  (1)..(39)

<400>  10
agacgtgtgc tcttccgatc tgaaccggac cgaagcccg                              39


<210>  11
<211>  21
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  Primer
<222>  (1)..(21)

<400>  11
agatcggaag agcacacgtc t                                                 21


<210>  12
<211>  36
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  primer_reverse_transcription
<222>  (1)..(36)
<223>  N: A,T,G or C

<220>
<221>  misc_feature
<222>  (22)..(36)
<223>  n is a, c, g, or t

<400>  12
agacgtgtgc tcttccgatc tnnnnnnnnn nnnnnn                                 36


<210>  13
<211>  40
<212>  DNA
<213>  artificial sequence

<220>
<223>  Synthetic molecule


<220>
<221>  ligation_adapter
<222>  (1)..(40)
<223>  N: A, T, G or C

       Carries a phosphate modification in the 5'-end and an amino 
       modification in the 3'-end

<220>
<221>  ligation_adapter
<222>  (1)..(40)
<223>  N: A, T, G or C

       Carries a phosphate modification in 5' and an amino modification 
       in 3'

<220>
<221>  misc_feature
<222>  (1)..(7)
<223>  n is a, c, g, or t

<400>  13
nnnnnnnaga tcggaagagc gtcgtgtagg gaaagagtgt                             40


