                         SEQUENCE LISTING

<110>  Castellanos, Alejandro
       Travi, Bruno
       Saldarriaga, Omar
       Melby, Peter
 
<120>  RECOMBINASE POLYMERASE AMPLIFICATION (RPA) METHOD FOR LEISHMANIA 
       SPP. AND TRYPANOSOMA CRUZI

<130>  UTMB0393WO

<150>  62/845,884
<151>  2013-07-13

<160>  77    

<170>  PatentIn version 3.5

<210>  1
<211>  712
<212>  DNA
<213>  Leishmania donovani

<400>  1
ggttggtgta aaatagggcc gggtggtggt cgggaatggg ctaccctggg ctggattggc       60

ctggacccct gggtctggag gcttgatttc gatctggttg ggattgtctt tattttgctg      120

gctttgggct tgagtttagt gactaaacgg ggctagggct ttgattctgg tgtttggggt      180

ggtgctttag ggtatgcgtg ggcatctgtt ttgtgcttat tatttataat tatgactggg      240

tgtacagtca ctttagttcg ctccgcatgg aggccgatgg gaattggatg accgtattcg      300

gtggcggggt aatgttagtt agcctttctt tagccactat agaataaagg gaatatctaa      360

ttccggcata gctataggat gtggtagggt aagcgtgaca tatagtcaag ttatattgtg      420

agtttacgaa tcaattggac ttagcgccta ctcatacatt atatactctt gaatgtgaag      480

tttttgatct gtttggttat gttatgatcg aggctgacac aatttgatgg cctgtgtaaa      540

tatatcttac cttaaggtgg cttctttgaa atgcaatttg aattaatttg gggatgggtt      600

gctggaggtg ttgggacgtg ttggatggtt gggaattggt ggaaaatccc gaaaaatggt      660

cgaaaaatgc caaaaatccc aaacttttct ggtcctccgg gtaggggcgt tc              712


<210>  2
<211>  54
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  2
ctacccggag gaccagaaaa gtttgggcta cccggaggac cagaaaagtt tggg             54


<210>  3
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  3
gatcgaggct gacacaattt gatggcctgt g                                      31


<210>  4
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  4
tggcctgtgt aaatatatct taccttaagg tggc                                   34


<210>  5
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  5
tctgtttggt tatgttatga tcgaggctga c                                      31


<210>  6
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  6
ctacccggag gaccagaaaa gtttggga                                          28


<210>  7
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  7
ttcgggattt tccaccaatt cccaaccatc                                        30


<210>  8
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  8
accaattccc aaccatccaa cacgtcccaa                                        30


<210>  9
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  9
ctttgaaatg caatttgaat taatttgggg atgggttgct ggagg                       45


<210>  10
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  10
ccatagcgct ttagaatagt tcgactccga                                        30


<210>  11
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  11
atagcgcttt agaatagttc gactccgaa                                         29


<210>  12
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  12
atcggtatag atattactac tacacacagc                                        30


<210>  13
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  13
gcagtatgcg ccaacctata aatatatcgg ta                                     32


<210>  14
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  14
ataactgaca ttactcgtac actataagta ttatgtttaa tatat                       45


<210>  15
<211>  722
<212>  DNA
<213>  Leishmania braziliensis


<220>
<221>  misc_feature
<222>  (600)..(600)
<223>  n is a, c, g, or t

<400>  15
ggggaggcga catccgggcc ctgcagcccc acttaccgtg gcgcgggaat gttaaagggc       60

ccaggccaaa aattatccct ccgggccggg ataatgggaa ggggtaaata aataggtaat      120

taaaattatt aaattagcca tctgccagta aaattaggta attgtaaaaa atttagggag      180

gaataccatt atcgatacgc taaggtagta cctatgggaa atgcattagg ggggtatagg      240

tccaataagg tggataatat aaggggaata ataacgtgta cctaatatcc gggggaatta      300

cctatgttaa ccctataata ctctaactat acaacgctaa ttatactata ttactatgct      360

actaatgtta gaacctattt agtaacaata ttagattcaa tacatagctt tattaataaa      420

ctaatttata tacattttta tatttataaa tcgtgttact actattgata caacattaaa      480

atatttttat taacgtaata atcttttgcg cagagttatt atgttgtcaa tgaataattt      540

aatttaaata tcataaaatt tgatgaaaat gtactccccg acatgcctct gggtaggggn      600

gttctgcgaa aaccgaaaaa tggcatacag aaaccccgtt caaaaaatgc ccgaaaatcg      660

ctatttttgg cctccccgtg cacaattagg ggttggtgta atatagtggg ccgcgcaccc      720

cg                                                                     722


<210>  16
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  16
tgcgcagagt tattatgttg tcaatgaata a                                      31


<210>  17
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  17
gatgaaaatg tactccccga catgcctctg                                        30


<210>  18
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  18
aatttgatga aaatgtactc cccgacatgc                                        30


<210>  19
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  19
tgagacgggg tttctgtatg ccatttttcg gt                                     32


<210>  20
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  20
ctaattgtgc acggggaggc caaaaatagc ga                                     32


<210>  21
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  21
aacccctaat tgtgcacggg gaggccaaa                                         29


<210>  22
<211>  1423
<212>  DNA
<213>  Trypanosoma cruzi

<400>  22
cacaatctcc taatccatac gatttgtact ctaacgcatt tcaatattca caatcacagt       60

ctaaactgta acaaaactat ctatatacca atctatcaaa ttaaatccta taaccaactg      120

gcactatatt acaccaaccc caatcgaacc ccacctcccc gtaaaatccg ccaaatccat      180

aaaataatgt acgggggaga tgcatgaatt tccgccccaa aagttgaacg cccctcccaa      240

aatcaaagtt tgcgtatttc cgaaccccat tttatgataa ataacaaaca ccaaaccata      300

ccaaccaccc atagttatac actacccctc atacattata tcaaaacata tacaacagat      360

aataaacata atcattataa ctcaatctca cactactata cgaacacaca actatccaac      420

tccagatgca cctcatatcc aattcaacta cacaaattca taaatacata ttcatctata      480

ttacaccaac cccaatcgaa ccccacctcc ccgaaaattc cgccaaatcc ataaaataat      540

gtacggggga gatgcatgaa ttctggcccc aaaagttgaa cgcccctccc aaaacagagt      600

ttccggaaat tccaggatac caattttaac cactaacagc ctacatcaaa ccacaacgca      660

ccatattata taaacatata ctgtaacata gaacacatca ttaactatca aacttataca      720

ctactacaaa ccactacatt atcactaccc atctatcaaa catcatatca caatcataaa      780

gaaacaacta atctaaaact atattccatt attaccccat aacccacagc ccgtaatatt      840

acaccaaccc caatcgaacc ccacctcccc gtaaaatccg ccaaatccat aaaataatgt      900

acggggagat gcatgaattt ccgccccaaa agttgaacgc ccctcccaaa accagaaatc      960

ccagaaattt tatagcctac atttcgtaac taactaccta cgccaacccc acctccaaca     1020

gtaagacatt aatatacata acaacaatat caagtataca ataccatact attactatca     1080

cctctcacta tattcaaatc cacacgtcaa cattcatagt actataccaa tcataaacaa     1140

gataataaaa ctataatagc cttatcaccc ttaccaccca cagcctatat tacaccaacc     1200

ccaatcgaac cccacctccc cgtaaaatcg gtaaaatccc caaaataatg tacgggggag     1260

atgcatgatt ctgggcccca aaagttgaac gcccctccca aaaccatatt ttccagtttc     1320

ttgcagacct atttcatacc acccatcaca ataaacaatc aacattatat atattattaa     1380

actataaact atatacatta tcaatcacca aatctacata act                       1423


<210>  23
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  23
agccttatca cccttaccac ccacagccta                                        30


<210>  24
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  24
cagcctatat tacaccaacc ccaatcgaac                                        30


<210>  25
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  25
acccttacca cccacagcct atattacacc a                                      31


<210>  26
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  26
gcgttcaact tttggggccc agaatcatgc                                        30


<210>  27
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  27
aacttttggg gcccagaatc atgcatctcc                                        30


<210>  28
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  28
ctgcaagaaa ctggaaaata tggttttggg ag                                     32


<210>  29
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  29
caacttttgg ggcggaaatt catgcatctc ccccgtacat tattt                       45


<210>  30
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  30
tgaattgtga tgggatactg tgagtgtctt gttatacttt tgtgt                       45


<210>  31
<211>  804
<212>  DNA
<213>  Leishmania infantum

<400>  31
ggggttggtg taaaataggg ccgggtggtg gccggaaatg gctcccctgg gctggattgg       60

gttttcctga gctggattgg gctgaaaccc tggggttggg ggcttggttt tgggtgggct      120

agcgtttttg gtgttttaat ggttcgggtg cctttgatgt gggtgttggt tgtgtggctt      180

tagtgggttg gagcctggtg gaggcttgtg ccttggtgga ttagtctggt ggggtgcttc      240

ggtgttactc tacgggtgtc tttgatgatg ctggggtggg ttgactttaa tgttggggtt      300

agccgatggt ggtcttgggt tgaccttagg tggtgattct ctttaatatt gatattaaag      360

gtaagtgctt ggacatatga tatagccata gcgctttaga atagttcgac tccgaagacc      420

cagtctgagg tagtgttaag tatacattaa tctagtatat aatttagcat ataataactg      480

acattgctcg tacactataa gtattatgtt taatatattg ctgtagtatg tatttgtgtg      540

ctgtgtgtag tagtaatatc tataccgata tatttatagg ttggcgcata ctgcagtgaa      600

ttgaaaatta atgaattggg gtcaggctgt ggggggtgtc gtaaattctg gaaaatgatg      660

gaaaatggcc aaaaatgggg ggaaattcca aacttttctg gtcctccggg taggggcgtt      720

ctgcaaaatc ggaaaaatgg gtgcagaaat cccgttcaaa aatcggccaa aaatgccaaa      780

aatcggctcc ggggcgggaa actg                                             804


<210>  32
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  32
tagccatagc gctttagaat agttcgrctc cgaa                                   34


<210>  33
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  33
tatagccata gcgctttaga atagttcgrc tccga                                  35


<210>  34
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  34
tatagccata gcgctttaga atagttcg                                          28


<210>  35
<211>  34
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  35
trctcgtaca ctataagtat tatgtttaat atat                                   34


<210>  36
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  36
ctgacattrc tcgtacacta tagtattatg                                        30


<210>  37
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  37
taataactac attactcgta cactataagt attatgttta atat                        44


<210>  38
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  38
tagtaatatc trtaccgata tatttrtagg ttg                                    33


<210>  39
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  39
caacctayaa atatatcggt ayagatatta cta                                    33


<210>  40
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  40
catactgcag tgaattgraa attaatraat tgg                                    33


<210>  41
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  41
ccaattyatt aatttycaat tcactgcagt atg                                    33


<210>  42
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  42
ccctacccgg aggaccagaa aagtttgg                                          28


<210>  43
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  43
ccaaactttt ctggtcctcc gggtaggggc gttctgcaaa                             40


<210>  44
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  44
gaaaaatggg tccagaaatg ccgttcaa                                          28


<210>  45
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  45
ttgaacggga tttctgcacc catttttc                                          28


<210>  46
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  46
aaactggggg ttggtgtaaa atagggccgg                                        30


<210>  47
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  47
ccggccctat tttacaccaa cccccagttt                                        30


<210>  48
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  48
ggaaactggg ggttggtgta aaatagggc                                         29


<210>  49
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  49
gccctatttt acaccaaccc ccagtttcc                                         29


<210>  50
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  50
cacgcgcgct caaccataca aattgtcg                                          28


<210>  51
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  51
gcgtcttgtc agtatggact tattgccgtt                                        30


<210>  52
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  52
atggcagatg gtcgcaccca acgctccggt aaaacacgcc cagc                        44


<210>  53
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  53
taatatacac ttgcacgcgt tacgagtgtg                                        30


<210>  54
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  54
atataaacca cacgacgaaa tatgcgcat                                         29


<210>  55
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  55
tgtgtagaaa aatgtaattg cggcttgact tcgcgtgtgc acata                       45


<210>  56
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  56
aatgacggtg cggcgacctt aactgtc                                           27


<210>  57
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  57
cggcgacctt aactgtctgc aacaacact                                         29


<210>  58
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  58
gcgaccttaa ctgtctgcaa caacactgc                                         29


<210>  59
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  59
ccatacaaaa cacccttcac ggattgcatt                                        30


<210>  60
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  60
ccccatacaa aacacccttc acggattgc                                         29


<210>  61
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  61
cggccatttt tcattttgga cacttaagtt tttgtgcggt aaagt                       45


<210>  62
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  62
agtttttgtg cggtaaagtg agttttggtt tgtgagactg tttgt                       45


<210>  63
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  63
tacatgcatg cgagaggaac aactgtgatg                                        30


<210>  64
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  64
tatattgcga agtcaagcgg caagtaggtt                                        30


<210>  65
<211>  45
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  65
tgttgcgtcc tcttcgcacc aagatttgca cgcacatgtg tgcat                       45


<210>  66
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  66
gtataggctt ttcccacata cacagcaaac                                        30


<210>  67
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  67
gacgttgtag aacgcaccgc ctatacaca                                         29


<210>  68
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  68
ttatgtgagc cgttatccac gcgcacgca                                         29


<210>  69
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  69
aaaatagacg gcgtttcggt ttttggcggg agggagagag aggg                        44


<210>  70
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  70
aggcctattc tttcgatagg cgcctttccc                                        30


<210>  71
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  71
ctgcttttgt atatacgcgg ttgtgcgcta                                        30


<210>  72
<211>  44
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  72
cagcaaagtt tttgtactca aaaacaacat ttgcagtaaa caaa                        44


<210>  73
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  73
aaacatacaa ctccggggag gcttgtgt                                          28


<210>  74
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  74
gatcggcctt tttctactgt atgttgtgtc                                        30


<210>  75
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  75
atacgcgata tgttaacgtc gatcggcctt                                        30


<210>  76
<211>  43
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  76
tctagcaagc ctttcccaca gatacgcaat acaatctata tat                         43


<210>  77
<211>  46
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  synthetic oligonucleotide

<400>  77
gtaggggggt tctgcgaaaa ccgaaaaatg gcatacagaa accccg                      46


